TCONS_00073644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00073644
Unique NameTCONS_00073644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length995

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00073644 ID=TCONS_00073644|Name=TCONS_00073644|organism=Clytia hemisphaerica|type=transcript|length=995bp
ATTTTCGTATGATAAGGTCATTTTCGAAATCCCACTCTTGTTAGATTGTT
CTCAGGATTGGACcaaatttatgaaatatttttatacaaTTGTTATTATC
ATAAACGCGTAGCTGTAATAATCTAAAATGGAAACAAGAAGTTCAAAAAG
GAAAACAGTTAAACCTCCAAAACCAATCTCAGTGTCTGTCAAGAGGCCAA
AAAAAGGTTCAACTGCTTTGTCAGCCTATTTGAAAAGCTACAAAAATGGA
GATGAAATGCATATAACATTATTTCTTGCCGTACAAAAACTGGTCCAACC
AGAAAAGGTATTTTACCCAGGATGCCATCGTCATATCACTGCATCACTTA
CTTTCAAAGATGTAATTTATGTTGATTTTGATTCTAAAgtacaaaattgt
tttgaagatgATTCTACTTTACAATGGCTTAATGATAACAAGGAATATGA
CAATGACTGTAAACTGAAATTCATTTGTGGTGATTTTACACATAATTTAC
AAGGAGTTGTTGaggaaagttttgatttattgataTCTGCCTGTGCTGGT
ATTGTATCAACATCAACCTCCAAATATTTGAAGAAAGGAGGGTACTTTTT
AATCTCGGATGCCCATTATGATGCTAGAATGTTATCCCTTGATAAGGAAT
ATACACTCAAATATGTATGGGATTCAGGAAAGAAAGAACTTCTTAATGAC
CAGTATGATTTGGACCAGCACTTTAGGACTCTGGATGGTGAGAAGATTAC
AAGAGAAATGGTTGATGAAAGTATGAACAAACCTAAAGCGAGGCGGTTGT
TTAAGTTGAAAAAAGAAGCaatgttttatttgtttcagaaaaatcattaa
atttgtTTGGGTCTAAAAGTTGtatttgtaaaatttcataGTGTGCAGAA
gggtctgaacccccccattaatatttcatccccccctataaaggtatccc
ccctatttttaaaattttttgatcccgcaCCATTTACAGGGGTCC
Run BLAST on NCBI

protein sequence of TCONS_00073644-protein

>TCONS_00073644-protein ID=TCONS_00073644-protein|Name=TCONS_00073644-protein|organism=Clytia hemisphaerica|type=polypeptide|length=240bp
METRSSKRKTVKPPKPISVSVKRPKKGSTALSAYLKSYKNGDEMHITLFL
AVQKLVQPEKVFYPGCHRHITASLTFKDVIYVDFDSKVQNCFEDDSTLQW
LNDNKEYDNDCKLKFICGDFTHNLQGVVEESFDLLISACAGIVSTSTSKY
LKKGGYFLISDAHYDARMLSLDKEYTLKYVWDSGKKELLNDQYDLDQHFR
TLDGEKITREMVDESMNKPKARRLFKLKKEAMFYLFQKNH
Run BLAST on NCBI

transcript from alignment at scaffold_97:122708..123767+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00073644 ID=TCONS_00073644|Name=TCONS_00073644|organism=Clytia hemisphaerica|type=transcript|length=1060bp|location=Sequence derived from alignment at scaffold_97:122708..123767+ (Clytia hemisphaerica)
ATTTTCGTATGATAAGGTCATTTTCGAAATCCCACTCTTGTTAGATTGTT
CTCAGGATTGGACcaaatttatgaaatatttttatacaaTTGTTATTATC
ATAAACGCGTAGCTGTAATAATCTAAAATGGAAACAAGAAGTTCAAAAAG
GAAAACAGTTAAACCTCCAAAACCAATCTCAGTGTCTGTCAAGAGGCCAA
AAAAAGGTTCAACTGCTTTGTCAGCCTATTTGAAAAGCTACAAAAATGGA
GATGAAATGCATATAACATTATTTCTTGCCGTACAAAAACTGGTCCAACC
AGAAAAGGTATTTTACCCAGGATGCCATCGTCATATCACTGCATCACTTA
CTTTCAAAGATGTAATTTATGTTGATTTTGATTCTAAAgtacaaaattgt
tttgaagatgATTCTACTTTACAATGGCTTAATGATAACAAGGAATATGA
CAATGACTGTAAACTGAAATTCATTTGTGGTGATTTTACACATAATTTAC
AAGGAGTTGTGGaggaaagttttgatttattgataTCTGCCTGTGCTGGT
ATTGTATCAACATCAACCNGGTTGTTGaggaaagttttgatttattgata
TCTGCCTGTGCTGGTATTGTATCAACATCAACCTCCAAATATTTGAAGAA
AGGAGGGTACTTTTTAATCTCGGATGCCCATTATGATGCTAGAATGTTAT
CCCTTGATAAGGAATATACACTCAAATATGTATGGGATTCAGGAAAGAAA
GAACTTCTTAATGACCAGTATGATTTGGACCAGCACTTTAGGACTCTGGA
TGGTGAGAAGATTACAAGAGAAATGGTTGATGAAAGTATGAACAAACCTA
AAGCGAGGCGGTTGTTTAAGTTGAAAAAAGAAGCaatgttttatttgttt
cagaaaaatcattaaatttgtTTGGGTCTAAAAGTTGtatttgtaaaatt
tcataGTGTGCAGAAgggtctgaacccccccattaatatttcatcccccc
ctataaaggtatcccccctatttttaaaattttttgatcccgcaCCATTT
ACAGGGGTCC

Coding sequence (CDS) from alignment at scaffold_97:122708..123767+

>TCONS_00073644 ID=TCONS_00073644|Name=TCONS_00073644|organism=Clytia hemisphaerica|type=CDS|length=1446bp|location=Sequence derived from alignment at scaffold_97:122708..123767+ (Clytia hemisphaerica)
ATGGAAACAAGAAGTTCAAAAAGGAAAACAGTTAAACCTCCAAAACCAAT
CTCAGTGTCTGTCAAGAGGCCAAAAAAAGGTTCAACTGCTTTGTCAGCCT
ATTTGAAAAGCTACAAAAATGGAGATGAAATGCATATAACATTATTTCTT
GCCGTACAAAAACTGGTCCAACCAGAAAAGGTATTTTACCCAGGATGCCA
TCGTCATATCACTGCATCACTTACTTTCAAAGATGTAATTTATGTTGATT
TTGATTCTAAAgtacaaaattgttttgaagatgATTCTACTTTACAATGG
CTTAATGATAACAAGGAATATGACAATGACTGTAAACTGAAATTCATTTG
TGGTGATTTTACACATAATTTACAAGGAGTTGTTGaggaaagttttgatt
tattgataTCTGCCTGTGCTGGTATTGTATCAACATCAACCTCCAAATAT
TTGAAGAAAGGAGGGTACTTTTTAATCTCGGATGCCCATTATGATGCTAG
AATGTTATCCCTTGATAAGGAATATACACTCAAATATGTATGGGATTCAG
GAAAGAAAGAACTTCTTAATGACCAGTATGATTTGGACCAGCACTTTAGG
ACTCTGGATGGTGAGAAGATTACAAGAGAAATGGTTGATGAAAGTATGAA
CAAACCTAAAGCGAGGCGGTTGTTTAAGTTGAAAAAAGAAGCaatgtttt
atttgtttcagaaaaatcattaaATGGAAACAAGAAGTTCAAAAAGGAAA
ACAGTTAAACCTCCAAAACCAATCTCAGTGTCTGTCAAGAGGCCAAAAAA
AGGTTCAACTGCTTTGTCAGCCTATTTGAAAAGCTACAAAAATGGAGATG
AAATGCATATAACATTATTTCTTGCCGTACAAAAACTGGTCCAACCAGAA
AAGGTATTTTACCCAGGATGCCATCGTCATATCACTGCATCACTTACTTT
CAAAGATGTAATTTATGTTGATTTTGATTCTAAAgtacaaaattgttttg
aagatgATTCTACTTTACAATGGCTTAATGATAACAAGGAATATGACAAT
GACTGTAAACTGAAATTCATTTGTGGTGATTTTACACATAATTTACAAGG
AGTTGTTGaggaaagttttgatttattgataTCTGCCTGTGCTGGTATTG
TATCAACATCAACCTCCAAATATTTGAAGAAAGGAGGGTACTTTTTAATC
TCGGATGCCCATTATGATGCTAGAATGTTATCCCTTGATAAGGAATATAC
ACTCAAATATGTATGGGATTCAGGAAAGAAAGAACTTCTTAATGACCAGT
ATGATTTGGACCAGCACTTTAGGACTCTGGATGGTGAGAAGATTACAAGA
GAAATGGTTGATGAAAGTATGAACAAACCTAAAGCGAGGCGGTTGTTTAA
GTTGAAAAAAGAAGCaatgttttatttgtttcagaaaaatcattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045733XLOC_045733Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073644-proteinTCONS_00073644-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00073644-exon-scaffold_97-1491911889:122708..123212TCONS_00073644-exon-scaffold_97-1491911889:122708..123212Clytia hemisphaericaexon
TCONS_00073644-exon-scaffold_97-1510915933:122708..123212TCONS_00073644-exon-scaffold_97-1510915933:122708..123212Clytia hemisphaericaexon
TCONS_00073644-exon-scaffold_97-1575043694:122708..123212TCONS_00073644-exon-scaffold_97-1575043694:122708..123212Clytia hemisphaericaexon
TCONS_00073644-exon-scaffold_97-1491911889:123278..123767TCONS_00073644-exon-scaffold_97-1491911889:123278..123767Clytia hemisphaericaexon
TCONS_00073644-exon-scaffold_97-1510915933:123278..123767TCONS_00073644-exon-scaffold_97-1510915933:123278..123767Clytia hemisphaericaexon
TCONS_00073644-exon-scaffold_97-1575043694:123278..123767TCONS_00073644-exon-scaffold_97-1575043694:123278..123767Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_97supercontigscaffold_97:122708..123767 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
9.97529	10.7839	3.79216	2.80468	7.65653	10.4029	3.65594	4.03314	3.46129	2.10977	1.48622	1.20638	3.04216	2.75894	5.74119	6.03947	5.15002	5.24427	2.73496	3.16319	3.9277	2.80983	16.2505	13.4567	1.63239	2.05442	2.04243	1.35408	7.60672	9.34079
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00073644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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