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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073563 ID=TCONS_00073563|Name=TCONS_00073563|organism=Clytia hemisphaerica|type=transcript|length=883bp
TTTCTTTTGAGATTGAGACTTCTAAGGAGCGTGAATTGCAGGAAAAAATA
GATCTGcttgaaaaaaagaattcagAACTCATATCAGAATTTGAAGCAAA
AGTTTATACCCTGGAAAAGAACAATTCTGAACTAACTAAGAACGTTAAGA
ATTTAACTCGTGCAATTAAATCATCGAATGGAATTGTTCAGGCACAAAAG
gtgtttttgggaaaattatgtgtattgagaaaaaaatgtgaGTGTAAGAA
ATCAATGGAGGATCAATTGCTTACCTCTGActgtaaaacaaaattttaca
cTGGAATAGAAAATTTGCAATCGTTTTGTAACCTTCATGACTTATGTAAG
CCTTATATCATGAACAAATCCAAAGAGAACATCGCTTGGGGGTGGCTACA
AACGCAACTtcaagaaaaaggtcacaaaactTGGGAGAAAACCGAAGCTC
TCATCAGAAGATGAGCTATTGTTGACCCTGATGAAGCTTCACCTTGGTTT
GATGGAGGAGGATTTGGCTCATCGTTTTGGTACATCAACCACACACGTCT
CCAACACCTTCATAACCTGGATTAAAGTGCTTTTCCTAGTTTTACGCAAT
ATTGTTTTTGTGCCTAACCAGGGTCAGTTAAACTTCACTCAACCACAACG
TTTTGACAAAAATAGGGATGTTTGCCAAATCATAGACTGTTTTGAATGCT
TTATTGAAACGCCAAAGTCCTTAGATCTGCAAAAACTTTCGTGGTCAGAA
TACAAACACCACAACACTATCAAAGTTCTGGTTGGGTGCTCGCCAAATTC
TTCAGTGACCTTCATATCTCAATCGTTCCCTGGAAGCATCAGTGACAAAG
GAATAGTAAAAAACtctgaattttttaaatctg Run BLAST on NCBI protein sequence of TCONS_00073563-protein >TCONS_00073563-protein ID=TCONS_00073563-protein|Name=TCONS_00073563-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
SFEIETSKERELQEKIDLLEKKNSELISEFEAKVYTLEKNNSELTKNVKN
LTRAIKSSNGIVQAQKVFLGKLCVLRKKCECKKSMEDQLLTSDCKTKFYT
GIENLQSFCNLHDLCKPYIMNKSKENIAWGWLQTQLQEKGHKTWEKTEAL
IRR Run BLAST on NCBI transcript from alignment at scaffold_94:175934..176816 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073563 ID=TCONS_00073563|Name=TCONS_00073563|organism=Clytia hemisphaerica|type=transcript|length=883bp|location=Sequence derived from alignment at scaffold_94:175934..176816 (Clytia hemisphaerica)
cagatttaaaaaattcagaGTTTTTTACTATTCCTTTGTCACTGATGCTT
CCAGGGAACGATTGAGATATGAAGGTCACTGAAGAATTTGGCGAGCACCC
AACCAGAACTTTGATAGTGTTGTGGTGTTTGTATTCTGACCACGAAAGTT
TTTGCAGATCTAAGGACTTTGGCGTTTCAATAAAGCATTCAAAACAGTCT
ATGATTTGGCAAACATCCCTATTTTTGTCAAAACGTTGTGGTTGAGTGAA
GTTTAACTGACCCTGGTTAGGCACAAAAACAATATTGCGTAAAACTAGGA
AAAGCACTTTAATCCAGGTTATGAAGGTGTTGGAGACGTGTGTGGTTGAT
GTACCAAAACGATGAGCCAAATCCTCCTCCATCAAACCAAGGTGAAGCTT
CATCAGGGTCAACAATAGCTCATCTTCTGATGAGAGCTTCGGTTTTCTCC
CAagttttgtgacctttttcttgaAGTTGCGTTTGTAGCCACCCCCAAGC
GATGTTCTCTTTGGATTTGTTCATGATATAAGGCTTACATAAGTCATGAA
GGTTACAAAACGATTGCAAATTTTCTATTCCAgtgtaaaattttgtttta
cagTCAGAGGTAAGCAATTGATCCTCCATTGATTTCTTACACtcacattt
ttttctcaatacacataattttcccaaaaacacCTTTTGTGCCTGAACAA
TTCCATTCGATGATTTAATTGCACGAGTTAAATTCTTAACGTTCTTAGTT
AGTTCAGAATTGTTCTTTTCCAGGGTATAAACTTTTGCTTCAAATTCTGA
TATGAGTTctgaattctttttttcaagCAGATCTATTTTTTCCTGCAATT
CACGCTCCTTAGAAGTCTCAATCTCAAAAGAAA Coding sequence (CDS) from alignment at scaffold_94:175934..176816 >TCONS_00073563 ID=TCONS_00073563|Name=TCONS_00073563|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_94:175934..176816 (Clytia hemisphaerica)
TCATCTTCTGATGAGAGCTTCGGTTTTCTCCCAagttttgtgaccttttt
cttgaAGTTGCGTTTGTAGCCACCCCCAAGCGATGTTCTCTTTGGATTTG
TTCATGATATAAGGCTTACATAAGTCATGAAGGTTACAAAACGATTGCAA
ATTTTCTATTCCAgtgtaaaattttgttttacagTCAGAGGTAAGCAATT
GATCCTCCATTGATTTCTTACACtcacatttttttctcaatacacataat
tttcccaaaaacacCTTTTGTGCCTGAACAATTCCATTCGATGATTTAAT
TGCACGAGTTAAATTCTTAACGTTCTTAGTTAGTTCAGAATTGTTCTTTT
CCAGGGTATAAACTTTTGCTTCAAATTCTGATATGAGTTctgaattcttt
ttttcaagCAGATCTATTTTTTCCTGCAATTCACGCTCCTTAGAAGTCTC
AATCTCAAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073563-exon-scaffold_94-1491911889:175934..176816 | TCONS_00073563-exon-scaffold_94-1491911889:175934..176816 | Clytia hemisphaerica | exon |
| TCONS_00073563-exon-scaffold_94-1510915933:175934..176816 | TCONS_00073563-exon-scaffold_94-1510915933:175934..176816 | Clytia hemisphaerica | exon |
| TCONS_00073563-exon-scaffold_94-1575043694:175934..176816 | TCONS_00073563-exon-scaffold_94-1575043694:175934..176816 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_94 | supercontig | scaffold_94:175934..176816 . |
Blast
The following BLAST results are available for this feature:
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