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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073309 ID=TCONS_00073309|Name=TCONS_00073309|organism=Clytia hemisphaerica|type=transcript|length=3134bp aagaaaacaaatgttGTGATGGATTTCTCCCAATTCACCATCTCTGACTA GTCAGTAGACTAGAATTCACTTCCAGCTCTAGCCAATGGCAATTGAGTCC TCGGGTTCCACATGGACCTGTAGCTCAATAGTAGAGCAAATGCCAGCaaa tggcatggttgtgagtttgagtctcgccggatccgttggttttccaacgg ttctggtggctggtcagaagacaacatgagagcgactgtattcacttcac tGTAAAACTAATGTTGGCAAAGAAAAGTTAAGTTTCTTTTAATGAAGTAT GAAATGACCTCAATAAAGCACCCTCTTTTACCTGAATGTAATTCTTTAAA CTTGTTGTTTACCTACCTACTTAGAATGATGTTTAAAATGTCCAAGATTG CTAGAAAACTCATGACAGGAACAAACCTCCAACAACAAATAAGAAAGATA TCTGGTTATGTTGCTGTAGATAATGGAACATTATTTTATGAAAGGCATGG CTTAGGATCGGAAGCTGTTCTTTGTATCCCTGGTGCGCTTGGTTCAACTC AAtcagatttttcataccaattgaGCGAAATGTCAAAAGATTTCACAATG GTTTCATTTGATCCAAGAGGTTATGGAAAATCAAAGAAAGTATTCCGAGa tttatcaaaaaacttttacgAAGATGATGCTAAAGATGCAGTCAAGGTTA TGGAAAAGTTAGGTTTTGAGAAATATTCCATTCTTGGCTGGAGTGATGGT GGTATGGTGGGAATGATAGTGGCAGGAATGGCACCTCATGTTGTAAATAA CCTTGTAGTGTGGGGATCAAACGCCTTTTTGACAGAAAAAGACAAAGCAT TGGGTGTCTCAATGAGAGATTTGAACAAATGGAGTGAAAGAATGAGAAAA CCAATGGAAGATATTTATGGTAAAGAAGGCTTGGAGAAGTTGTGGCATGG ATGGTGTGATGGCTATTCTGCTATTGATGACGTGTGTTGTGATAGCTTAC CCAAAATCAAGTGTCCAACTTTCATTTTACACGGAATGAAAGACCCCATG TTAGATTCCTGTCATTATAAATATCTACATGATAATATCAAAGGTTCAGA ACTTTACATATTTGAAAACGGCAAACATAACATTCACATGAGGTATCATG CAGAATTTAATGAACTGGTCACAGACTTTATCAAGAAAAATAATACATCC AAGCTGTGATGATGTCAGGATTACTTAAAATGTTCTGGATTTACATTATA GTTCCACAAGAAAATTTATTATGAAATCTTTACTATTTGTTATCAAGCAA CGAAATTTTTGAAGGCAACGAGACCAGCCTCATAGTATCAGCCTACTCCA ACATCGATAGTATTTTTTCGGGTTTCTTTACATAATTTAATTAGATTTTA TTAGAtaaattttgtaatattttcaaTGCATTTATATAAAGCttttttgt agatttatattttATCGTTTTTAACTTAAGCTAAAGTTTTCTGCTTTGGT GTTGGTTGATTCGGTTTTAAGgtgtgttttgattttttagagTTTTCTTG AGACTCTTGAGTATTATTTAGACATCGTTTGTCCTTTCGGTGAACCATCA GTTGGAATCTCTTGTTAACCTTTTCGCAGTACATTGAGCAAGTTTCACAA CTAttctcttatttttttcctcgtagataaaaaacaaatcttagGCCAAC CAAACACCAACAATGAAGCCACTTTTTCTTGATGGCGAACAAGTAGAACA ACACTTACCATTACTCGATTTGTTGGATGGCATTGAGAAAAGTTTTGTCA ACTATTCCAATAAAATCGAAGGACTTATTCATCCTCAACGATTAGTTCTT AACGTCCAAAACAATGATTTATTTTTCGTCAAACCAGTTGTATCAACACC CGACAAAACAATTTGTACCAAACTCCTGACTCTATTTCCCGAGAACGAGG CCAAATACCAAGTACCGTCACACCAAGCAATCGTTACTGTTTTTGATTCA GACACAGGTTCACTCCAAGCTGTCATGGATGGTGTTGCAGTGACCGATTT GAGGACAGCTGCTGCAAGTGCAATAGCTCGAAAGCACTTAGCACCTCGGG GTGATTCAAATATTCTAGCTATAGTGGGTACAGGGCATCAAGCTGTCAGT CATGTCAAGTTATTCCGTGCTGTCTCAGGTTACAAAGAGATTCGCGTGTG TAGTCGGAGTAATCCTCAGAGAGCGCAACAATTTGCAAAGCAATGGGGGA TCAAAGCTGCTTCCAGCGTACAGGAAGGTGTTCGAGACGCAGATATAGTT GTCACTGTCACCAAATCTTCGGCACAGCCTGTTGTCTTATACGAATGGCT CAAACCTAACGCCTTAGTTGTCATCGTCGGTTCACCCATATCAAGTCAAC GTGATGTTGACAGTTCTACAATGTTGAACTCAATAGTGGTTGCTGATTCT AAACCGGGTGCTATGGAAACGAGTGGTGACGTAATCCAATCAGGATGTGA AGTTCATGGGGAACTTGGGGAAGTCATTGGTGGAAAAATGAAAGTTGGTT TCGATAAAATGAGAGTTTTTAAGTCTTCTGGTCTAGCTGTGCAGGATTTA GTTGCTGGTAAAATAGTTGTACAGAATTACAGGAAAGCAATTGGAGAATG TTAATGGgaaatatattttctgattcacAGTGGGTATCTCTTGTTGGAGC CCAAGTATGGGAATGTAGTGTTTTACATCTATAGACTTTAGTAATAATAA gtatgtttttcttcttttcgaCCATATTACTTTTTAGATATTGttataaa agtgaaatttttttattagctGAATTTTTTATACATTTAAAATCATAGCG ATTATGCGAAGCTCGACACTTATTGTTTGTGCACTCTGGGGACAATAGCA GTCTATGCTAAAGACGAAACAAGTGTCTGCGGATAGAtacatttaaaatt atacattctACCAGTTTATGAACCAATTCAATtactttctttagaaaaag ctgTTAACGATGAGCACATCGGTTTCGTTTGATTAAAATAATTCGGGTCC GCAGATCCCCTTTTGTTTGATTGCTCTGTTATCTGTATTTCGGGTCTTTC AGATAATGTTGAAACGATATCGCCTGACACCAGC Run BLAST on NCBI protein sequence of TCONS_00073309-protein >TCONS_00073309-protein ID=TCONS_00073309-protein|Name=TCONS_00073309-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MKPLFLDGEQVEQHLPLLDLLDGIEKSFVNYSNKIEGLIHPQRLVLNVQN NDLFFVKPVVSTPDKTICTKLLTLFPENEAKYQVPSHQAIVTVFDSDTGS LQAVMDGVAVTDLRTAAASAIARKHLAPRGDSNILAIVGTGHQAVSHVKL FRAVSGYKEIRVCSRSNPQRAQQFAKQWGIKAASSVQEGVRDADIVVTVT KSSAQPVVLYEWLKPNALVVIVGSPISSQRDVDSSTMLNSIVVADSKPGA METSGDVIQSGCEVHGELGEVIGGKMKVGFDKMRVFKSSGLAVQDLVAGK IVVQNYRKAIGEC Run BLAST on NCBI transcript from alignment at scaffold_9:243986..248068+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073309 ID=TCONS_00073309|Name=TCONS_00073309|organism=Clytia hemisphaerica|type=transcript|length=4083bp|location=Sequence derived from alignment at scaffold_9:243986..248068+ (Clytia hemisphaerica) aagaaaacaaatgttGTGATGGATTTCTCCCAATTCACCATCTCTGACTA
GTCAGTAGACTAGAATTCACTTCCAGCTCTAGCCAATGGCAATTGAGTCC
TCGGGTTCCACATGGACCTGTAGCTCAATAGTAGAGCAAATGCCAGCaaa
tggcatggttgtgagtttgagtctcgccggatccgttggttttccaacgg
ttctggtggctggtcagaagacaacatgagagcgactgtattcacttcac
tGTAAAACTAATGTTGGCAAAGAAAAGTTAAGTTTCTTTTAATGAAGTAT
GAAATGACCTCAATAAAGCACCCTCTTTTACCTGAATGTAATTCTTTAAA
CTTGTTGTTTACCTACCTACTTAGAATGATGTTTAAAATGTCCAAGATTG
CTAGAAAACTCATGACAGGAACAAACCTCCAACAACAAATAAGAAAGATA
TCTGGTTATGTTGCTGTAGATAATGGAACATTATTTTATGAAAGGCATGG
CTTAGGATCGGAAGCTGTTCTTTGTATCCCTGGTGCGCTTGGTTCAACTC
AAtcagatttttcataccaattgaGCGAAATGTCAAAAGATTTCACAATG
GTTTCATTTGATCCAAGAGGTTATGGAAAATCAAAGAAAGTATTCCGAGa
tttatcaaaaaacttttacgAAGATGATGCTAAAGATGCAGTCAAGGTTA
TGGAAAAGTTAGGCATGTCAATTCtcttttttgttgtattttgattattt
ttttagtaTCAATAAAACGAATGAAGGGGGTCCCCTGATAACTGATTCTG
CGACATTGaacatgaaaaaaaagattttaaaaaaagaaagatttttgttt
GGATAAATAATTATGCTTcactttttccctaaaatacTGTTGTTTTTTAT
GTTAGTGCAATCTTCATTGTACCAAGATAATAGGCAATCTCTTACTATAA
ATTTTACACTTTGCTTTTTAGGTTTTGAGAAATATTCCATTCTTGGCTGG
AGTGATGGTGGTATGGTGGGAATGATAGTGGCAGGAATGGCACCTCATGT
TGTAAATAACCTTGTAGTGTGGGGATCAAACGCCTTTTTGACAGAAAAAG
ACAAAGCATTGGGTGTCTCAATGAGAGATTTGAACAAATGGAGTGAAAGA
ATGAGAAAACCAATGGAAGGTAAAATTTTtctgcatttaaaaaaaatctt
attagtcatttaaaaaaaatcttattagTCATTTGTGAAATATACGTTTG
ATACATAAGGGTTTTAAAGTTTTCATGAAGACTGTTAGCCTTTTGGGGTA
AAGGCTTCAAAGAAAATTGTCTACACAGAAAATCTGAACTCCTTTTATAT
TTGAATGAACAtcgtttctagaggggtcaagacccccccttaggtaagag
tccctccttaggaaattcatttaaaatttcacaccccccttagaaaatca
gtataaatgaaacAATTGTGCAAGAGTCATAATTAGGTTAGATGATTTTT
Gatccccccttaggtaagaagaccccccttaactggcaaccccccttagg
aaagtcatacttttaacacccccccccttgcttttggtttatcaaaaccc
aagaccccccctaaatgtaggggggGTAACAACTATGATGAATATTCGAC
CCTGGTTAACTCCAACACAACACCCttctcagctggcacacaacgttgtt
tttaCGTTCAAaatcaaataacgttatttggacgttatgaatgtcaaatg
gacgttgttttgacgttgtgtgccgtctgggttTATTACATTACTAAGGT
TTGGTTGGTGTACCCAACATCATATCATTTTAAAGATTGGTATTTAACTT
TCTTTCCAGATATTTATGGTAAAGAAGGCTTGGAGAAGTTGTGGCATGGA
TGGTGTGATGGCTATTCTGCTATTGATGACGTGTGTTGTGATAGCTTACC
CAAAATCAAGTGTCCAACTTTCATTTTACACGGAATGAAAGACCCCATGT
TAGATTCCTGTCATTATAAATATCTACATGATAATATCAAAGGTTCAGAA
CTTTACATATTTGAAAACGGCAAACATAACATTCACATGAGGTATCATGC
AGAATTTAATGAACTGGTCACAGACTTTATCAAGAAAAATAATACATCCA
AGCTGTGATGATGTCAGGATTACTTAAAATGTTCTGGATTTACATTATAG
TTCCACAAGAAAATTTATTATGAAATCTTTACTATTTGTTATCAAGCAAC
GAAATTTTTGAAGGCAACGAGACCAGCCTCATAGTATCAGCCTACTCCAA
CATCGATAGTATTTTTTCGGGTTTCTTTACATAATTTAATTAGATTTTAT
TAGAtaaattttgtaatattttcaaTGCATTTATATAAAGCttttttgta
gatttatattttATCGTTTTTAACTTAAGCTAAAGTTTTCTGCTTTGGTG
TTGGTTGATTCGGTTTTAAGgtgtgttttgattttttagagTTTTCTTGA
GACTCTTGAGTATTATTTAGACATCGTTTGTCCTTTCGGTGAACCATCAG
TTGGAATCTCTTGTTAACCTTTTCGCAGTACATTGAGCAAGTTTCACAAC
TAttctcttatttttttcctcgtagataaaaaacaaatcttagGCCAACC
AAACACCAACAATGAAGCCACTTTTTCTTGATGGCGAACAAGTAGAACAA
CACTTACCATTACTCGATTTGTTGGATGGCATTGAGAAAAGTTTTGTCAA
CTATTCCAATAAAATCGAAGGACTTATTCATCCTCAACGATTAGTTCTTA
ACGTCCAAAACAATGATTTATTTTTCGTCAAACCAGTTGTATCAACACCC
GACAAAACAATTTGTACCAAACTCCTGACTCTATTTCCCGAGAACGAGGC
CAAATACCAAGTACCGTCACACCAAGCAATCGTTACTGTTTTTGATTCAG
ACACAGGTTCACTCCAAGCTGTCATGGATGGTGTTGCAGTGACCGATTTG
AGGACAGCTGCTGCAAGTGCAATAGCTCGAAAGCACTTAGCACCTCGGGG
TGATTCAAATATTCTAGCTATAGTGGGTACAGGGCATCAAGCTGTCAGTC
ATGTCAAGTTATTCCGTGCTGTCTCAGGTTACAAAGAGATTCGCGTGTGT
AGTCGGAGTAATCCTCAGAGAGCGCAACAATTTGCAAAGCAATGGGGGAT
CAAAGCTGCTTCCAGCGTACAGGAAGGTGTTCGAGACGCAGATATAGTTG
TCACTGTCACCAAATCTTCGGCACAGCCTGTTGTCTTATACGAATGGCTC
AAACCTAACGCCTTAGTTGTCATCGTCGGTTCACCCATATCAAGTCAACG
TGATGTTGACAGTTCTACAATGTTGAACTCAATAGTGGTTGCTGATTCTA
AACCGGGTGCTATGGAAACGAGTGGTGACGTAATCCAATCAGGATGTGAA
GTTCATGGGGAACTTGGGGAAGTCATTGGTGGAAAAATGAAAGTTGGTTT
CGATAAAATGAGAGTTTTTAAGTCTTCTGGTCTAGCTGTGCAGGATTTAG
TTGCTGGTAAAATAGTTGTACAGAATTACAGGAAAGCAATTGGAGAATGT
TAATGGgaaatatattttctgattcacAGTGGGTATCTCTTGTTGGAGCC
CAAGTATGGGAATGTAGTGTTTTACATCTATAGACTTTAGTAATAATAAg
tatgtttttcttcttttcgaCCATATTACTTTTTAGATATTGttataaaa
gtgaaatttttttattagctGAATTTTTTATACATTTAAAATCATAGCGA
TTATGCGAAGCTCGACACTTATTGTTTGTGCACTCTGGGGACAATAGCAG
TCTATGCTAAAGACGAAACAAGTGTCTGCGGATAGAtacatttaaaatta
tacattctACCAGTTTATGAACCAATTCAATtactttctttagaaaaagc
tgTTAACGATGAGCACATCGGTTTCGTTTGATTAAAATAATTCGGGTCCG
CAGATCCCCTTTTGTTTGATTGCTCTGTTATCTGTATTTCGGGTCTTTCA
GATAATGTTGAAACGATATCGCCTGACACCAGC Coding sequence (CDS) from alignment at scaffold_9:243986..248068+ >TCONS_00073309 ID=TCONS_00073309|Name=TCONS_00073309|organism=Clytia hemisphaerica|type=CDS|length=942bp|location=Sequence derived from alignment at scaffold_9:243986..248068+ (Clytia hemisphaerica) ATGAAGCCACTTTTTCTTGATGGCGAACAAGTAGAACAACACTTACCATT ACTCGATTTGTTGGATGGCATTGAGAAAAGTTTTGTCAACTATTCCAATA AAATCGAAGGACTTATTCATCCTCAACGATTAGTTCTTAACGTCCAAAAC AATGATTTATTTTTCGTCAAACCAGTTGTATCAACACCCGACAAAACAAT TTGTACCAAACTCCTGACTCTATTTCCCGAGAACGAGGCCAAATACCAAG TACCGTCACACCAAGCAATCGTTACTGTTTTTGATTCAGACACAGGTTCA CTCCAAGCTGTCATGGATGGTGTTGCAGTGACCGATTTGAGGACAGCTGC TGCAAGTGCAATAGCTCGAAAGCACTTAGCACCTCGGGGTGATTCAAATA TTCTAGCTATAGTGGGTACAGGGCATCAAGCTGTCAGTCATGTCAAGTTA TTCCGTGCTGTCTCAGGTTACAAAGAGATTCGCGTGTGTAGTCGGAGTAA TCCTCAGAGAGCGCAACAATTTGCAAAGCAATGGGGGATCAAAGCTGCTT CCAGCGTACAGGAAGGTGTTCGAGACGCAGATATAGTTGTCACTGTCACC AAATCTTCGGCACAGCCTGTTGTCTTATACGAATGGCTCAAACCTAACGC CTTAGTTGTCATCGTCGGTTCACCCATATCAAGTCAACGTGATGTTGACA GTTCTACAATGTTGAACTCAATAGTGGTTGCTGATTCTAAACCGGGTGCT ATGGAAACGAGTGGTGACGTAATCCAATCAGGATGTGAAGTTCATGGGGA ACTTGGGGAAGTCATTGGTGGAAAAATGAAAGTTGGTTTCGATAAAATGA GAGTTTTTAAGTCTTCTGGTCTAGCTGTGCAGGATTTAGTTGCTGGTAAA ATAGTTGTACAGAATTACAGGAAAGCAATTGGAGAATGTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00073309-exon-scaffold_9-1491911889:243986..244697 | TCONS_00073309-exon-scaffold_9-1491911889:243986..244697 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1510915933:243986..244697 | TCONS_00073309-exon-scaffold_9-1510915933:243986..244697 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1575043694:243986..244697 | TCONS_00073309-exon-scaffold_9-1575043694:243986..244697 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1491911889:244957..245154 | TCONS_00073309-exon-scaffold_9-1491911889:244957..245154 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1510915933:244957..245154 | TCONS_00073309-exon-scaffold_9-1510915933:244957..245154 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1575043694:244957..245154 | TCONS_00073309-exon-scaffold_9-1575043694:244957..245154 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1491911889:245845..248068 | TCONS_00073309-exon-scaffold_9-1491911889:245845..248068 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1510915933:245845..248068 | TCONS_00073309-exon-scaffold_9-1510915933:245845..248068 | Clytia hemisphaerica | exon |
TCONS_00073309-exon-scaffold_9-1575043694:245845..248068 | TCONS_00073309-exon-scaffold_9-1575043694:245845..248068 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_9 | supercontig | scaffold_9:243986..248068 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00073309 vs. Swiss-Prot (Human)
Match: BPHL (Valacyclovir hydrolase OS=Homo sapiens GN=BPHL PE=1 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 2.643e-65 Identity = 108/251 (43.03%), Postives = 165/251 (65.74%), Query Frame = 1
Query: 451 SGYVAVDNGTLFYERHGLGSEAVLCIPGALGSTQSDFSYQLSEMSKD-FTMVSFDPRGYGKSKKVFRDLSKNFYEDDAKDAVKVMEKLGFEKYSILGWSDXXXXXXXXXXXXPHVVNNLVVWGSNAFLTEKDKALGVSMRDLNKWSERMRKPMEDIYGKEGLEKLWHGWCDGYSAID-----DVCCDSLPKIKCPTFILHGMKDPMLDSCHYKYLHDNIKGSELYIFENGKHNIHMRYHAEFNELVTDFIK 1185
S VAV+ L Y++ G G AVL +PG LGS ++DF QL ++K FT+V++DPRGYG S+ RD +F+E DAKDAV +M+ L F+K S+LGWSDGG+ +I A P ++ +V+WG+NA++T++D + +RD++KWSER RKP+E +YG + + W DG ++C LP+++CP I+HG KDP++ H ++H ++KGS L++ GKHN+H+R+ EFN+L DF++
Sbjct: 41 SAKVAVNGVQLHYQQTGEGDHAVLLLPGMLGSGETDFGPQLKNLNKKLFTVVAWDPRGYGHSRPPDRDFPADFFERDAKDAVDLMKALKFKKVSLLGWSDGGITALIAAAKYPSYIHKMVIWGANAYVTDEDSMIYEGIRDVSKWSERTRKPLEALYGYDYFARTCEKWVDGIRQFKHLPDGNICRHLLPRVQCPALIVHGEKDPLVPRFHADFIHKHVKGSRLHLMPEGKHNLHLRFADEFNKLAEDFLQ 291
The following BLAST results are available for this feature:
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