XLOC_002194 (gene) - C. hemisphaerica

Overview
NameXLOC_002194
Unique NameXLOC_002194
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000038:680927..687611+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002194 ID=XLOC_002194|Name=XLOC_002194|organism=Clytia hemisphaerica|type=gene|length=6685bp|location=Sequence derived from alignment at sc0000038:680927..687611+ (Clytia hemisphaerica)
aggaacacgtttatatagaactcgaggctgaaaatggtccaaaaaataag gaatagttaaggaactgctcaggctgagaagaAGTTATACTTATAAAGAA GTTAAATAttttgcgaatccaaacttagcagctttgtaaataaggaactc gataaggaactttgaggctgatgttctctgtaaaaataaggaactccagg ctcagagcaaagttaaggttccttataaaaaaaaaaacgtgtaacattGT TTCTTTTAGCAGATTTTTAAAATGGCATCAAGCAAAGAAGTACGATTTGC ATCTGAAGAGCAGCAAATTTTGGGAGCATGCGTAGTAGACTGTCCAAAAT GTACAATTTGTATGACACCTGTCACAGACGAAAACAATAAATGTCAGACG TGTCTTGAAAAGATGAAATTGTCACCAACAGGTTTTCAATTTGAAGTCGA TGGCCCTGATCGTAAAATGTTCGAATGCCCGATATGTTTATGTATTATGA GGAAGGCAACAGAACTACCTTGTGAACACTTAATGTGCCATGATTGTCTG TTTCATTATGAAGAGggacaaaaagaaaaagctaaAAGGTACGACATCCA TTTAGATTTATAAACTGAGGTTTCGCATATGGTTAGGCAAAGCTTCAGTG TTTTTAGTTTAAAGCCTGGTGATATGCTTCTGTCTTCAGCTTATTacatg tgtttttttataagcattgcacttataagcatatctaggctcagatatgg ggaaaatttaagcatatggcaagcattacttgggcctacgaaaaatgttt ttttcctgattcagggggggggggcacgcagttactacaagacatgatgt gtagtaagtgctttttcaacactttttttcaggaccaccaccctttgcag tcactacaccttggtagtaactgttttcagaaaagatttccatgtaccac ccctgtttttgagtgatatcatcaaaaaaatgctcgaaattaccctaaat tgtgattatttttcaacctaaagccatttttgtgctagattttcttttaa tttacttggttaacagctgttgagaacattttaatgataattagggaaag cataatttcaaagttgggtctgagaaaaatttcaatttttttttcgtcca tttataacaaaaatattttttttaacaaagaattttttcacaaaaaaaat cattttttgtgaaaaattttgaaacttttttaaaaataattaaaatataa gcacttactacaccaaaagtgctagttttagtgttcggcaccacccccaa acagcagttactacactgtgtagtaactgttttcataacttctgaataca gtaccaccacggtagtaagtgtcatactgtcttgtagtaactgcgtgccc cccccctgcctgattttggctttttttggctggaattttacggattttca gtatttctcTGAATTTATGCTTTGGATTTAAGcctcccctcaagcatttt tcagccttattaagctttccacctaagcatctctgagcctgttttcggat ttttgtatgcttataaaaaaaacatgtacttccTTTTTGTGTCTTGTGCA ttccttgttttttattttttcattttttcttccaatATGTATATTGGGCT TTTGTTACAGATTGTCATGGTTAGTCGCtagtttgtattttcttcagtgT ATATAAATTCACTACGTTTCCCtctaaaaaaatgtgtactctCAACAAAC ATGCTAGAAAAAAAGAGTACACGTTCAAAAGGGATTGGAGTACACGTTTA AAGGGATTGGAGTTTAGTGTTTATCTTACTAAAAAGGTGAGTTAAACATG ATCGTATTTTTTATGTTACCATAGAGACAGGGAAGGAGAAAGAGCATTAT TTTACTGCAGCATCTGCCAAACCGCATACGACCCAAATAAGGTAAACATT AATTTTATCCTTATACTGTCAAGCGATGGGGCTATTAAGTGTTAAGATTT TGTGGTTTTTTTCTCTTGTCGTTATttctaataaaataaaaagcaagCTT TTACCCTGTCCCTTGGTTTGCTTTTTCGTAGCGCTTATAAAAGGTACTGA CCACacccatcagtaaaatcaaaaagcgGTGAAAATTGTTCTGAATgcaa tgtttttttcaatttttcgattactttaggcgtacaaacgtTCGCGAGCA GTAACTTTcgtgattttcgcgaattttggcctttttcgcgaaagttaatg tcttagaaaattcttaacaggctAATTCGCGAatgtttatgctcgcgaaa ttttctttaaaaaattgaaaatctataaaactttgaaatcttaataaata taaaattttcagcATATTTCTAGCCTTTAACGCTTttttaaataccttat cggccaaaacttagtcggccctaagtgactaaattttggcttggtgacta aaattagggccagactaaaaatttgggccgactaagttttggccgataag gtaaataACCGTGTTTACCAGATtcaaggaaaatttttgtttaaaaattc tcatttttatccaatgATTCGCAAAAGTtcatgctcgcgaaaaatatttt ttcctcaaattctcgaaagtaaatgtcgtgaatttcgcgatttttcgacc tcgcgatttttcgacctcgcgaaattttctgttcgcgaaagtttgtacac ctaaagtaCTTCGATTGGTCATTCTCATTTTTAAAAGAGAATTTCAACTT CTTTTAAATTGATTCATATTTGACAGAAATATCACGTCAAATCTACAGAC AGAATGATTCAAACATCACTTCCAATTAAATGTCTACAGAAAGATTGTAA CTGGGTCGGTTGCATCCAAGATTATCAGGTATAACTATTCCATAGTACTG tagggtacctaatagccgtccccccctgctaattaatttttcgagaaTTT TCCACCCAAGACATTCTTATTGCAACCTCAATTTCCCACCTAGGACGTTT CTATTGCAACCTGGGGGGGGCAGCttagttttgagatttttccaaatttg tttATATTAAAAATTCCATTGTATGCTAACCTGAATTGACTGTGCTTAGT GAGGCCCTCCAAACAGTTTTGGTGAAAAAAATtgtgatagggactttttt caAGCGTTATTACGcgatttagaatttttattttcgtgattgcgtgatca gaggtcaaaacgtgatcgtgatttgaaagatttttgagccgtgatgcgtg atttggactttttcaaagggatgcatGATTATCAAAATGTTTTGCTGAAT TTGTGTGATCGTGATCGAacacaaaaaattgcgtgatatcgtgatcagac ttACCGCTTGAGTGGCCTCCTTGATCATGAAGTTCTTAAGCATAACTCTT CCTATTTATTAACACAGGAACACGAGATGAAATGCGATTTCTTGATAATA CCATGCCCTTGCTGAAATTGGGTGTTTCGCTAAGgtaatgacaatttttt ttaacttttaatttaaCTTAATTGTAGTAATACAAAATATCTAAAGCATT CAATTtgtgggacaagctggagtttttacaagctcttatttgatttggtt ggtcgttaagatgtaataaaagaatcttattactttttctaaagaacgcg tcatctctatcactttaaatgaccaattagtgaagtatcttgtaaaaact ctagCTCATCCCCAATTTGTTGGAACTGTTTATTTCTGCTTATTATGACT TATGAAGGATAAGCAATAGTTATCGCACGGTACCGAGTGCAATATGGGAT TTTTTTTCGAGTTTTCGTCTTCTAAATTAATGATCACTTCGAACTTGagg agttttgaggattttgagTTATATTCTATATTATATACTTTTTTCTATGG TCACACTGTAATTAATAGATCATAGCCATCTAAACTTCACTAGAGTCTTT GCCCACTTTTTACTGACGAGAAATTTCCAATTTTACAAAGATTCTCTCTA CCAGCACTTCAAACAAATCTCATGGCTTTTCAGGTCAAACGCAGAGAGCT ACAAACACATATGGTATCCGAAAAATCTACCCATGATATTCTAGTCCTAA AGTCTCTCAGTCTTTTCAGCCAAGAACGAGTCAAGTATCAACATACGATT GATACGCAAAGCCAACAAATTGCTGACTTACAGAAGACAGTAAAGCAAAA TGCTAAGGACATTGAAACCGTAACGAAAACGAATATTGCTATGAAAACCA AGATCGATGCTCAATCGAAAGCTATCGCAACAAACGAGAAGAAAGTATTG TTAAAAGAAAATCTTGCCCTTAGTGGAAGAATTGATGCTGAGAACCTAAG AGTTGACCAGGCATGTGAACAATTGACCAAGGCAGAAATTAACGGCACCA TCACGAAActgataaaaaaagatttagatAGTGTGGCAAAAAAGTTGGAT ACGGTAGAAGAGACGGTAACGAATGATCTTACGAGTGCATTGAGACAGTT ATGTCATGATTTTAAAAACCGGGCGAAGGATCTATGTGACCTCCAAACAT TTTGCGACAGATTGTGTTTGCTAAATAATTTCTTGGCACAGCACCGTGTA TTTGACAACAAATTTACTCTGTATGTATTTAAACAGGCCGACCTTGATCA AAATGGGAAAGAGCTTAAATCTTGCCACGCAGTAATTGAAGGATTGAAAA ACGAGAATCAAGAGGAATGTCAGTTACTTcaaagattgaataaaataatG GTGCTGTACAGTGATGTTATATACGGTATAACATGGTCTCAAAGGCTTGT GCGCATGTCCGACAAGATGCAGCCTGGTGAATTTTTAGAGAAATATATCA AGTTTTATGGATACGCTAGGGATCGAATAGGTGTTAAAATATACAACGAT GTTGAAGTTTTCAACAAGGCGACAAGTCGAGAGAAATGGTGCAAATATGA AACTGCCGTgatctgacaaaaggaagtaaccatcaatttttgaaaattca tatttttgcaaaaatcaactCCTAAGAGTCCAGCTTGTGTTTTCCAGTAG TTGATTTCTAGTAAAAgacttctttttatcaatttttttggactaaagtt tcattttattttcggACAAAAGGAAGTAAGTCACTTACTTCTTTTTatag cctgaaaaattaaagttgcttgcaatattttgcagtttattttctgacaa aaagaagtAACTCTAAAATTTTAAGCTTGAAAGAGCTTGAGTAGAGTAAA ACTTGTCtggatttttccaaaatcaagaTGTTAAAACTTCTTTTAACTCC TTCCTTTTAAATATTATACTATTCTAGGGTTTGGTCTTTCACAATCAGCA AAAGTTTTGATCTTAAAACGATACCATTGATCTTGAATAAGGTCAACCTC GTTTATGCAATTATCTCAAAATAGGAAAAATGcagttacttccttttgtc agatcACGGCAGAATATGACACAGCTTGTAATTTATCAACGGATGAAAAA GATCTATGGATTGCTTTATGGATACCAAGTGGTTTGAAAAACATTTGTCT CCTTAATTGGACGGAAGAGGCTAAGAAGAAGCAATTACCTATTGATACGA GCGTTAAAATTGAAAGGGATTTTTTGTTGAGAGATTATGTAATCTTAGAA GTTGAATTGAATCCTTGTGAAGAAAGCAGTAGGTAGTACCGCTTTTAAAT AACCCGGCGACCTTCAAGCCCGAATGACAATAAAGTAGAAAATATCACCA AAGCTGTGAAAAAAAGTTgtgataaaaaacaaaaaacaacaaaagtcaTT CCCAGTTTgtataaaataaaatgtgtACATACCAGCTGAATTGACAGTGG AATTTTTCGCATCTTCTTTCATGAAGTCCGGTAGATTAATCGGATTGAAT GTACAATTCTTTCGATGAGTTGCCAGTAATTCAAGCTTTCCGACATGTAC GCAGCCTCTTGATCGGAAAGGACAAGCAACCTACATCGTAGTAATgtaaa agtatatttttatcaatagcaGTAAGGAAGAATCCAGGCAGATCGACACC AAAGTGGCATGAAACTAACAGTAGCggaaaaaagtgtcttttcttcctTA CTTCCATATGTATCGAGTACTGTAAAACACTGCTCATTGCTCATTGTATA TAGCCTCGATTTATTAATTATCATCAATGAAtacaatatacaatttttta tgTAATACAAATCAAATTCAATTAACCTCATGGTTTTTTCAACCCAGAGT TTGGTAGTTTTTTCATAAacccaaaccatggttggcaagtgtatactctt tttttataagcataacgtttataagcatactcaGGCTCAAATTcagtaaa aaataagcataatgccAAGCATACCTCCAAGTTGAAATGAAATAATAATC gtgcagcttttctaaaacgctgacctttttaaggttacttttaaagctgt ttgagctttcttagaccaaagattttcaCCTGCAGCGCCAAAtcacaaaa agaaaactttcattcttTGAACCGAATCAATGTTTTgacttaaaaattcg aaattttcatgaacccaaagaaaatcaacaaatcaaaGCCTAAGTAAGTA AATAAAcataaattaaggctgaaaaagAGATTTTCCTAATAAGCACATTG AGCCTCGATCTGATTTTTCCGAatgctttaaagaa
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00003919TCONS_00003919Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00003919-proteinTCONS_00003919-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000038supercontigsc0000038:680927..687611 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.13 1.25 1.07 1.19 2.28 1.15 2.08 1.64 1.67 1.21 1.37 1.52 4.01 3.19 3.95 4.55 1.88 2.44 2.48 2.33 2.95 2.86 1.96 2.32 3.22 3.45 3.39 4.41 1.91 2.07