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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00073665 ID=TCONS_00073665|Name=TCONS_00073665|organism=Clytia hemisphaerica|type=transcript|length=589bp
GTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACA
GCTTATTACTGCTGAAGATGATATCCATGACATCATTGAAAGATCCTcga
aatctgattggctaatcaACCCTAAACATGACGTCATTAGTGAAAATACA
GTATCTGATTGGTCAGATTCTACCAATGATGATGAAGAAATTGTGAATGG
TCAATGGTGGTCCTCCGGCAGACTTGTTCGCAAAGGCAAACGTTCAACAC
TGGAACGAAAAGATGTACAGCATGCCCAAAAGGACGAAAAGGAagatttt
gattggtcgaatgATGAGGAATACGTTCAAAGTCACAGCATCGAGAAACG
AAATTATTGGAGAAGAAGACGACGGAGGAGGTGGAGTAGATTTGCCAGAG
CTGGTGATGAGCCTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCA
ACGTTGGAAACAGTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAA
CATGGGTGAaagaaaaagtgacaaaattacCGGATCCGAAAATTCAACCT
TACAGAAAGAAGCCGCCTCTATAGGAGATGAAATTTGAG Run BLAST on NCBI protein sequence of TCONS_00073665-protein >TCONS_00073665-protein ID=TCONS_00073665-protein|Name=TCONS_00073665-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
VGMLRFHCLPIVLFILQLITAEDDIHDIIERSSKSDWLINPKHDVISENT
VSDWSDSTNDDEEIVNGQWWSSGRLVRKGKRSTLERKDVQHAQKDEKEDF
DWSNDEEYVQSHSIEKRNYWRRRRRRRWSRFARAGDEPLMESHDNQQNNS
TLETVEVEAGEMTGPENMGERKSDKITGSENSTLQKEAASIGDEI Run BLAST on NCBI transcript from alignment at scaffold_97:490062..496944+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00073665 ID=TCONS_00073665|Name=TCONS_00073665|organism=Clytia hemisphaerica|type=transcript|length=6883bp|location=Sequence derived from alignment at scaffold_97:490062..496944+ (Clytia hemisphaerica)
GTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACA
GCTTATTACTGCTGAAGATGATATCCATGACATCATTGAAAGATCCTcga
aatctgattggctaatcaACCCTAAACATGACGTCATTAGTGAAAATACA
GTATCTGATTGGTCAGATTCTACCAATGATGATGAAGAAATTGTGAATGG
TCAATGGTGGTCCTCCGGCAGACTTGGTATTATTATtatctttcactttt
tttcattttttatgtgaATTGAGAAGAAAGTACCTTTTTATGTAACTTTG
ACATCTCTCCTTGGCaacttgagatttttttttatgacCTTGTACCTGGA
GCCACTTGTACCAATCTTTTTTTTAGCGGCcgtagctcagtggtagagct
cccctaccttcaggtggatagctatcgaaaagggggccttcgggtcgcct
ccgactgtggtCTTACTTACATTGAAGAAAATTATACTTCAtattgcctg
aagattgtcaccAAAGTGACATGAAACTGTCAGTACAATCAgggtcgaaa
tatattgggaattttggttaattcctcgtttttagcaatttaaagttcgg
gcgaaaaagtcgcttttgggcaaattgataaatttattcgaatatttcga
tTCGGATgaggtttatagacttccaggctacattctgagccctattggac
cattcttgcaACTTTTAGTTCTtcagatcctaagctcctaagtcttaagt
ctacaatcatccactaaatatttgagacaaaggggatttcccggtgtaat
tttgaacaccaaaattgatttttaagcgccttaaactacagttggaaagt
agagttttaactctgagttttaacatgagacttaaagacttaggacctta
ggatctcaggatttaaaagctcaaatttgctcgaatgaggcttggaatat
agcctagaagccaccaaacccctataaaatcgaaatattcaatggaaaaa
agtggaagtgctaaaatagcaattctcgcccgaactttaaattctgaaaa
acgttgaaatacactaaaatctcaatatatttcgagggagattgtagcat
taaaactctacccgtccaacctaatttagagcgctaccaaatcgtttgtg
gttataagatttcgtgggaatttctcttttttctcaaatatgactttgat
tgtagcAATATAAAAGTGACTTTTCTTCATGACTGACATCGCACTACTTA
TATTTCGGGCACtgtaaaaactgaaaaattactTACTTCTATCTCTAAAT
CTGTCTAGTTCGCAAAGGCAAACGTTCAACACTGGAACGAAAAGATGTAC
AGCATGCCCAAAAGGACGAAAAGGAagattttgattggtcgaatgATGAG
GAATACGTTCAAAGTCACAGCATCGAGAAACGAAATTATTGGAGAAGAAG
ACGACGGAGGAGGTGGAGTAGATTTGCCAGAGCTGGTGATGGTGAGAATT
Tttcacacaacgttgtttcaacgttcatctaacgttatatggacgttgtg
aacgtaagataaacgtcgaaaaaacgttgtgtacCGGCTGGGTTTATGCT
ATAATTGAAGAACATTTCTTGGAAAGGTTGAGCTCTTCGTTCgtgttttc
atgaaaaaaaatttatcatgaAAATAAATCAGTCGTACTATATCAACATG
AAatggaaactaattttctttaatttttgtgatcaatttttgaatttttt
tgtgattctttcgatttttggtgattttgttgGGATTATTGGTGATTATT
TTGAAAAGCGTACGTGATTTTTCCGAGTAATTTGACCTCTCGACGGAAAT
AAGCCAACGTGAAAATCTTGAGCTTGTACTTTTGGCAGATTTgaaatcaa
attgaaattaaatgacaaattactttaggcgtacaaactttcgcgaatta
ccctgtcaagaattttcaaagacattacAACATTAACTTTCGCGGAAAAG
GCCAAAATGCgggaaaattcgcgaaattttctactcgcgaaagtttttac
GCCTAAAGTCAATCCCGAAATTTCAGTTCTCCACGGGAATAAGGCGggtt
cgtggaggtcaaaattcttgcaacgttacaaataattttcagaagctcat
tttgggctcaaacaaagcgtatgactaagtagaataggattcagtctagg
cagatgttttttcactttgaaattttgcgtaattNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNaaaaaatttatgaaatttgatgacgtcatcacttttaaggcaaa
aagctaaaatcctcaaaaaatgctgacatcatcaagattttgaaaatttt
tgaaaatcttttgaaaatttgcatctgcctagactgaatcctaTTCTACT
TAGTCATACGCTTTGTTTGAGCCCgaaatgagcttctgaaaatgatttgt
aacgttgcaagcattttgaccccgccttaatcccctTGAGTTTGCGTAAA
TCTATccaattaattaaaaaataatctaatAATTTAGAATATTCAAATTG
TTACACCTGgtgttaatagattagtatcgCGAAAATTAATGGCCAAATAC
AAATTTAACTGAAATTCTTTATGTTCTTATGTGAGTTTATTTTAGAAAAC
TGGTCTCAGCTGGCACAAAAcgctgtttcaacgttaatctaacgttatat
atatggacgttgtgaatgttgGATAAACGTTAAATCAATGTGGTGAGCCA
GCTGGCgttcttatttttactttgAGTTGTTGATATCTCTTCTTCTTTTC
TCCAGAGCCTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCAACGT
TGGAAACAGTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAACATG
GGTGAaagaaaaagtgacaaaattacCGGATCCGAAAATTCAACCTTACA
GAAAGAAGCCGCCTCTATAGGTTACAACCAACCTACCGAAAATACTGATA
CAAGAAAACACCAGTGGTATGGTGGTCATGAAGGGTGGAATGGTGGTACT
TTGGGGCGGTGGCGTGAAAGCGGTGAGTTTTTtctacattaaaggaagaa
attttggcgggaatttattttggcggaCTATGAGTTTCAAGGTTCGAAAT
CAgtgtgaaaatgttaaaaaaatacgCCCATTTAGATAAATAGTGAAAAA
TCGAAAGAAATATGAGAAAACTTAAGTTTggcagggatttaatttggcgg
atggtggaaaagaaaaatttggcgggaagaaaatttggcggattttgccg
aaatcttcctttaatgtacttATTCCGACTTTGAGACCCTTTCATTGCAT
GATGAATCATGTTatctgttgaaaaaaaattacgagacAATAAGTTCCTT
TCAGTATCACTGGgtgaaataagagatttccaatcctgggaatatcttga
aaatatgatatttccatatacttttgtaaatatggaaatatgactttttt
atatttccaaagttgtggaaataccatatttcatgatatttctaaatctg
aaatatcatattttcaaaatatttccagcttttggaaatatgatatttcc
aaaaattggaaatctattgatgcaaattacccgacttcacggtaagGAAC
TTCCAAATTattacaaaatatattttgcaaAACGCCGACAATTGTTTTTA
ATAATTCATGTATAGCTGAACAGAAGCTATTACCAAGAGGATTCCGAAAA
AAAGTTGtgccaaaaatttaaaataatccTGACTCAAGACATCAGCAAAA
GATTGATATTTAAGTTAAAAAGTccgtcgaaaaaaaaacacgtcaaaata
ATGGTTTCAATAGCGTCACTAAAGAAAAACACCGATAATTTTATATCCAG
TTCAGAAATCGAAGccaaattttgactgggatGGTAATTAATGATTCTAa
gaaattcaattaaaaaaatttcaaaaaaaattgctgAAATCCCAGCATTT
TATgaggtttttaaatttttgtcgaCATAATAACGACGtggtcaaaattt
gataaaaatgatttgataaaaatgatatgttcgagaaagtcgtttttgag
ctaattgataaatttattcgactatttcaattcgggaggggtttatttac
ttccaggctatattctgagcctaaGTGGaacaattttgaacttttagatc
ctgagatcctaaggtcttaagtctagcgttaaaactcaaagtaaaaatct
acccttccaacctaatttagagcgcttccaaattgtttgtggttataaga
tttcgtgggaatttcccttttttctcaaatatcatGACTTTGATTGTATA
CATGACCAACAAAAAACGATGGGAACCGGTCGGTGTCACGCctaaggggc
cgtccatatagtacgtacgcaaagattttccaaaattttgataccccctc
ccccccttgtacgcagagaacaatagaaatgacgtcaCTCAAACAATAGA
TGTatgcttttgctaaacccctctccccccttcactgcgtacgtactata
tggatggcccctaaTAAGATAGTTTTTGAGCATTCCTTAAACTAACCTTA
ACTAACAGTCCACAATTTAGTATTGTTGAAAATTGCCTCCTCATGTACCG
TAGACAAGAGACAGATTTAGAATTACGGGAAATTCGAATCAAGTGCTGTC
CTTGctttctaaaattaaaaccaaatTTCAGAGCTTGCGTTTTCTAAGAA
AATGTGACCAGTGAAAGAataacagaatttgattggctatgttttcaccc
GTCATTAGGAtatgagaaattcaaactctcaacccaaaccatgctattca
tttcgccatcagtatataagaGAAGAAAtaatagcatggatctccaggct
atttATACAATATAGGTCGACTAATGTTTTGTATCGGGTACTATGACTCA
TCAGCGACGGAGAGTCTCCGTATTCTTATAAGGAGTATGGCTAAAAGGAA
CACTCTCCGTCTGAATTTTCTAATCTTCCTTAGATTCGCCATTACTTAGT
ATTGGACTTTCTGGGAATGATTCCTTTTATAATATATTGGTATTCCTcca
tatcattttcattttcatccatCGACTTTTTGAACCAGGTACGACTTTTT
GAACCCGGTAATAGAAAGACTGCAGTGGTATGAATAAAAGATAAACACTC
TCTGTCGTGAATTTTGAATGCTCCTTAGATTCAGATCTGCCACTGCTCAG
TAACGGCCTTTCTGCGTGTTATTAATTCAATGCGAATGCCAAGATCCAAT
GTTTGTGATAATCATAGaattttcttaatctttattCTTGAAAGCACATT
TTTATGATGAAAAGCTTATAACCCATTGTATCGATATTTCTAGAAGAAAT
TCAAAAGGCTGCAGATAACGAAAATGTAGATATTAACCTTGAAAGCGATC
AAACACACGGAACCGGAAACGAAGAAATGAGCTTCGAAACACACGAtatc
gaaaatgaagaaataagtGATAAAACACACGGTACCGAAAAACGAGGTGG
GAATTGTTGGAGGAGACGATGGTGTTGGAGAAAGATGGCAAGAATAATGA
TTATAAATGACGGTAAATTAACTCTTTCTAATCCTCTTACGCGATCATCA
ATTCACAATTTGTGATAtaaatgatgtaatgttttatacggaagcaacCA
ATAAAGACTGGTCTAGTTAAATAAGCCTATATTCACAAGTctaggacaca
cggctaatGGCATTTTATGTGCAGCCCGACTTTTAACCCTCGGACCTTTA
GCGGgactaaaaaaatttttgcgatttttatgaccgttattgggactaat
tagaccaaattttgatctttcaaggagcAAAAAGTTAATATTATATAaag
ttaaaatattcttatttttccgacccttagttggactaaaatttaatttt
ctggttaaataccccccccccggctgtaacccttttcaactttcaacttt
actttttatACTGCTTATCAaccaaaaatatctaaaaaacaaTGGACGAA
Tatccaaaaaaagttgaagccttttgatgttcttaactttttgagtttta
agcctaaaaattttcttaacatgttattattttcacgattttatgAGTgt
gttttcaaggtttttgtccattttcttaagaaatcgggtgttttagagcc
tgcaaacccttaaaatgttcttaacttgtttttaatattttggccattga
agccttacgttcttgtatagtttgttctgcCTTTACAAGTTGTTTGGTAA
TTTATCATGTCAAGAATATACTTATCAaccaaaaatatctaaaaaactaT
GGACGAATatccaaaaaaattgaagtctttggatgttcttaactttttga
gttttaagccttaaaatgttcttaacatgctcttattttaACCAGTTTAT
gaatatctttgtttattttcatcttaagaaatcaggtgttttagagcaTG
CCaacccttaaaatgttcttaacttgttcttaatattttggccatcgaag
cctatgttcttgtatagtttgttctggtataaaaaacgtgtacaagtCTA
ACTTCCTGTTATTTTTAGGAGATGAAATTTGAG Coding sequence (CDS) from alignment at scaffold_97:490062..496944+ >TCONS_00073665 ID=TCONS_00073665|Name=TCONS_00073665|organism=Clytia hemisphaerica|type=CDS|length=2352bp|location=Sequence derived from alignment at scaffold_97:490062..496944+ (Clytia hemisphaerica)
GTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACA
GCTTATTACTGCTGAAGATGATATCCATGACATCATTGAAAGATCCTcga
aatctgattggctaatcaACCCTAAACATGACGTCATTAGTGAAAATACA
GTATCTGATTGGTCAGATTCTACCAATGATGATGAAGAAATTGTGAATGG
TCAATGGTGGTCCTCCGGCAGACTTGTTCGCAAAGGCAAACGTTCAACAC
TGGAACGAAAAGATGTACAGCATGCCCAAAAGGACGAAAAGGAagatttt
gattggtcgaatgATGAGGAATACGTTCAAAGTCACAGCATCGAGAAACG
AAATTATTGGAGAAGAAGACGACGGAGGAGGTGGAGTAGATTTGCCAGAG
CTGGTGATGAGCCTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCA
ACGTTGGAAACAGTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAA
CATGGGTGAaagaaaaagtgacaaaattacCGGATCCGAAAATTCAACCT
TACAGAAAGAAGCCGCCTCTATAGGAGATGAAATTTGAGTCGGAATGTTG
CGATTTCATTGTTTGCCTATCGTTTTATTCATCTTACAGCTTATTACTGC
TGAAGATGATATCCATGACATCATTGAAAGATCCTcgaaatctgattggc
taatcaACCCTAAACATGACGTCATTAGTGAAAATACAGTATCTGATTGG
TCAGATTCTACCAATGATGATGAAGAAATTGTGAATGGTCAATGGTGGTC
CTCCGGCAGACTTGTTCGCAAAGGCAAACGTTCAACACTGGAACGAAAAG
ATGTACAGCATGCCCAAAAGGACGAAAAGGAagattttgattggtcgaat
gATGAGGAATACGTTCAAAGTCACAGCATCGAGAAACGAAATTATTGGAG
AAGAAGACGACGGAGGAGGTGGAGTAGATTTGCCAGAGCTGGTGATGAGC
CTCTAATGGAAAGCCATGACAACCAGCAAAACAATTCAACGTTGGAAACA
GTGGAAGTAGAAGCAGGCGAAATGACCGGTCCCGAGAACATGGGTGAaag
aaaaagtgacaaaattacCGGATCCGAAAATTCAACCTTACAGAAAGAAG
CCGCCTCTATAGGAGATGAAATTTGAGTCGGAATGTTGCGATTTCATTGT
TTGCCTATCGTTTTATTCATCTTACAGCTTATTACTGCTGAAGATGATAT
CCATGACATCATTGAAAGATCCTcgaaatctgattggctaatcaACCCTA
AACATGACGTCATTAGTGAAAATACAGTATCTGATTGGTCAGATTCTACC
AATGATGATGAAGAAATTGTGAATGGTCAATGGTGGTCCTCCGGCAGACT
TGTTCGCAAAGGCAAACGTTCAACACTGGAACGAAAAGATGTACAGCATG
CCCAAAAGGACGAAAAGGAagattttgattggtcgaatgATGAGGAATAC
GTTCAAAGTCACAGCATCGAGAAACGAAATTATTGGAGAAGAAGACGACG
GAGGAGGTGGAGTAGATTTGCCAGAGCTGGTGATGAGCCTCTAATGGAAA
GCCATGACAACCAGCAAAACAATTCAACGTTGGAAACAGTGGAAGTAGAA
GCAGGCGAAATGACCGGTCCCGAGAACATGGGTGAaagaaaaagtgacaa
aattacCGGATCCGAAAATTCAACCTTACAGAAAGAAGCCGCCTCTATAG
GAGATGAAATTTGAGTCGGAATGTTGCGATTTCATTGTTTGCCTATCGTT
TTATTCATCTTACAGCTTATTACTGCTGAAGATGATATCCATGACATCAT
TGAAAGATCCTcgaaatctgattggctaatcaACCCTAAACATGACGTCA
TTAGTGAAAATACAGTATCTGATTGGTCAGATTCTACCAATGATGATGAA
GAAATTGTGAATGGTCAATGGTGGTCCTCCGGCAGACTTGTTCGCAAAGG
CAAACGTTCAACACTGGAACGAAAAGATGTACAGCATGCCCAAAAGGACG
AAAAGGAagattttgattggtcgaatgATGAGGAATACGTTCAAAGTCAC
AGCATCGAGAAACGAAATTATTGGAGAAGAAGACGACGGAGGAGGTGGAG
TAGATTTGCCAGAGCTGGTGATGAGCCTCTAATGGAAAGCCATGACAACC
AGCAAAACAATTCAACGTTGGAAACAGTGGAAGTAGAAGCAGGCGAAATG
ACCGGTCCCGAGAACATGGGTGAaagaaaaagtgacaaaattacCGGATC
CGAAAATTCAACCTTACAGAAAGAAGCCGCCTCTATAGGAGATGAAATTT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00073665-exon-scaffold_97-1491911889:490062..490287 | TCONS_00073665-exon-scaffold_97-1491911889:490062..490287 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1510915933:490062..490287 | TCONS_00073665-exon-scaffold_97-1510915933:490062..490287 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1575043694:490062..490287 | TCONS_00073665-exon-scaffold_97-1575043694:490062..490287 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1491911889:491370..491552 | TCONS_00073665-exon-scaffold_97-1491911889:491370..491552 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1510915933:491370..491552 | TCONS_00073665-exon-scaffold_97-1510915933:491370..491552 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1575043694:491370..491552 | TCONS_00073665-exon-scaffold_97-1575043694:491370..491552 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1491911889:493117..493281 | TCONS_00073665-exon-scaffold_97-1491911889:493117..493281 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1510915933:493117..493281 | TCONS_00073665-exon-scaffold_97-1510915933:493117..493281 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1575043694:493117..493281 | TCONS_00073665-exon-scaffold_97-1575043694:493117..493281 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1491911889:496930..496944 | TCONS_00073665-exon-scaffold_97-1491911889:496930..496944 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1510915933:496930..496944 | TCONS_00073665-exon-scaffold_97-1510915933:496930..496944 | Clytia hemisphaerica | exon |
| TCONS_00073665-exon-scaffold_97-1575043694:496930..496944 | TCONS_00073665-exon-scaffold_97-1575043694:496930..496944 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_97 | supercontig | scaffold_97:490062..496944 + |
Blast
The following BLAST results are available for this feature:
|
