TCONS_00073590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073590
Unique NameTCONS_00073590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length764

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073590 ID=TCONS_00073590|Name=TCONS_00073590|organism=Clytia hemisphaerica|type=transcript|length=764bp
CTCCAtcgaaaattttcattccttGACTTCAAGAATCTCAAGACAGCTAT
TATAgtattgaattgaattgtatTGAATCTCttcaaattacaaaattttc
acAATCTTTGCTACTCATCCTATTggatttttatcgttttcacTGTACTT
TCGTCATCATCCTGACTATCAAGATCCTCAAACCAACATCAATAGTGCTC
ACTTCTCAGTCTTCAGACAACTTCACTGACAAATACACCCCATTGGAATT
ccgacctcctcaacagggggggtaCGGACTAtatctggaaaagcccaatg
tgaCAGCGGAGAAATACACAACCTCGAACACTAGTTCATCCGCTGCCCAG
ATGCATCAGAAGCAAAACAcgaaatttttgatgaaaaagaactTGAGGTG
GGCCTGGGACTTCTCACAAAGTGCCCTGAGAAGTCGATTGCCCTGGCGAA
GAGGACTCTCTTCGGGGTTCAGCAATGACCCAGTattcacacacacacac
acacacacacacacacacacaccaaCACCAAAATCCATGACtccatcaaa
aatgacctcTTCATGCAGGAAAGCTACAAGAAATGGAgggtcgaactcta
ttagctttaaagatAGTACGGATttgtagaaattttttgactttaaagaa
tatatatagTGAGTTGCCTTTTGAAGATAAAGGTTAGGGGTGACATTGGT
GATAAGACTTTAGATTATTTTCTTGTCAATAATCCCAGGTTGGGTAGGTT
TTATCTTCTCCCAA
Run BLAST on NCBI

transcript from alignment at scaffold_95:202236..206003+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073590 ID=TCONS_00073590|Name=TCONS_00073590|organism=Clytia hemisphaerica|type=transcript|length=3768bp|location=Sequence derived from alignment at scaffold_95:202236..206003+ (Clytia hemisphaerica)
CTCCAtcgaaaattttcattccttGACTTCAAGAATCTCAAGACAGCTAT
TATAgtattgaattgaattgtatTGAATCTCttcaaattacaaaattttc
acAATCTTTGCTACTCATCCTATTggatttttatcgttttcacTGTACTT
TCGTCATCATCCTGACTATCAAGATCCTCAAACCAACATCAATAGTGCTC
ACTTCTCAGTCTTCAGACAACTTCACTGACAAAGTAAGctctttttcctt
ttatttttcttctcacATCACTATTTCTACAGCTACACCTATGGTACTGC
CTCAACTCTGTCCCGGGTCAGACACTAGGTCTGTATACCTTCAGCTTTCC
AGGGTCTAACCATGACTGAAATGTGATCATAGGTTTATTGTGGAAATTTT
CTTTTGCTGGCTTCACCTCGATTGACTGATCTTATAAAATGTAGAGATTG
TATAAGTTTGTTTGACATGTACATGGGAGGGTCCACCTCACTATAAAGGG
TGGGATGGTACTGTTCCTGTGATTTAAGGACGGATGGAAGATAGGTTGCA
TCTTTTGGATCCAGGATGCACCCTATGTTAGGATTGACAGGTGGCCCCGG
CGGCCCAGATGGCGCTTACTCTTGGACCACACCTGACCATAGGTAGTCTC
AAGTAGATTATCTTCAATCCGACTCTAGACTATTTGTTCTACTTCCATAC
CTCCACAGTCTAAAGGCATTATACAGACTAAAGGCTCACTATTCAAAAAC
TAACACAACAGGAATAGGCCCGTCCTTCTTGGGGTTGGATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATCATGCTAAAACGAAT
TATTTATTTAATGATAGATCTCAATCTCATATCATCTTTGAGATTTCTCG
ACCACATGCTAAATTATGTTTGAGTTGTCCACAAGCTCCTATGCTCTCAA
GGTTCCAAATACTAAAACGATATATTTAATTATGAATAATCATGATTTgc
atagcaaaatatttttcatactcCATTACCATATTTCTCGCTAAAAATAT
GCAACATGACGAACATATGAATTGACAAGTTTGacacattttccttcaaa
aatacacgaTGGCATTCATAATATTATTGCCTTCTCAcatgaatttatta
tttttttaccaCTCCTTCCTCAATAACACAAAATAAGTATCAAAAATTAT
ACACATTTTCCTAAAAGAATACACAATCGAGAGTTTTCTTTTAATTGTCT
GCATTActacgtaatttttcaaaaatttaaaatagtggGTTTCAGCCGAA
CTAACATCTTACTAACCTATAACCACTTTTATCTATGACAACTACTTTAG
CTTTTCTCGATGTGCACGACCCGTAAACCTCATAAATTTCGGTTACATGC
AGGATAACCCCTTCATGATACCGGTTTTTATGatggtttttttttaaagt
agaagAAACGATATAAACGAAACAACTTACCAGCATTGATTCCATTTAAG
ACGTTTCAACATTCTTTGTATCCATTCGCCCATTTAAGGTAAACTTCGGT
AAACTTCTTTATGTCATTCAAAGCTGCCCGGAATCTAACCTCACCGAATT
CCGAGTTTAGGCTATTTTTGAGCACGCAGTATTAAAAGAACCCAGTAAAC
GTTAATGAAAAGCAGAATTTCAGTCGCCCCTGTGAATTTTGAACGTGAAA
TTTCCACTGGTTACTGTGTACCtctttgaaatggaaattcTTACCCTATA
TTCCGACACTGAAATTCAAGTAACCCCTATGGAATTATGGAATTCCTGTC
CTAAATTTCGGTTACCCCTATGGAATTCCTGCCCAGAATTTCAAGTCACC
CCCTATGGAATTCCTGCCCAGAATTTCAAGTCACCCCCTATGGAATTCCT
GCCCAGAATTTCAAGTCACCCCCTATGGAATTCCTGCCCAGAATTTCAAG
TCACCCCCTATGGAATTCCTGCCCAGAATTTCAAGTCACCCCCTATGGAA
TTCCTGCCCAGAATTTCAAGTTAACCCCCTATGGAATTCCAGAATTTCAA
GTCCACCCCCTATGGAGTTCCTGCCCAGATTTTCGGGTtacccctatgga
attccgaCCCAGAATTTCAAGTCACCCCTATGGAATTCCTGCCTGAGTTT
TGGTTACCCCTATGGAATTTCCAATCTTTTCATTTAGTACACCCCATTGG
AATTccgacctcctcaacagggggggtaCGGACTAtatctggaaaagccc
aatgtgaCAGCGGAGAAATACACAACCTCGAACACTAGTTCATCCGCTGC
CCAGATGCATCAGAAGCAAAACAcgaaatttttgatgaaaaagaactTGA
GGTGGGCCTGGGACTTCTCACAAAGTGCCCTGAGAAGTCGATTGCCCTGG
CGAAGAGGACTCTCTTCGGGGTTCAGCAATGACCCAGTattcacacacac
acacacacacacacacacacacacaccaaCACCAAAATCCATGACtccat
caaaaatgacctcTTCATGCAGGAAAGCTACAAGAAATGGAgggtcgaac
tctattagctttaaagatAGTACGGATttgtagaaattttttgactttaa
agaatatatatagTGAGTTGCCTTTTGAAGATAAAGGTTAGGGGTGACAT
TGGTGATAAGACTTTAGATTATTTTCTTGTCAATAATCCCAGGTTGGGTA
GGTTTTATCTTCTCCCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045691XLOC_045691Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073590-exon-scaffold_95-1491911889:202236..202468TCONS_00073590-exon-scaffold_95-1491911889:202236..202468Clytia hemisphaericaexon
TCONS_00073590-exon-scaffold_95-1510915933:202236..202468TCONS_00073590-exon-scaffold_95-1510915933:202236..202468Clytia hemisphaericaexon
TCONS_00073590-exon-scaffold_95-1575043694:202236..202468TCONS_00073590-exon-scaffold_95-1575043694:202236..202468Clytia hemisphaericaexon
TCONS_00073590-exon-scaffold_95-1491911889:205473..206003TCONS_00073590-exon-scaffold_95-1491911889:205473..206003Clytia hemisphaericaexon
TCONS_00073590-exon-scaffold_95-1510915933:205473..206003TCONS_00073590-exon-scaffold_95-1510915933:205473..206003Clytia hemisphaericaexon
TCONS_00073590-exon-scaffold_95-1575043694:205473..206003TCONS_00073590-exon-scaffold_95-1575043694:205473..206003Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_95supercontigscaffold_95:202236..206003 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.154275	0.430045	0.241497	0.0937651	0.204361	0.534254	0.807347	0.107735	0.371551	0.453344	0.298011	0.129586	0.0887213	0.0362981	0	0.0492519	0	0.0683011	0.142215	0.0761292	0.100014	0	0	1.44128	0.980042	0.293201	0.133332	0.312667	0.0755688
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top