TCONS_00073433 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073433
Unique NameTCONS_00073433
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length414

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073433 ID=TCONS_00073433|Name=TCONS_00073433|organism=Clytia hemisphaerica|type=transcript|length=414bp
aactCACAAACTTcaacaaaaactaaaaacctCACAAATAAATCCTACAC
GACTGACAACACACCTATCATCCACATAGAAATCATTAACAGCATTATGG
ACATGCATCAAAATTTAACAGAAGAAATTTTATCTGGACGACTCTCAACC
AACGCAAAATACATCCAAAACAACGCCACTTCACAAACTACTCCTAATTT
TACTGGCAATTTTAGCCGACTGTTGAATTTAACTTTATCAGATGAAAACA
CCATTTCGCAATCAATAGCCAATGTTACCACGAACAGCATTGGTCAATCC
AATTCAACAGACCGACAGGACAGAAATTTAACCAGTAATCCCAATGCAAC
ATCTCTTGCAGTCAATGTTTCTTCAGATAATTTACATTTCAGACTCCAAA
ATAATAGCATTATA
Run BLAST on NCBI

protein sequence of TCONS_00073433-protein

>TCONS_00073433-protein ID=TCONS_00073433-protein|Name=TCONS_00073433-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
NSQTSTKTKNLTNKSYTTDNTPIIHIEIINSIMDMHQNLTEEILSGRLST
NAKYIQNNATSQTTPNFTGNFSRLLNLTLSDENTISQSIANVTTNSIGQS
NSTDRQDRNLTSNPNATSLAVNVSSDNLHFRLQNNSII
Run BLAST on NCBI

transcript from alignment at scaffold_91:363590..364003

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073433 ID=TCONS_00073433|Name=TCONS_00073433|organism=Clytia hemisphaerica|type=transcript|length=414bp|location=Sequence derived from alignment at scaffold_91:363590..364003 (Clytia hemisphaerica)
TATAATGCTATTATTTTGGAGTCTGAAATGTAAATTATCTGAAGAAACAT
TGACTGCAAGAGATGTTGCATTGGGATTACTGGTTAAATTTCTGTCCTGT
CGGTCTGTTGAATTGGATTGACCAATGCTGTTCGTGGTAACATTGGCTAT
TGATTGCGAAATGGTGTTTTCATCTGATAAAGTTAAATTCAACAGTCGGC
TAAAATTGCCAGTAAAATTAGGAGTAGTTTGTGAAGTGGCGTTGTTTTGG
ATGTATTTTGCGTTGGTTGAGAGTCGTCCAGATAAAATTTCTTCTGTTAA
ATTTTGATGCATGTCCATAATGCTGTTAATGATTTCTATGTGGATGATAG
GTGTGTTGTCAGTCGTGTAGGATTTATTTGTGaggtttttagtttttgtt
gAAGTTTGTGagtt

Coding sequence (CDS) from alignment at scaffold_91:363590..364003

>TCONS_00073433 ID=TCONS_00073433|Name=TCONS_00073433|organism=Clytia hemisphaerica|type=CDS|length=414bp|location=Sequence derived from alignment at scaffold_91:363590..364003 (Clytia hemisphaerica)
TATAATGCTATTATTTTGGAGTCTGAAATGTAAATTATCTGAAGAAACAT
TGACTGCAAGAGATGTTGCATTGGGATTACTGGTTAAATTTCTGTCCTGT
CGGTCTGTTGAATTGGATTGACCAATGCTGTTCGTGGTAACATTGGCTAT
TGATTGCGAAATGGTGTTTTCATCTGATAAAGTTAAATTCAACAGTCGGC
TAAAATTGCCAGTAAAATTAGGAGTAGTTTGTGAAGTGGCGTTGTTTTGG
ATGTATTTTGCGTTGGTTGAGAGTCGTCCAGATAAAATTTCTTCTGTTAA
ATTTTGATGCATGTCCATAATGCTGTTAATGATTTCTATGTGGATGATAG
GTGTGTTGTCAGTCGTGTAGGATTTATTTGTGaggtttttagtttttgtt
gAAGTTTGTGagtt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045577XLOC_045577Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073433-exon-scaffold_91-1491911889:363590..364003TCONS_00073433-exon-scaffold_91-1491911889:363590..364003Clytia hemisphaericaexon
TCONS_00073433-exon-scaffold_91-1510915933:363590..364003TCONS_00073433-exon-scaffold_91-1510915933:363590..364003Clytia hemisphaericaexon
TCONS_00073433-exon-scaffold_91-1575043694:363590..364003TCONS_00073433-exon-scaffold_91-1575043694:363590..364003Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073433-proteinTCONS_00073433-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_91supercontigscaffold_91:363590..364003 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.184423	0	0.416601	0.145836	0	0	0.230517	0.230196	0.836714	2.94811	0.316378	0.389751	0.266322	0	0.19251	0.334653	0.734543	0.19843	0.180401	0	0.663321	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073433 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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