TCONS_00073266 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073266
Unique NameTCONS_00073266
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1535

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073266 ID=TCONS_00073266|Name=TCONS_00073266|organism=Clytia hemisphaerica|type=transcript|length=1535bp
GGCGTTTGCCTTTATATATAGCTCTGTATCGTATTAACTTTACCTCGCTG
attcactgagacaggggtgtcaaagATCCTTTGCACAATAAATTCCAGGG
CGAAAGGTAAAATCAACGGCGAAAGAATACCTATCTGACACTCATCGTAG
TCCGATAATGTGGTTTGGTTTTTCTAATCACACCTAGCAGTTTGTCTTTC
GTAAACTATGCTATGAAAACACCATAGGGCATTGTCGTAGAAAGCTgttt
aaaatttgaagtcaaataTCTTTTTCCAGGATACCTTCTtctctttgttg
ttgttgtcaaATTATGTCAAAGCGTTCCCATAGCAACCACAACCCAACAA
CCAATCACAAGTCGTCCTCACAAAGATTGTTTTCCTTCGGGATTTGAATT
TGCttataatgacgtcatcgatcgtgggaatttccctaatgGTGAAACAT
GTTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACA
CCTTGTGAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTCAGA
AGAAAAACAAGTAGAAAACCAATGCATTTTCAATGCAAGAAAATTCAACC
CAGGGGAAGACATTCAGACGCTCTCTGATTGGCAATCTGACCGTTGCTAT
GGTACCCGATGCAGTAAAGATGGTACCATAGTTGCATGGGAAAACATCAA
TTGTTATTCCACACCTTACTACAGCACTACGGAGAAGGGTGGTAGTGTCC
AAACTCCCGAGTTTATTACCACTCCATCGCAGGTAGAATTTTCAACAACT
GAAGCTTCTGGATGTTATGAAAATAGTGTGATTTACCAACCCGGTGAAGA
GATTAGTTTCCAGTACTTTACGGAGAACTCAACATGTTGTGGACGCTATT
GTAATTATAGCAATAAAATTGTTTCTTGGGAAAAATCCGAGTGTGAACAA
GGAAAATCGACTGTCGAGCCTACTTCAACGCAAATTACTACATTTGGTTC
AACCACAGATACAGATCAAGGATGTTATACAAATGGCAGAGCGTACAAGC
CAGGAGCACACATCGATTCAGGTAATGATGGTTCAAGTTGGTGTTTCGGT
CGATATTGTAATGAAAACTCTGTCATTGTCTATTGGGATGATTTCAATTG
TGACGTTAAATCTTCTAAAAAACCGTCACTGATTACATCAAAATATGACT
TCACAAAAACACCGTGGACATCAGAATATGACGTCACAAAGCAACCAGTA
ACGTCAACTAGTGACTTAACAACGACTTTGATCACATCgacaaattttga
tgaaatttcaacattaGATCCTAACCATTTGAGTACATCAAGTGGAGGCC
TTTCTACTACTACAGAGGAGGAGGTTACGACTGAACAGCCACCAGTGGAA
GGTTCTCTATGGGAGCAACTTCagtttttagtgaaaaacaAACTATACTC
AACTGTAGTCGAGGATTCTGGTTTAACGAAATCAAAGGATGGGAAATATC
AAGTGAAACtgtctattttcaaaaaaaaatcatag
Run BLAST on NCBI

transcript from alignment at scaffold_89:193169..196378-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073266 ID=TCONS_00073266|Name=TCONS_00073266|organism=Clytia hemisphaerica|type=transcript|length=3210bp|location=Sequence derived from alignment at scaffold_89:193169..196378- (Clytia hemisphaerica)
GGCGTTTGCCTTTATATATAGCTCTGTATCGTATTAACTTTACCTCGCTG
ATTCACTGAGACAGGGGTGTCAAAGATCCTTTGCACAATAAATTCCAGGG
CGAAAGGTAAAATCAACGGCGAAAGAATACCTATCTGACACTCATCGTAG
TCCGATAATGTGGTTTGGTTTTTCTAATCACACCTAGCAGTTTGTCTTTC
GTAAACTATGCTATGAAAACACCATAGGGCATTGTCGTAGAAAGCTGTTT
AAAATTTGAAGTCAAATATCTTTTTCCAGGATACCTTCTTCTCTTTGTTG
TTGTTGTCAAATTATGTCAAAGCGTTCCCATAGCAACCACAACCCAACAA
CCAATCACAAGTCGTCCTCACAAAGATTGTTTTCCTTCGGGATTTGAATT
TGCTTATAATGACGTCATCGATCGTGGGAATTTCCCTAATGGTGAAACAT
GTTGGCAAATTACTTGTGGTCCGTCGGGTAGATTGATCAAGTCTTTAACA
CCTTGTGAAAAAGTGATGACTCAGCGAAAACCTACAGCAAAACCTTCAGA
AGAAAAACAAGTAGAAAACCAATGCATTTTCAATGCAAGAAAATTCAACC
CAGGTACATACATAATGTTTAATTACATGCTTTTCATATAAGGAAGATTT
GAGCTGTTTTAGGTTAAAAATGTTCGTAGTATTACTTTATTTATTTAGCG
ACTTAAAATCAGTATTTTCTTGATAATTTCTGAAATCTTTAGGCTGAAAT
TGTTTTTAACACACACAACGAGTATATTCGTACTAGAGAAATCAATGAAT
ATATATTTTGGAGCCTACGTAAAATTTGTGAAAACTTGTAGTCAGAAAGT
CTCCCACCTGGCTGTCCGCAAGAAAAGGAGACGTATTAGAATAATGAGGC
AGGGACTTTTGGACACACCAGGGTTGTTCAGACATGTATTTAAATTCAAC
TTAGCAGCTGACTTCAATGCAAACATAACTGTTACACGTTTTTTTATAAG
AACATCCAAAACTTTTGAACCCTTTGAATGTTCATAACTTTTTGAATTTC
AAGCCTAAAATTATTCTTAAATTCTTAACATGCTCTAATTTTTGCCATTT
TTTAAATACTTTTGACCATTTTCCAAAGAAATTGGGTTTGGGTGTTTTTA
GAGCCCGCGAAGCCTTAAAATGTTCTTAACTTATTCTTAAGATTTTGGCC
ATCGAAGCCTTATGTTCTTATAAAAAAACGTGTATGCCATATGAAGGGGG
TATTTGACCTTGTAAAAATATTTAAGATTATCAATCTAATGGTTTCAAGT
TACATCTGAATAAAGGTCCCAGTATTGTGCTAAAAAGACCTTTTGTCGTC
ATCAGATAGAAACTGAAAATAATTTTGATACCTATTGTAGTTCAATTTAC
AAACATTTTATACAACTTTTTGAATGTAGCTGCCAATTGCCGCGCGGGCA
TTTTTTTGTCCGTTTTACCACCCTAAACAGGGCCCCGGTTTGAGGGCTGC
AGTGAGGGGGCCAAATATTGGGGCAAATTGGCGTTACCCAATTTTGAGTT
TTGAGTTTTGAGGGGTTAAACTCTTTCAGGACGGCCTCAGCTAATTTCGT
TCCATTTGGAACGATACTTTTCGGCTGCCGTAATATTTTGTAAGGACCTA
CATTTAGTACGCTGAATAAATAGAGCATAAAAAGAGCTTTCCAACGAACT
CAAACATGACCTATTTAGATTGTTTTAAAGCTGAGATAATTGCATCTGAA
GTTGGAACTTCTAATGAAAAGTAACTGAAAGTTTTCAAAATAGATTTTCT
CGGAAAAAAAGTGAGGAGCCATGCCCCTGCCCCCCCCCCCTATTCTAAAA
CCGATCCCAGTCTTTTTTCGCACCTAAAGACAATAGAAAATAGAAAAAAG
TGTAAAAAAAGGATTGGATCACCTGACCACGCGACTATGGTCGAAAAGGT
GTATTACATAACATTAGAAAGATAAGCTATTTTCCTTAAGAAATACCCGC
CAAGTTACCGAGATCCTAAACTAGTAGTTTAAATCATAAGGGTTGAAAAC
GTTACTTAAATTTACATTCTAAATCTTAATCATCGGGTGTGTGATCATTA
AAAAACTAGTTTGCTACTTTGAGGAACTTAGAAAAAGCCTTCCAAAATCT
GGCTGTGACACTCACTTTGCACCAATCCAATAATGTTGGGGTCGTACCTA
CATGCCATTTTTGTATCGATTAGAAATGTTGAAAAATCGTCCGATTGAGC
TCTTAAAAGTCGTTTGTTTGTTTTCTAGGGGAAGACATTCAGACGCTCTC
TGATTGGCAATCTGACCGTTGCTATGGTACCCGATGCAGTAAAGATGGTA
CCATAGTTGCATGGGAAAACATCAATTGTTATTCCACACCTTACTACAGC
ACTACGGAGAAGGGTGGTAGTGTCCAAACTCCCGAGTTTATTACCACTCC
ATCGCAGGTAGAATTTTCAACAACTGAAGCTTCTGGATGTTATGAAAATA
GTGTGATTTACCAACCCGGTGAAGAGATTAGTTTCCAGTACTTTACGGAG
AACTCAACATGTTGTGGACGCTATTGTAATTATAGCAATAAAATTGTTTC
TTGGGAAAAATCCGAGTGTGAACAAGGAAAATCGACTGTCGAGCCTACTT
CAACGCAAATTACTACATTTGGTTCAACCACAGATACAGATCAAGGATGT
TATACAAATGGCAGAGCGTACAAGCCAGGAGCACACATCGATTCAGGTAA
TGATGGTTCAAGTTGGTGTTTCGGTCGATATTGTAATGAAAACTCTGTCA
TTGTCTATTGGGATGATTTCAATTGTGACGTTAAATCTTCTAAAAAACCG
TCACTGATTACATCAAAATATGACTTCACAAAAACACCGTGGACATCAGA
ATATGACGTCACAAAGCAACCAGTAACGTCAACTAGTGACTTAACAACGA
CTTTGATCACATCGACAAATTTTGATGAAATTTCAACATTAGATCCTAAC
CATTTGAGTACATCAAGTGGAGGCCTTTCTACTACTACAGAGGAGGAGGT
TACGACTGAACAGCCACCAGTGGAAGGTTCTCTATGGGAGCAACTTCAGT
TTTTAGTGAAAAACAAACTATACTCAACTGTAGTCGAGGATTCTGGTTTA
ACGAAATCAAAGGATGGGAAATATCAAGTGAAACTGTCTATTTTCAAAAA
AAAATCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045453XLOC_045453Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073266-exon-scaffold_89-1575043694:195776..196378TCONS_00073266-exon-scaffold_89-1575043694:195776..196378Clytia hemisphaericaexon
TCONS_00073266-exon-scaffold_89-1575043694:193169..194100TCONS_00073266-exon-scaffold_89-1575043694:193169..194100Clytia hemisphaericaexon
TCONS_00073266-exon-scaffold_89-1510915933:195776..196378TCONS_00073266-exon-scaffold_89-1510915933:195776..196378Clytia hemisphaericaexon
TCONS_00073266-exon-scaffold_89-1510915933:193169..194100TCONS_00073266-exon-scaffold_89-1510915933:193169..194100Clytia hemisphaericaexon
TCONS_00073266-exon-scaffold_89-1491911889:195776..196378TCONS_00073266-exon-scaffold_89-1491911889:195776..196378Clytia hemisphaericaexon
TCONS_00073266-exon-scaffold_89-1491911889:193169..194100TCONS_00073266-exon-scaffold_89-1491911889:193169..194100Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_89supercontigscaffold_89:193169..196378 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.910948	0.45734	0.571421	0.521583	0.259672	0.168798	0	0.335489	0	0	0.292056	0.0583083	1.37729	1.0859	0	0	0.579545	0.37929	0	0	1.22262	1.47195	1.02875	0.725694	0.583808	0.730653
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073266 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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