TCONS_00073244 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073244
Unique NameTCONS_00073244
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073244 ID=TCONS_00073244|Name=TCONS_00073244|organism=Clytia hemisphaerica|type=transcript|length=542bp
CAAGGCACAATCTATAGCAATTGAGTCCATCAAAGTAAATTGGAATGAGA
AGacgagaaagctccaggaaaaagaTTACAAAGAAAAGGATTTACTGAAT
GCCAAGAATGAAGAGAAACGGTTGAAAgatatacatttttttaaaagtca
agATATTCCTGGACCATTCACATGCAAAGAAGATGTCATCAAATTCATGT
AATCGTTTGAAGAATGTAAAGAGACGGTTGATCGTATGTATAGAGAAGTT
AGATATGCCAAGGCTTGTTCAGGATTTGGTGATAACAAGGCAATGTTCAG
attaaagaaaaatggaaagaagCTTAGCTCAGATGATTATCAGGATGGCT
TAGAAAGATACTTTGAAGGAGCGAAGGAAGCAAAAAGCATATCCATGGCT
GATCTTGAAAACATTTTGTGTGCCCTAGAAGGTAAGAGAAAGAATATCCA
TATCTATTCTGAAAATCATGATTAAAGAAAGTAAGAAAGTCAGGAGTGTA
CTGGACTAAGCTCGTTTACTCTGCCATGGATaatcaaaaaaa
Run BLAST on NCBI

transcript from alignment at scaffold_88:419435..419976

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073244 ID=TCONS_00073244|Name=TCONS_00073244|organism=Clytia hemisphaerica|type=transcript|length=542bp|location=Sequence derived from alignment at scaffold_88:419435..419976 (Clytia hemisphaerica)
tttttttgattATCCATGGCAGAGTAAACGAGCTTAGTCCAGTACACTCC
TGACTTTCTTACTTTCTTTAATCATGATTTTCAGAATAGATATGGATATT
CTTTCTCTTACCTTCTAGGGCACACAAAATGTTTTCAAGATCAGCCATGG
ATATGCTTTTTGCTTCCTTCGCTCCTTCAAAGTATCTTTCTAAGCCATCC
TGATAATCATCTGAGCTAAGcttctttccatttttctttaatCTGAACAT
TGCCTTGTTATCACCAAATCCTGAACAAGCCTTGGCATATCTAACTTCTC
TATACATACGATCAACCGTCTCTTTACATTCTTCAAACGATTACATGAAT
TTGATGACATCTTCTTTGCATGTGAATGGTCCAGGAATATcttgactttt
aaaaaaatgtatatcTTTCAACCGTTTCTCTTCATTCTTGGCATTCAGTA
AATCCTTTTCTTTGTAAtctttttcctggagctttctcgtCTTCTCATTC
CAATTTACTTTGATGGACTCAATTGCTATAGATTGTGCCTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045439XLOC_045439Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073244-exon-scaffold_88-1491911889:419435..419976TCONS_00073244-exon-scaffold_88-1491911889:419435..419976Clytia hemisphaericaexon
TCONS_00073244-exon-scaffold_88-1510915933:419435..419976TCONS_00073244-exon-scaffold_88-1510915933:419435..419976Clytia hemisphaericaexon
TCONS_00073244-exon-scaffold_88-1575043694:419435..419976TCONS_00073244-exon-scaffold_88-1575043694:419435..419976Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_88supercontigscaffold_88:419435..419976 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.519465	0.12063	0.451322	0.349792	0.340601	0.410921	0.158514	0	0.222412	0.647634	0.14191	0.322093	0	0.118926	0.129845	0	0.0819759	0	0.118512	0.206017	0.150732	0.244313	0.111058	0.978211	0.342925	0.682068	0.467725	0.827756	0.361437
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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