TCONS_00001127 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001127
Unique NameTCONS_00001127
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2662

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001127 ID=TCONS_00001127|Name=TCONS_00001127|organism=Clytia hemisphaerica|type=transcript|length=2662bp
GACTTCGTATTTATCTATTTCGGCTAAAGTTTCTATCTATCGACTTTATG
TCCTAATTAAACAGTTTTCTATTCAGATATTTGAAATGCCAAAACattgt
gaaaaatgaaaaataaaagatgaaTTTTTAATGAAAGAAGGGAAAAAGAT
GAAGATAGTGTTAGATTGTAACTGAAAACAAGATGGTGGAAAGAGGAGGT
GTCAGGCGACCGATTACGTCATCATACCAAGAAGAAAGTGCAAGATTTGC
TTCTgcagaaaatgaagatgaaaatgagatGGGTGAAGTTATCAAGCAGA
AATTGATGAAGTTCACCAGGCCACGAAAGTTACGTTCAAAAGACATTTTA
CTCGCTATCCAACCCAATGGAGAAATCACCTCCACCAAAGACCCAGATAA
TCCTTATGCACTTCTACAAGTGATATCGATCAGTGCTAACATGATTGCCA
TGTGGGGGAAAGAAGCACAATTATATATGGCCGTCAACGAACTTGGTCAA
GTCTACGCTACCGAGACAGAAGGTCGTGATTGTGTCTTTGTGGAGTGTTT
TACACCAGAGTTCTACAACACTTATGAAAGTTATCATTCAATAAACCATC
CAACAGCTAAATATTACCTCACTTTACCCACGCCTGGTGAATTGGTGCAA
ATGACACACGACATCACTCAAACATCAACTTTTTATTGGGAAGTACCACA
ATTACATTATTCGAACATTCTACCATCTTCGTTGCCAATGACAACGAAAA
ATTCAATTAATAACAcaagaaaaatggtcaaaaatgttGTTAGGTGATAT
TTGTTTCAAGAGTTTTATAAACGAGAGAAATCCAGGCAATTTCCTTATTA
ATTGGAGGGAAGAGAAATCGAATGCAAATTTCTGAGGTTAGCCTACCAGA
AAGACTGAGAAAGAGACTCTCAAACGGTCACTCCAAACACCAACATGACT
TTTAGATATCatgaaaatttccaataaaCAGTTTTTGACAAACCTTGCAT
TTTAACACACGCACGCATATATAcaatttgtaaaaaaagtaACTAAACAA
TAAAAAGATGTGTTCAATGCTAAAATCAATATACAAATAAATTCACAAGT
TTTTCAAAACCCTCTCTTAATTAAGGATGGTATCCACCCTATGCGGATGA
AGTGTTGCCTTGTTTTAAACGGAAATTTTCCACCTCAGATTTTTTAGTAT
CCTTTCGTTGTCTAACGATAGTTTTGCGACCTTGATCACTCATTTCCGTA
TCTGCACGTATCCGATATCCACGCCGACAGATCTCTCGGATCTCACGTTT
GACAGTTTTGTTCATGAAGCAATAAACCCATCCATTGATGGAGCAATTGA
TGGTGTAAGCTAACGTGACGAAATAACCCAACCAGTGTGACGGGTTCTCA
ATGTAACCGATCGTGATGAAGGGTACATCAAACACCACCAACCAAATAGT
GGTGATGAAGAATTGGATAAACACTTTACGTTCACGTGCGCTCTTACGCT
GCTCGTGTACGGCGTCTAAAGACGTGTTACGTTGAGCTTCTCGAAGTGCT
CTGAAAcgtaaacaaaaagaatatgtttGAACTACTTCTGGAGGAAAAAA
CACGGATTAAATGGAATTCTGGAGTTCCATATCAGACTGATTTGTCAAGG
GAACTTTTCGATCCCTTGCAACCATAAACGAACAATAACCTCGGAATATG
TTTTGGTGAAGAGAAAGTGTTATTATTTGACTGGCTGATGGTATTTAATC
AGATGAAAGAAACTATTCGTAGTTTAAAAcgtaacataattttttttacc
tgaaaaCGAGGCCGTTGAGGAAGTAAGTGATTGATGTGATGATGACTACC
ATGGTTATTTCACCCAAAGCTAATGTTTTGGCGCCATCGAAGTCTATACT
CCAGCCCCATGACATCAAGGTGTAATCGAAATGTAGAGAACAGCATGGGA
AGAAGGAGGGGATGGAATAAGCAATACCAAACACCCAACATCCTATACAG
TACATGTTCGTCAAACGTTTCTTGTAAAACCTGCTGTACAAATCTTTGTT
ACAGATGCACAAATATCGATCACCAGCTAGAAAGATGAGTAGTGGTAGTC
CGCTGAACCATCCAATGTTCAATACGCCACCCAACGCGAGACTGTTGCTT
AGACTTGTTCGGTAAAATAGACAAGGGGAAGCGTATCCAATCATTAGGAA
GAGACACATACAATCTGCGATACCGAGACATCCAGCGATCGTAAAATAAG
TCTTGTCTTTAAACTTAGGACGTGTGAACACGACGAACATGAATAGAACG
TACACCATGAGACCGAACAACGAAACGATGAGTAGAAAGGCGCCACATAT
TTGACTGGTTTCTAACGAGAAGGCCAGATCTACCGCCGTTGAGTTGTGAT
CCGCCATTGTTTCTCTGTTTCCTCGTCGAATAAACACCTAAAAGTTAGAC
AGAACAGAAAAATGACTTTTAgactttttatgattttattgaaGTTTAAT
CGATTGTAAAGTTTGTTTTAGAGTAGTAATTGTCACTTTTGATGTCTGAT
ATATCCTTTTCAATTATACACTTTTAACCACTTCACTACATGACTTAGTA
GATTTTAATATAAAACAAATTATTGTCATATCAACTCACTCAGAAATGAT
TTTGCGGAAAGT
Run BLAST on NCBI

transcript from alignment at sc0000007:479133..483672-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001127 ID=TCONS_00001127|Name=TCONS_00001127|organism=Clytia hemisphaerica|type=transcript|length=4540bp|location=Sequence derived from alignment at sc0000007:479133..483672- (Clytia hemisphaerica)
GACTTCGTATTTATCTATTTCGGCTAAAGTTTCTATCTATCGACTTTATG
TCCTAATTAAACAGTTTTCTATTCAGATATTTGAAATGCCAAAACATTGT
GAAAAATGAAAAATAAAAGATGAATTTTTAATGAAAGAAGGGAAAAAGAT
GAAGGTTCGCTGAAGAAGGTTTTCAATGTGCAACAGGCTGTTTTGTTTGT
CGTTCACTCGCTCCTACATTTTCCTTCCATTTCTAACATTTGAGAAATAT
TTTTTTATATGGTGTTTTATGATGTGTAGATCTCCAGTTAACCAAAAAAA
CATCTATGATTTTAATATTTCTTTACTATACTATATATCTAGTTGGTTTT
AGTGTTTTCTCTGTTTTATGAATAAAGAAACAAAATTTGTATCAGGATTC
ACTTGTTGTATTCATTCCATTCCAGATAGTGTTAGATTGTAACTGAAAAC
AAGATGGTGGAAAGAGGAGGTGTCAGGCGACCGATTACGTCATCATACCA
AGAAGAAAGTGCAAGATTTGCTTCTGCAGAAAATGAAGATGAAAATGAGA
TGGGTGAAGTTGTAAGTGCAAGAAGATTCTTGCTTTTCACTTGAAAGTGG
AGTGAAATTGTTTCACTAGATCTCCTTTTGAAGTGAAGAAAATTCCTCTT
CACCTAAAAATCGACTTTTAAGAAGGTGACAAAACGAAGATGTTTTGGGA
AGTATTATTTCATTCTCAGGGAGGATTTCCTTCTGCTTTTTAATTTCAAT
TTTTGCTAGGAAAAAGTTATTCCTATTTATATCACCTATTTTTGATAACC
TTTTTCTGTTTTTTAGTTTCTCAAGACACTTTAGATTCAGATTCTTTGAA
TTGATGTAGCTTTATGAATTTTAGATCGATAATCTGGATAATCTGGATAA
TTTCCCCCCGTCAAAAGTTTTCCACACTTATCATTTGCAGATAAAAAAAA
GAAGAAATTTTAGAATTAAAGAAAACATGTTTATTTTGTGGGGACCATCT
ATTCCCTTCTTCGAATTTCATTTTCAAATAAACTTCTATTTTTGTTGGTT
CAACTGAATCAAATTCCATCCTTCCCCTTCTTTTTGAACGTTCTTTTCAT
TTTTGAAAATCTCCCCACATGGTGTTTATTGACAAGGTACTTCGTAAAAA
GTGTAATCTCTTATTTTCCAAGCCTGACTTACTGCTCGGATGGTTGTCCA
GTCTTTAAGTATGAGCTCAACAATTAGATTGACTTTTTGGAAGTTTGAAA
ATGGTAATCTATGCTATCAGTTGTTATTCTCTTAATTTTCTTGGAAATAA
TACATCCTTTCAATCTTTTTTGCACCGCAAGGCATTGACATTAAAAACGC
TTGATATTCTTCGTTGATATTCTTTTCCCTTTCCACTCTTCAGATCAAGC
AGAAATTGATGAAGTTCACCAGGCCACGAAAGTTACGTTCAAAAGACATT
TTACTCGCTATCCAACCCAATGGAGAAATCACCTCCACCAAAGACCCAGA
TAATCCTTATGGTAGGTAATATGTACCATCGTTGGTTTGATTAAGAAGTT
GGACTTTTCAACCCCTGTCTCGGTAGATATTCAAACCAGCTTCATTTTGG
GACGTAAGACATGAAAAACGATCAGATAAAGCCTAAGTATATAAAGATCA
AAACAAGAGACTTTATTTACCTTTACGTTTTGATACTTACATTTCGATTA
CCCTTTTCTCCAACTCTCTATTTTCATTTTTACTAATGTGAGTTGAGATC
ATTGAGAAATTAATGCATGGATGATTTTTTTCATGTGACATCTTAATATC
TACTTCTTTCCATTAAAGCACTTCTACAAGTGATATCGATCAGTGCTAAC
ATGATTGCCATGTGGGGGAAAGAAGCACAATTATATATGGCCGTCAACGA
ACTTGGTCAAGTCTACGCTACCGTAAGTCTGACATTTAATTCATTAATCC
ACATTTAGTTCCTTCANCGCTACCGTAAGTCCACATTTTATTCATTAATC
CACATTTAGTTCCTTCAAATATATACTCTGTAAAAGACCCCTGTCTCAAT
GCACTATGCATGTTCTTCGACAGTTTTATGTGATCGTTGGACGTGGGATT
AGGGCTTTGCCTGGAAATTAGTATCATCATTAAATTAGTATCATCATGCT
AGCCAGCCTTTATTCACGAAGGAAAAATAGCCTTCCATTGATCAAAAACA
TTTTTCTTTTTTTGACCCCCTCCTCCCCTCCTCAAAGGGAAGTGAAATAA
TTGGTGCAAATTTCCTAGAATCATTTTTGAGAATGGGACTAAATTTTAAA
ACTAGGTAAAATTAAGACAAATAATCGTCAAAACTTTCTGATTTTACTTC
CATTTTATACCCGACACCGCTTAACCTTATATATTTTCAGGAGACAGAAG
GTCGTGATTGTGTCTTTGTGGAGTGTTTTACACCAGAGTTCTACAACACT
TATGAAAGTTATCATTCAATAAACCATCCAACAGCTAAATATTACCTCAC
TTTACCCACGCCTGGTGAATTGGTGCAAATGACACACGACATCACTCAAA
CATCAACTTTTTATTGGGAAGTACCACAATTACATTATTCGAACATTCTA
CCATCTTCGTTGCCAATGACAACGAAAAATTCAATTAATAACACAAGAAA
AATGGTCAAAAATGTTGTTAGGTGATATTTGTTTCAAGAGTTTTATAAAC
GAGAGAAATCCAGGCAATTTCCTTATTAATTGGAGGGAAGAGAAATCGAA
TGCAAATTTCTGAGGTTAGCCTACCAGAAAGACTGAGAAAGAGACTCTCA
AACGGTCACTCCAAACACCAACATGACTTTTAGATATCATGAAAATTTCC
AATAAACAGTTTTTGACAAACCTTGCATTTTAACACACGCACGCATATAT
ACAATTTGTAAAAAAAGTAACTAAACAATAAAAAGATGTGTTCAATGCTA
AAATCAATATACAAATAAATTCACAAGTTTTTCAAAACCCTCTCTTAATT
AAGGATGGTATCCACCCTATGCGGATGAAGTGTTGCCTTGTTTTAAACGG
AAATTTTCCACCTCAGATTTTTTAGTATCCTTTCGTTGTCTAACGATAGT
TTTGCGACCTTGATCACTCATTTCCGTATCTGCACGTATCCGATATCCAC
GCCGACAGATCTCTCGGATCTCACGTTTGACAGTTTTGTTCATGAAGCAA
TAAACCCATCCATTGATGGAGCAATTGATGGTGTAAGCTAACGTGACGAA
ATAACCCAACCAGTGTGACGGGTTCTCAATGTAACCGATCGTGATGAAGG
GTACATCAAACACCACCAACCAAATAGTGGTGATGAAGAATTGGATAAAC
ACTTTACGTTCACGTGCGCTCTTACGCTGCTCGTGTACGGCGTCTAAAGA
CGTGTTACGTTGAGCTTCTCGAAGTGCTCTGAAACGTAAACAAAAAGAAT
ATGTTTGAACTACTTCTGGAGGAAAAAACACGGATTAAATGGAATTCTGG
AGTTCCATATCAGACTGATTTGTCAAGGGAACTTTTCGATCCCTTGCAAC
CATAAACGAACAATAACCTCGGAATATGTTTTGGTGAAGAGAAAGTGTTA
TTATTTGACTGGCTGATGGTATTTAATCAGATGAAAGAAACTATTCGTAG
TTTAAAACGTAACATAATTTTTTTTACCTGAAAACGAGGCCGTTGAGGAA
GTAAGTGATTGATGTGATGATGACTACCATGGTTATTTCACCCAAAGCTA
ATGTTTTGGCGCCATCGAAGTCTATACTCCAGCCCCATGACATCAAGGTG
TAATCGAAATGTAGAGAACAGCATGGGAAGAAGGAGGGGATGGAATAAGC
AATACCAAACACCCAACATCCTATACAGTACATGTTCGTCAAACGTTTCT
TGTAAAACCTGCTGTACAAATCTTTGTTACAGATGCACAAATATCGATCA
CCAGCTAGAAAGATGAGTAGTGGTAGTCCGCTGAACCATCCAATGTTCAA
TACGCCACCCAACGCGAGACTGTTGCTTAGACTTGTTCGGTAAAATAGAC
AAGGGGAAGCGTATCCAATCATTAGGAAGAGACACATACAATCTGCGATA
CCGAGACATCCAGCGATCGTAAAATAAGTCTTGTCTTTAAACTTAGGACG
TGTGAACACGACGAACATGAATAGAACGTACACCATGAGACCGAACAACG
AAACGATGAGTAGAAAGGCGCCACATATTTGACTGGTTTCTAACGAGAAG
GCCAGATCTACCGCCGTTGAGTTGTGATCCGCCATTGTTTCTCTGTTTCC
TCGTCGAATAAACACCTAAAAGTTAGACAGAACAGAAAAATGACTTTTAG
ACTTTTTATGATTTTATTGAAGTTTAATCGATTGTAAAGTTTGTTTTAGA
GTAGTAATTGTCACTTTTGATGTCTGATATATCCTTTTCAATTATACACT
TTTAACCACTTCACTACATGACTTAGTAGATTTTAATATAAAACAAATTA
TTGTCATATCAACTCACTCAGAAATGATTTTGCGGAAAGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000630XLOC_000630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001127-exon-sc0000007-1575043694:483519..483672TCONS_00001127-exon-sc0000007-1575043694:483519..483672Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1575043694:483112..483247TCONS_00001127-exon-sc0000007-1575043694:483112..483247Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1575043694:482162..482279TCONS_00001127-exon-sc0000007-1575043694:482162..482279Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1575043694:481751..481854TCONS_00001127-exon-sc0000007-1575043694:481751..481854Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1575043694:479133..481282TCONS_00001127-exon-sc0000007-1575043694:479133..481282Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1510915933:483519..483672TCONS_00001127-exon-sc0000007-1510915933:483519..483672Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1510915933:483112..483247TCONS_00001127-exon-sc0000007-1510915933:483112..483247Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1510915933:482162..482279TCONS_00001127-exon-sc0000007-1510915933:482162..482279Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1510915933:481751..481854TCONS_00001127-exon-sc0000007-1510915933:481751..481854Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1510915933:479133..481282TCONS_00001127-exon-sc0000007-1510915933:479133..481282Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1491911889:483519..483672TCONS_00001127-exon-sc0000007-1491911889:483519..483672Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1491911889:483112..483247TCONS_00001127-exon-sc0000007-1491911889:483112..483247Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1491911889:482162..482279TCONS_00001127-exon-sc0000007-1491911889:482162..482279Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1491911889:481751..481854TCONS_00001127-exon-sc0000007-1491911889:481751..481854Clytia hemisphaericaexon
TCONS_00001127-exon-sc0000007-1491911889:479133..481282TCONS_00001127-exon-sc0000007-1491911889:479133..481282Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000007supercontigsc0000007:479133..483672 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0679784	0.0679809	0.0621415	0.113553	0.0394233	0	0	0	0	0	0	0	0	0.0701987	0	0	0	0	0.0996661	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001127 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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