TCONS_00073471 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073471
Unique NameTCONS_00073471
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length839

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073471 ID=TCONS_00073471|Name=TCONS_00073471|organism=Clytia hemisphaerica|type=transcript|length=839bp
CTGTTGGTTAACTGAGTCTGtaccataatttttttttacttttgcagATA
CATGACAGTTTTTTCCGGATAACTTGTTGATTACAGGCCAgactttgtta
atttttttcttgttgcTAGCCTCTGTAAGTTCAGCAAGTTGGTTTTCAAG
ATGTTTCCTTTCATCATCTTTATATGATTGATTCAATGAAACATTTAGCT
GTTTTAGAGCACTTATCCATTAACAAACAAATTTCGAGTaccaatatttc
aatatttttttataaaaagcctTTGAAAACTCAATAACTGCTTGAGtatt
ttgattgttattgattacttgGATAACCAATTAATTATATACCGTAAGTT
Gcgtaatgtcgacatccctgttctaatttcgacacccttctttgttagag
ataggaataatgggAAGGCACATTCTGATTGGAGGGAGAAAACAATAGAG
GGTAAGCCTGTTGAAACACATAATATACATATACTCTGGCCTAATTTTTT
AGTCCTAAGTGGGATTCGACTTTTCAGGCAAaggatttttgtccatttta
tacTTAACCACAACTCATTCATTCACGTCTATagtttttttgggttttct
ttggattcaATTTTCTTCTCTCAACTGTAAAAAAGTTTGTAACGCTCTGG
ACGTAATTATTTCAGCCCATTCTAATTTGCCAAAACCCAATTTCAACCTC
ATTGTAACACACCCAGAAAAGTACTATACTGAGTTATTATCATCAACccg
aaaaatatgagcaatctgattggcttttttaagcatgTTTGGGACGGTTT
AGAATCCAACCTTTTTGTATGCTAAATCGGAAATACATT
Run BLAST on NCBI

transcript from alignment at scaffold_92:8044..8882

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073471 ID=TCONS_00073471|Name=TCONS_00073471|organism=Clytia hemisphaerica|type=transcript|length=839bp|location=Sequence derived from alignment at scaffold_92:8044..8882 (Clytia hemisphaerica)
AATGTATTTCCGATTTAGCATACAAAAAGGTTGGATTCTAAACCGTCCCA
AAcatgcttaaaaaagccaatcagattgctcatatttttcggGTTGATGA
TAATAACTCAGTATAGTACTTTTCTGGGTGTGTTACAATGAGGTTGAAAT
TGGGTTTTGGCAAATTAGAATGGGCTGAAATAATTACGTCCAGAGCGTTA
CAAACTTTTTTACAGTTGAGAGAAGAAAATtgaatccaaagaaaacccaa
aaaaactATAGACGTGAATGAATGAGTTGTGGTTAAgtataaaatggaca
aaaatcctTTGCCTGAAAAGTCGAATCCCACTTAGGACTAAAAAATTAGG
CCAGAGTATATGTATATTATGTGTTTCAACAGGCTTACCCTCTATTGTTT
TCTCCCTCCAATCAGAATGTGCCTTcccattattcctatctctaacaaag
aagggtgtcgaaattagaacagggatgtcgacattacgCAACTTACGGTA
TATAATTAATTGGTTATCcaagtaatcaataacaatcaaaataCTCAAGC
AGTTATTGAGTTTTCAAaggctttttataaaaaaatattgaaatattggt
ACTCGAAATTTGTTTGTTAATGGATAAGTGCTCTAAAACAGCTAAATGTT
TCATTGAATCAATCATATAAAGATGATGAAAGGAAACATCTTGAAAACCA
ACTTGCTGAACTTACAGAGGCTAgcaacaagaaaaaaattaacaaagtcT
GGCCTGTAATCAACAAGTTATCCGGAAAAAACTGTCATGTATctgcaaaa
gtaaaaaaaaattatggtaCAGACTCAGTTAACCAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045599XLOC_045599Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073471-exon-scaffold_92-1491911889:8044..8882TCONS_00073471-exon-scaffold_92-1491911889:8044..8882Clytia hemisphaericaexon
TCONS_00073471-exon-scaffold_92-1510915933:8044..8882TCONS_00073471-exon-scaffold_92-1510915933:8044..8882Clytia hemisphaericaexon
TCONS_00073471-exon-scaffold_92-1575043694:8044..8882TCONS_00073471-exon-scaffold_92-1575043694:8044..8882Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_92supercontigscaffold_92:8044..8882 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0563139	0.0549149	0.0637615	0.249523	0	0.120021	0	0.0677804	0.0474546	0.0587802	0	0	0.0374526	0.0388949	0.0639538	0.102948	0.0422746	0	0	0	0.108895	0	0	0	0	0.0539606	0	0.329634	0.125008	0.127363
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073471 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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