|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073245 ID=TCONS_00073245|Name=TCONS_00073245|organism=Clytia hemisphaerica|type=transcript|length=6020bpRun BLAST on NCBI protein sequence of TCONS_00073245-protein >TCONS_00073245-protein ID=TCONS_00073245-protein|Name=TCONS_00073245-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1247bp MVISDLIVVSNYLVVILKQKVGFVENDSVKNVLLVFSIISNDKQVTEIKLRun BLAST on NCBI transcript from alignment at scaffold_89:3082..24143+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00073245 ID=TCONS_00073245|Name=TCONS_00073245|organism=Clytia hemisphaerica|type=transcript|length=21062bp|location=Sequence derived from alignment at scaffold_89:3082..24143+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_89:3082..24143+ >TCONS_00073245 ID=TCONS_00073245|Name=TCONS_00073245|organism=Clytia hemisphaerica|type=CDS|length=48633bp|location=Sequence derived from alignment at scaffold_89:3082..24143+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00073245 vs. Swiss-Prot (Human)
Match: BIRC6 (Baculoviral IAP repeat-containing protein 6 OS=Homo sapiens GN=BIRC6 PE=1 SV=2) HSP 1 Score: 219.55 bits (558), Expect = 8.852e-57 Identity = 127/364 (34.89%), Postives = 199/364 (54.67%), Query Frame = 1
Query: 73 AFQYSPSLNCLISFSRESGIEVLDVHSRKITAQVLLPENLGDNAGHCKYLENEDKLVVASGCKIGCRSTNGEQIFLETILYTSSSDSEEV-KIELDIAKAGLLLSGLEKCMKSTLMTLKNQFQQVISTLKVNYEKTVNKMKDLPSQEIKWLSVCFTMENETLTKVFNMALV--ICKQEQRGPALPIIGDILQRLTSNVKKNYDSV------SSEKRLMFNEVDRLQTFSLWPHMNYKWALPGPMAEAGFYHPHYSKSAEDRAMCFTCSVCLVSWESSDQPWSEHKRHSKDCPFVLGQHTENVPLSVYSATASAQ-ELQRPKDMIVCM-SSSCNNLIATGTAEGYIVIWTIFPTLKIHSEYQISV 1131
+ Y P+LN +++ + I+V+D S L G C+Y+ DK++ +GCR + L+T L T S ++V ++EL + +A LLS C++ ++ + I+ LK + T ++ + KW +V F + + L + + A+V + K Q ALP+ ++ RL+ + + S ++ LM++E +R +TF+ WPH+ Y+WA P PMA+AGFYH + S +DRAMCFTCSVCLV WE +D+PWSEH+RHS +CPFV G+HT+NVPLSV AT+ AQ D I C S SC + +A T G I IW + +K+H +++I+
Sbjct: 72 SLSYHPALNAILAVTSRGTIKVIDGTSGATLQASALSAKPGGQV-KCQYISAVDKVIFVDDYAVGCRKDLNGILLLDTALQTPVSKQDDVVQLELPVTEAQQLLSA---CLEKVDISSTEGYDLFITQLKDGLKNTSHETA-ANHKVAKWATVTFHLPHHVLKSIAS-AIVNELKKINQNVAALPVASSVMDRLSYLLPSARPELGVGPGRSVDRSLMYSEANRRETFTSWPHVGYRWAQPDPMAQAGFYH-QPASSGDDRAMCFTCSVCLVCWEPTDEPWSEHERHSPNCPFVKGEHTQNVPLSVTLATSPAQFPCTDGTDRISCFGSGSCPHFLAAATKRGKICIWDVSKLMKVHLKFEINA 428 HSP 2 Score: 93.5893 bits (231), Expect = 1.088e-18 Identity = 86/349 (24.64%), Postives = 156/349 (44.70%), Query Frame = 2
Query: 4646 LLVDKMHVYSVHYAIIDFKVPIYLTDLVIPPCKALSSITLTSWENDQDPEDGQVVASSEVINKHALVISNLVQPVKLRFLKIVVI---GGESCSVVIPLGQYYGYP-----------VH-------ENTNSLELVQQ------QYSDLFCRFSLAVDRL--------VKPL--SNRVQLTSSKSGSSKHVNVTLGNTKKDIVLCSHIQRCLNILSNHL---------NVDQLLHDQNIESVVPVKESTFSSQQLMLHCLLKAIDIYISSKDRPKPCNHQLITKDQFL-DLFSQLCVYGMTNIQETATKVLHQVCSSEEWWEDGLIEIYRKVFQYNSVVPIPKKRVFSTL 5551
+++++MH + + +DF PI LTD++IP C L+S+++ W ++ + ++V +++ I+ H+L++ +L+ P RF+KI VI G + IPLG YYG+ +H E+ N E+ Q D+ CR++LA RL + PL +N Q K + + + + +D C +Q LN+ N + + L N E ++ ST + ++ + L + + +S P Q Q +LF LC+ G I+ +L Q+C E WW L + ++++ ++ P+ RVF L
Sbjct: 1778 IIIERMHSGARRFVTLDFGRPILLTDVLIPTCGDLASLSIDIWTLGEEVDGRRLVVATD-ISTHSLILHDLIPPPVCRFMKITVIGRYGSTNARAKIPLGFYYGHTYILPWESELKLMHDPLKGEGESANQPEIDQHLAMMVALQEDIQCRYNLACHRLETLLQSIDLPPLNSANNAQYFLRKPDKAVEEDSRVFSAYQD---CIQLQLQLNLAHNAVQRLKVALGASRKMLSETSNPEDLIQTS-STEQLRTIIRYLLDTLLSLLHASNGHSVPAVLQSTFHAQACEELFKHLCISGTPKIRLHTGLLLVQLCGGERWWGQFLSNVLQELYNSEQLLIFPQDRVFMLL 2121 The following BLAST results are available for this feature:
BLAST of TCONS_00073245 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.