TCONS_00073578 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073578
Unique NameTCONS_00073578
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073578 ID=TCONS_00073578|Name=TCONS_00073578|organism=Clytia hemisphaerica|type=transcript|length=746bp
CACACTTAAAAATGTCTCATTTAAACGTAGATGATAAGACAAAGGCTTCC
TTTGGCAGGTTCTATGTCTCCAACATGTACAGACTTGTATGGGGCGCAGA
ACGATATTTCCTCGGAAAACAACAAGAATTGGCTTTGTATAAGTCTTACC
AGGATTGGTATCAGTTTGTTGAAAATTTACTGGAGGTTGATGTTCGATAT
GGGAATAAACAATTTACCTTTATTAAGCTTCAGAAACTTGATGGATCTTG
GATGAACATCGGTTCAGCAGATGGAAATGTCTACACTGTTTCGAACCAAG
GACTAAAACATTATGTGAAGGGAAGTGGATCCATACCTGCACATGTTAAT
TTCTTTATACTGGATCCAGTAAGTCTTGGACAAAGCATTGAGTTGAAGAA
AGACACTGCCAATACCATGTTAGCTTGGAAAATACCAACAAATGAACCGA
AATTCAGGAGTTTGCATCCGTTCATAATTTTGGGAATCATGGAATGAGTT
AAAAGACTATTCAAATACCCCAAATACGGTCGTTGGTTTTTATCTGAATT
CTGTTCTCTGTTATCTTGAGTTGATATGACCTATGAGGTTGTTGATGAAT
GCTGTACAAGAACTCTAGCTTCACATCCTTGTGTTATGAAGCATTGTAGG
TGTAAATACACATGTAGGTGTTAATTTACCGAATAAAATTTCCGAGAAAT
ATGAATGAGTAATAtagaatttgaaaagaaagaggTCAAAACatcg
Run BLAST on NCBI

protein sequence of TCONS_00073578-protein

>TCONS_00073578-protein ID=TCONS_00073578-protein|Name=TCONS_00073578-protein|organism=Clytia hemisphaerica|type=polypeptide|length=164bp
HLKMSHLNVDDKTKASFGRFYVSNMYRLVWGAERYFLGKQQELALYKSYQ
DWYQFVENLLEVDVRYGNKQFTFIKLQKLDGSWMNIGSADGNVYTVSNQG
LKHYVKGSGSIPAHVNFFILDPVSLGQSIELKKDTANTMLAWKIPTNEPK
FRSLHPFIILGIME
Run BLAST on NCBI

transcript from alignment at scaffold_94:329861..330606

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073578 ID=TCONS_00073578|Name=TCONS_00073578|organism=Clytia hemisphaerica|type=transcript|length=746bp|location=Sequence derived from alignment at scaffold_94:329861..330606 (Clytia hemisphaerica)
cgatGTTTTGAcctctttcttttcaaattctaTATTACTCATTCATATTT
CTCGGAAATTTTATTCGGTAAATTAACACCTACATGTGTATTTACACCTA
CAATGCTTCATAACACAAGGATGTGAAGCTAGAGTTCTTGTACAGCATTC
ATCAACAACCTCATAGGTCATATCAACTCAAGATAACAGAGAACAGAATT
CAGATAAAAACCAACGACCGTATTTGGGGTATTTGAATAGTCTTTTAACT
CATTCCATGATTCCCAAAATTATGAACGGATGCAAACTCCTGAATTTCGG
TTCATTTGTTGGTATTTTCCAAGCTAACATGGTATTGGCAGTGTCTTTCT
TCAACTCAATGCTTTGTCCAAGACTTACTGGATCCAGTATAAAGAAATTA
ACATGTGCAGGTATGGATCCACTTCCCTTCACATAATGTTTTAGTCCTTG
GTTCGAAACAGTGTAGACATTTCCATCTGCTGAACCGATGTTCATCCAAG
ATCCATCAAGTTTCTGAAGCTTAATAAAGGTAAATTGTTTATTCCCATAT
CGAACATCAACCTCCAGTAAATTTTCAACAAACTGATACCAATCCTGGTA
AGACTTATACAAAGCCAATTCTTGTTGTTTTCCGAGGAAATATCGTTCTG
CGCCCCATACAAGTCTGTACATGTTGGAGACATAGAACCTGCCAAAGGAA
GCCTTTGTCTTATCATCTACGTTTAAATGAGACATTTTTAAGTGTG

Coding sequence (CDS) from alignment at scaffold_94:329861..330606

>TCONS_00073578 ID=TCONS_00073578|Name=TCONS_00073578|organism=Clytia hemisphaerica|type=CDS|length=495bp|location=Sequence derived from alignment at scaffold_94:329861..330606 (Clytia hemisphaerica)
TCATTCCATGATTCCCAAAATTATGAACGGATGCAAACTCCTGAATTTCG
GTTCATTTGTTGGTATTTTCCAAGCTAACATGGTATTGGCAGTGTCTTTC
TTCAACTCAATGCTTTGTCCAAGACTTACTGGATCCAGTATAAAGAAATT
AACATGTGCAGGTATGGATCCACTTCCCTTCACATAATGTTTTAGTCCTT
GGTTCGAAACAGTGTAGACATTTCCATCTGCTGAACCGATGTTCATCCAA
GATCCATCAAGTTTCTGAAGCTTAATAAAGGTAAATTGTTTATTCCCATA
TCGAACATCAACCTCCAGTAAATTTTCAACAAACTGATACCAATCCTGGT
AAGACTTATACAAAGCCAATTCTTGTTGTTTTCCGAGGAAATATCGTTCT
GCGCCCCATACAAGTCTGTACATGTTGGAGACATAGAACCTGCCAAAGGA
AGCCTTTGTCTTATCATCTACGTTTAAATGAGACATTTTTAAGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045680XLOC_045680Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073578-proteinTCONS_00073578-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073578-exon-scaffold_94-1491911889:329861..330606TCONS_00073578-exon-scaffold_94-1491911889:329861..330606Clytia hemisphaericaexon
TCONS_00073578-exon-scaffold_94-1510915933:329861..330606TCONS_00073578-exon-scaffold_94-1510915933:329861..330606Clytia hemisphaericaexon
TCONS_00073578-exon-scaffold_94-1575043694:329861..330606TCONS_00073578-exon-scaffold_94-1575043694:329861..330606Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_94supercontigscaffold_94:329861..330606 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0660666	0	0	0	0.0890945	0	1.44396	1.74941	1.89288	1.31024	2.87817	2.068	4.43782	3.6961	3.97657	4.10643	2.23182	0.813347	2.87944	2.57218	0.511015	0.560824	0.606005	1.10189	4.68156	4.3681	0.271771	0.386722	0.953273	0.672393
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073578 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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