TCONS_00073551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073551
Unique NameTCONS_00073551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073551 ID=TCONS_00073551|Name=TCONS_00073551|organism=Clytia hemisphaerica|type=transcript|length=2582bp
TTAAAACAAGAATAAACCTAAGGTTgattaattatttttaataaaacatT
TCTGATTCTTTTTTATAGTGAGTTAACAAAGATAGAAAAATAACATGTCT
GTGACTGCTCATCATGGGGAATTTATTGGGGAAATCAACTTNTCTGATTC
TTTTTTATAGTGAGTTAACAAAGATAGAAAAATAACATGTCTGTGACTGC
TCATCATGGGGAATTTATTGGGGAAATCAACTTTAGTGCACCATCCAGAT
GAACATATAGGAATCATCGTATCACTTATGCTGAAGGACATGATATCCTT
CCTTTTGCCGTATGCAAGGCGtatatttcaaagaaaaactacTGGCCCGT
CAGCTTCAATAAAATGGTTACAGCAACGTCAATTTGTTGCGGCCCATGTG
AAATCTGCATTTGAGAAAGTGAAAGTTTATGTTATTAATGATGAAGAATT
ATGCAATCGACTTGTTGATCAACAAATGTTACAGCCTGGAAGACCTGTCC
ATTTTATTGGTCTGGACTGTGAATGGGAGTCACGCAAAAAGGATGGCATC
GCTTTGCTACAAATCTCATCTGGTAATGATTGTATTTTATACAGAACATG
CCAAACACAAGGACATATcccgcaaaatttgaagaaattatTGGAAGATC
GGAAAGTGTTGAAGTTTGGTGTTGGCATTGAGGAGGATGTGAGAAGGCTT
CGTTTACATGGTGTGCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGC
TCACCGCTGTGCACCTGGTGTCAGTGGTGGAAANGAAGGCTTCGTTTACA
TGGTGTGCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCT
GTGCACCTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAG
GAATTGTACCAATGGAATAGTCTAAGCGCGCTATCTTTGAACACGTTGGA
AATGCAGTTGAGCAAGAACTACACTGTCCGTTGTGGTAACTGGGAAGCGC
AATCCCTCTCGCGAAAACAGATCATGTATGCTGCAAAAGATGCCATCGTA
TCTTTAGAAATCTTTTACGCTCTCGTTTTGCTACGTCGAGTTCGACGCCG
TCAAGGGCGTGACGTATTAGACGGGATGTTTGAATCTTCAGTCGATTTTC
ATAAAATGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCATGTTTCTACTAC
TCTCATAGTAAAGACACTCTTAATGATGTGGATGCCATTTTGCCGACGGA
TACACTGAGAACGTCACCTTCTCAAAGTTTAACAGAACTTTCTCACTCCT
TATGTCAAGGGATAGTAGACATCAAACATAAACCGAAACTGGTGATGAAT
CACAATGTGCAGAAGACAGCATCCAGAGCTTACTCCACAACTAAACAAAC
AACAACTCAACTAGACAAAACATCTAAACGTTATAACCATCAATGTAGAG
ATAAACCATTGTATGAAAACTGCTTTCTGATTGGTCCAGATAAACAAGTA
CTGGCAACTGTCAATCGTACAAAAGCAGAATGGTATTTACACAAAAATAT
TGgAGTCGTTGAAAAGGATGAACCATTCACTGTCCGGTTATTATTCGAGC
CTTCCGGAAAACCAAAACCGGACGCTGACTACTACACAACAGTCAAAGAA
AACGTATGTACCGTGTGTGGTAGTACCGAGAATTTCGTCAAGAAGAACAT
CATTCCTCATGATTATCGGAAATATTTTCCACAGCAGATGAAAGACCACA
TGTCACATGATGTCCTTTTGTTCTGTATAGATTGTCATCGTACTGCACAA
TACTTTGACGACCAAGTACGACAAGACCTTGCCACCAAGTATAAAGCTCC
CCTCGGTACCAAACAAAATATGTTTAAAACGGACAACCCTCAGCTCGGGC
GTGTGCGATCAGCCGCCAAAGCGCTATTAAAGAATTCTGCTAACATTCCA
ACAGCTAGACGTGAAGAACTAGAAGCcataattttaaaccacttCAAGGT
GAATTCGGTTAATACACAATTACTTAAAGACACTATGGATATGGATATAC
GCGTTGAGAACAACAAATTCTTAGGATTACATGGCGAGAGGGTCGTAAAA
GGGCTGTTAGAAGAGAATGATTTAATAGAATTCATTAAGATGTGGAGACA
ACGTTTCTTGGATACAATGAAACCCAAATTTCTACCACCGCTTTGGTCTG
TTGATCACAATCTACAGAAATTCAACGCCTCAAATTGAACTATCCTGATT
CTATATTCACTATTGAACTTTTAATTGATAGCTTTCCATTTCATTGAATT
TCAtcggatttttcataaaatGTTCAGTCATATTTTCCATAGGAGCCTAT
GAAGCATTTCCCGTCCTCTAAACTTTGTCTCGctaatgttttgttctttt
caaagaaataaagcGGCCCCCAATACCTTGTActttaaaagtcttttttt
tctgAATTGAAATTCTTGGATCATCACTTTTGACGCTGTGTCCTGCcgta
ttttgttgttgatttttacaTTGATTTTCTAGGTATAACTAATAGATTTA
TatttttagaaacaaaatttCTTAGATATTTT
Run BLAST on NCBI

transcript from alignment at scaffold_94:455851..461145-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073551 ID=TCONS_00073551|Name=TCONS_00073551|organism=Clytia hemisphaerica|type=transcript|length=5295bp|location=Sequence derived from alignment at scaffold_94:455851..461145- (Clytia hemisphaerica)
TTAAAACAAGAATAAACCTAAGGTTGATTAATTATTTTTAATAAAACATT
TCTGATTCTTTTTTATAGTGAGTTAACAAAGATAGAAAAATAACATGTCT
GTGACTGCTCATCATGGGGAATTTATTGGGGAAATCAACTTNTCTGATTC
TTTTTTATAGTGAGTTAACAAAGATAGAAAAATAACATGTCTGTGACTGC
TCATCATGGGGAATTTATTGGGGAAATCAACTTTAGTGCACCATCCAGAT
GAACATATAGGAATCATCGTATCACTTATGCTGAAGGACATGATATCCTT
CCTTTTGCCGTATGCAAGGCGTATATTTCAAAGAAAAACTACTGGCCCGT
CAGCTTCAATAAAATGGTTACAGCAACGTCAATTTGTTGCGGCCCATGTG
AAATCTGCATTTGAGAAAGTGAAAGTTTATGTTATTAATGATGAAGAATT
ATGCAATCGACTTGTTGATCAACAAATGTTACAGCCTGGAAGACCTGTCC
ATTTTATTGGTCTGGACTGTGAATGGGAGTCACGCAAAAAGGATGGCATC
GCTTTGCTACAAATCTCATCTGGTAATGATTGTATTTTATACAGAACATG
CCAAACACAAGGACATATCCCGCAAAATTTGAAGAAATTATTGGAAGATC
GGAAAGTGTTGAAGTTTGGTGTTGGCATTGAGGAGGATGTGAGAAGGCTT
CGTTTACATGGTGTGCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGC
TCACCGCTGTGCACCTGGTGTCAGTGGTGGAAANGAAGGCTTCGTTTACA
TGGTGTGCAAGTGAAAGGATTTGTTGACTTGCGGAACTTGGCTCACCGCT
GTGCACCTGGTGTCAGTGGTGGAAAACCTGACTTTGACAACCCTGAGGAG
GAATTGTAAGTATTACCTGTTGGTGCAGGTTGGTGTCNGCAAGTGAAAGG
ATTTGTTGACTTGCGGAACTTGGCTCACCGCTGTGCACCTGGTGTCAGTG
GTGGAAAACCTGACTTTGACAACCCTGAGGAGGAATTGTAAGTATTACCT
GTTGGTGCAGGTTGGTGTCGAATAGAGAAGTCTTTGAAAACGGGAAATAG
AGAGCTAGTCTAGTACTCAGTTGTCCTAAGTACTGATCACTACTAGGTAA
AAAACATCCATGTTCAATGTTTTTCATTGACTGTCAATTGCAAATTATTG
ACAAAAAATTCTTTATATTGACTTTCAATTGGTTTTTTGAAAAGTCAAAG
AATAATATTGACCGTTGATATTGATTTTAAACTTCTCACGTAATCGTGTT
TTGAGCTAGCATCGCCTGTACATCATTCGTACATGTCAAGGTTTTTACGT
GTGTTAAAAACAATGCTTATTGTGTATGTTTTGCCTCACCACTGTCTTAT
AAAATCATATTTTGTTGCAAGNACATGTCAAGGTTTTTACGTGTGTTAAA
AACAATGCTTATTGTGTATGTTTTGCCTCACCACTGTCTTATAAAATCAT
ATTTTGTTGCAAGGAGGTGTTTCAATTTCTGATTCAATTCAAGCTTAAGA
ACAGTACTTCCTATAATTTGTGATAATATAAATCTTTCAAATTTTGTTAC
TTTAGGTACCAATGGAATAGTCTAAGCGCGCTATCTTTGAACACGTTGGA
AATGCAGTTGAGCAAGAACTACACTGTCCGTTGTGGTAACTGGGAAGCGC
AATCCCTCTCGCGAAAACAGATCATGTATGCTGCAAAAGATGCCATCGTA
TCTTTAGAAATCTTTTACGCTCTCGTTTTGCTACGTCGAGTTCGACGCCG
TCAAGGGCGTGACGTATTAGACGGGATGTTTGAATCTTCAGTCGATTTTC
ATAAAATGCTGCAAGGTTTTCAGGAGAGCTCCTCTTCATGTTTCTACTAC
TCTCATAGTAAAGACACTCTTAATGATGTGGATGCCATTTTGCCGACGGA
TACACTGAGAACGTCACCTTCTCAAAGTTTAACAGAACTTTCTCACTCCT
TATGTCAAGGGATAGTAGACATCAAACATAAACCGAAACTGGTGATGAAT
CACAATGTGCAGAAGACAGCATCCAGAGCTTACTCCACAACTAAACAAAC
AACAACTCAACTAGACAAAACATCTAAACGTTATAACCATCAATGTAGAG
ATAAACCATTGTATGAAAACTGCTTTCTGATTGGTCCAGATAAACAAGTA
CTGGCAACTGTCAATCGTACAAAAGCAGAATGGTATTTACACAAAAATAT
TGGTATGGAAGTTTTGTAGTGTTGTCTAAGGTCGATTGCATATCGTTTTT
CACTTTTAGATACAACCATATGTATGACTGAATATTAGTAAGGGGCTTTC
TTAGAACTTGTAACATAATTTCCGGAGTAAAAGTTTTTGACTGTGTAAAA
AAAACTTAGAGACTTTTCTGAAAAGGCTTACGTGAATGTTTTTGTGCTAA
AACTGTCAGGTCAGGAAAGCACGTGTAAAAATGAACATTTTTTGGTACCA
TTGGAGTATTAAATTTCGAGGAAAAACATACTACAAGCAAAATATCCCTG
ACTCGATTATATTTTTTAAGGTCGAAGTCCTGTCAGTTTCATTACAACTG
ACGTCAGATTCCATACACTTGATATAACAGAATTTCTAACTTTTGTTATG
TTTTCTTGGGATATGTAGTATGTACACTATTCCGCTCAGAATTTCATGCT
TTATCTGAATGAATTTTATCATTCACTTAATTCATTCGTCCAGGAGTCAT
CCACATAGTACGTGCGCAAAAACTCTCCAGATTTTTGCCACCCCTCCCCC
TTGTACACAGGGAACAATTTAGAAATGCCGTCATTCAAACAATAGACGTA
CGCTTTTGCTAAACCCCCTCTCCCCTCTTCGCTGCGTACATACTATAGTG
ATGGCCCCAAGGCATAATTCATGTACCACCTGTCGTGTACCCTATGTCCT
AAGGAATGTTCCCTTACTTATAGTGTGTACGACATTTTTGATAAAAGTCA
CGCAGTTTCTTTTTGAAAAGTTTATTTTTAGGTTTCTTACCAAGCAAGAG
ATATCATTTAATCGGATTTAAATTTCGCGGTATTTAAATTTTCGGNACGA
CATTTTTGATAAAAGTCAGGTAGTTTCTTTTTGAAAAGTTTATTTTTAGG
TTTCTTACCAAGCAAGAGATATCATTTAATCGGATTTAAATTTCGCGGTA
TTTAAATTTTCGGGATTTATTTAGCGGGTCAGCATTTTCAAATATTTTGC
GTGGATTTAACTTCGGAAAGCGGCGAATAAAATTCAGTTGAGAATGACAC
TGAAAAACGCCAATTTGTTAAAAATCTCCCGAATCAACTTCCTCACGGGA
TTCTGTGCATTTTTTCCGCGAAAAAAGGGAAAAATTTGCGAAAACGTGAA
ATTAAATCTCACAAAAATTAATCCTAATCTTCAGTTTTCTGAATAGATTG
ATGAATTTATTTTTTATTAATTTTCAGGAGTCGTTGAAAAGGATGAACCA
TTCACTGTCCGGTTATTATTCGAGCCTTCCGGAAAACCAAAACCGGACGC
TGACTACTACACAACAGTCAAAGAAAACGTATGTACCGTGTGTGGTAGTA
CCGAGAATTTCGTCAAGAAGAACATCATTCCTCATGATTATCGGAAATAT
TTTCCACAGCAGATGAAAGACCACATGTCACATGATGTCCTTTTGTTCTG
TATAGATTGTCATCGGTGAGATTGCTTTTTTTTCTTCTGATAGAAAGGGT
TTCATATGACGGTTATGATATGATGATACTATTGAGATGATAATCTGATA
GATTTCCCACTTTAATGCTCATAATGATCTGTATTGCCTTTTCTGAAATT
CAGTTGTAATCTAAAATCAAGTCATACACCATGTTCACACGTTAATGTTC
CGTTTCGCTCCGGTATGATTTTCGTTACGGATCGAGTGTGTTTATATTGG
TTTTGGTACGTGTTCGGAGCAAGAAAACGGAGTGCAGTTCCGTTCTGAAG
GCCGGTGTCCACTTTCGCGCGAAACTTTTCACGTTATTTGTAACGTCATT
GGTTGATTGAAAAAAGAAGCAATTCCATTGTTCAAAATTGACGTAACGGT
TGAAAAAAGTTTAACTCCCTTCAACTTTTTTTTTGTTCGCGCGAAACTTT
TTTATGACGTAATCCTTTCTTCAGGCAAAAACGGTTAAGAAAAAATCTTT
CGCGCGCTTCACACGAAAGTGGACACCGGCCTTGATGAAAAAAGTGGAGC
GAAACCGTTTCGATCTGTTTTGCTTTGTAATGTCTTCTTTTTTGACGTTT
CCAATTTTGACGTTCACACTTGTTTCGGAACCGTTTCGTCTGAACATAGG
CATAATCTATTTCCTGCTCTTTGCCACTAGTGGGACTAGAATATATCTTG
TCAGCATAAACTTCTCTTTATTAGGAAGAAGAATATGGGTTGACGTATTT
TAGTTTTATATCCACCTAGTTACTCAAATGCGTACGATTATTTACTTTTT
CAGTACTGCACAATACTTTGACGACCAAGTACGACAAGACCTTGCCACCA
AGTATAAAGCTCCCCTCGGTACCAAACAAAATATGTTTAAAACGGACAAC
CCTCAGCTCGGGCGTGTGCGATCAGCCGCCAAAGCGCTATTAAAGAATTC
TGCTAACATTCCAACAGCTAGACGTGAAGAACTAGAAGCCATAATTTTAA
ACCACTTCAAGGTGAATTCGGTTAATACACAATTACTTAAAGACACTATG
GATATGGATATACGCGTTGAGAACAACAAATTCTTAGGATTACATGGCGA
GAGGGTCGTAAAAGGGCTGTTAGAAGAGAATGATTTAATAGAATTCATTA
AGATGTGGAGACAACGTTTCTTGGATACAATGAAACCCAAATTTCTACCA
CCGCTTTGGTCTGTTGATCACAATCTACAGAAATTCAACGCCTCAAATTG
AACTATCCTGATTCTATATTCACTATTGAACTTTTAATTGATAGCTTTCC
ATTTCATTGAATTTCATCGGATTTTTCATAAAATGTTCAGTCATATTTTC
CATAGGAGCCTATGAAGCATTTCCCGTCCTCTAAACTTTGTCTCGCTAAT
GTTTTGTTCTTTTCAAAGAAATAAAGCGGCCCCCAATACCTTGTACTTTA
AAAGTCTTTTTTTTCTGAATTGAAATTCTTGGATCATCACTTTTGACGCT
GTGTCCTGCCGTATTTTGTTGTTGATTTTTACATTGATTTTCTAGGTATA
ACTAATAGATTTATATTTTTAGAAACAAAATTTCTTAGATATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045653XLOC_045653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073551-exon-scaffold_94-1575043694:460241..461145TCONS_00073551-exon-scaffold_94-1575043694:460241..461145Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1575043694:458894..459540TCONS_00073551-exon-scaffold_94-1575043694:458894..459540Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1575043694:457431..457668TCONS_00073551-exon-scaffold_94-1575043694:457431..457668Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1575043694:455851..456642TCONS_00073551-exon-scaffold_94-1575043694:455851..456642Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1510915933:460241..461145TCONS_00073551-exon-scaffold_94-1510915933:460241..461145Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1510915933:458894..459540TCONS_00073551-exon-scaffold_94-1510915933:458894..459540Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1510915933:457431..457668TCONS_00073551-exon-scaffold_94-1510915933:457431..457668Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1510915933:455851..456642TCONS_00073551-exon-scaffold_94-1510915933:455851..456642Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1491911889:460241..461145TCONS_00073551-exon-scaffold_94-1491911889:460241..461145Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1491911889:458894..459540TCONS_00073551-exon-scaffold_94-1491911889:458894..459540Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1491911889:457431..457668TCONS_00073551-exon-scaffold_94-1491911889:457431..457668Clytia hemisphaericaexon
TCONS_00073551-exon-scaffold_94-1491911889:455851..456642TCONS_00073551-exon-scaffold_94-1491911889:455851..456642Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:455851..461145 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.8081	12.4822	3.65179	2.67953	21.3394	15.7886	13.9947	16.1344	6.45491	9.8891	4.90141	6.84674	6.30097	7.30937	7.03946	8.5371	13.9975	9.38368	2.57138	1.79385	5.26222	7.84278	17.45	15.9696	15.1498	16.6113	3.17864	1.62242	9.84438	13.1072
Blast
[Close]
BLAST of TCONS_00073551 vs. Swiss-Prot (Human)
Match: EXD2 (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens GN=EXD2 PE=1 SV=2)

HSP 1 Score: 262.307 bits (669), Expect = 5.620e-76
Identity = 133/331 (40.18%), Postives = 202/331 (61.03%), Query Frame = 1 
Query: 1303 CQGIVDIKHKPKLV--MNHNVQKTASRAYXXXXXXXXXXXXXXXRYNHQCRD-----------------KPLYENCFLIGPDKQVLATVNRTKAEWYLHKNIGVVEKDEPFTVRLLFEPSGKPKPDADYYTTVKENVCTVCGSTENFVKKNIIPHDYRKYFPQQMKDHMSHDVLLFCIDCHRTAQYFDDQVRQDLATKYKAPLGTKQNMFKTDNPQLGRVRSAAKALLKNSANIPTARREELEAIILNHFKVNSVNTQLLKDTMDMDIRVENNKFLGLHGERVVK-----GLLEENDLIEFIKMWRQRFLDTMKPKFLPPLWSVDHNLQKF 2223
            CQG+VDI  + K +  +   V   A+ +    +   +++D      NHQ RD                  PLY+NCFL  PD Q L T +R KA+WYL K IG +  +EPF V+L FEP+G+P+   DYY  VKEN+C VCG  +++++KN+IPH+YRK+FP +MKDH SHDVLL C  CH  + Y+D+ ++Q LA +++AP+G+++ +   ++P+  +VRS A+ALL N+ ++PT R+EEL   +   +  + V  ++L++   ++ R+ N  ++  HG +VV+     GL     L++    WRQ FLD+M+PK LP  WSVDHN QK 
Sbjct:  284 CQGVVDIPFRSKGMSRLGEEVNGEATESQQKPRNKKSKMDGMVP-GNHQGRDPRKHKRKPLGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRKAQWYLDKGIGELVSEEPFVVKLRFEPAGRPESPGDYYLMVKENLCVVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDPERRQVRSGARALL-NAESLPTQRKEELLQALREFYNTDVVTEEMLQEAASLETRISNENYVP-HGLKVVQCHSQGGL---RSLMQLESRWRQHFLDSMQPKHLPQQWSVDHNHQKL 608
The following BLAST results are available for this feature:
BLAST of TCONS_00073551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXD25.620e-7640.18Exonuclease 3'-5' domain-containing protein 2 OS=H... [more]
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