XLOC_002775 (gene) - C. hemisphaerica

Overview
NameXLOC_002775
Unique NameXLOC_002775
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000049:204460..214520-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002775 ID=XLOC_002775|Name=XLOC_002775|organism=Clytia hemisphaerica|type=gene|length=10061bp|location=Sequence derived from alignment at sc0000049:204460..214520- (Clytia hemisphaerica)
TTCAAAGCAGATCCCATGAGCTTCTTCTGAGTCAAATACAAAGTTCCAGT
AGATGCAATAATAGCAATACTTGTGATTAAACCAAGTTGCAGCATTGGCC
AATGGAAATATTCAACTGCCATCAAATTGATTTCGAGCTCCATTTGAAAG
TATTGAAAAGCTAGAAACCCTTCAGCGACCAACAATAACATTAGATATCT
ATCCTTTACAATTTCCTTTGTTGTCCATAGTTTGTCCTCATTGGATATCC
TTGCATTACTATTATTCTTGTTAAAATCAGAGAAAGGACTTTCCGGATCT
TTGGTCAAATTGTGTAGCCCGAAATAAGAGAAGATCCACATGCATGATGT
AATGGAAGCAAGGAATATGCCAATGAAATTATCTTGACTGATTCTCCACG
AACCGATTTGGAAATGAATGCCATAGAAAAACAAAGGTGTGCATGGTGCG
AGTGCCATACACGTCGTCGAGATGAATGCTTTCAATGATAGCATTTGTGC
CAACTCCTTCTTCTCCTTATAAATGCGATTGAACTCTCCTGGGAAAAGAA
AAATGAAACATGAATGAAGTATTTCGTAAAACTAAATGGATGGAGTCAAT
AATTTACTTGGTATTTTAGGATGATTTTCATTCTCTCATTAGTTCTCCGG
GATTATAAGGATCCACGAACCGGCTTGACTGTTTCGCTCGGGGACTGTAT
AAACCGGTATAAGAACTCTGCAAGACTTGGTAAGAAAATATGGAGGTTTG
AACTACCATCTTAAAGGTATTATGCCAAGCGAATTTTATTTTTAAAATTT
TCCATTAAAATTAACCTATTACTGAAGCTCAAATTCCTGCTGCAATACCG
CACACAAAGCGGCCCAAAACTGAGGCATAGTTTTAACCTTATAAATTCGG
TTTTTGATACCTTTTAAAACATGTTTCTCATCAATTCGAGATTTTTTCCA
GTCGGTGCAAGCCGACGTTGATTTTTCAGGGAGCCATCAAAAATAAAGTC
GTTTATTTTTTGGTGCAGAAAGAAGTTAAAAATTCACTTAAAACTATTTT
CGACGGCAAAATTTCTGGCATATTTTGACCCTAACCCCGATGATAGAAAT
TTTCGGACCATAATCATAATCGGACCCAGTGAAATTTTAGTTTTTTCATA
CAGCCACCCCGGTGTAACCTGATAACAGCTGTTCATTATTTTCTTACGTG
CACGGTAAACCTCTGAAGGCACTTGAAAATCATACAGCTGAGGAAAATAG
TCCTCCCGCGGAAAATTTTACAACAAGAATCTTTTCGTGCGCCAGAAAGT
TAAAAACTGATACGGCGCCCTATTCGTAAACACAATCACGCAACTTTGTT
GTCGTCCCCAGTCTTTTTAGACGAACGCGGTCCTTACGATTTTGAGATAG
CATATTCCTCAGATTGTAAGTTATCAATTATTTACCTGTAACTGCAGCAC
CAATTCCAGTTGCAATACCACACACAAAGCGGCCCAAAACAGGAAGCCAG
GGCGACCAAGTCAGTGTATATGTTAGATTACCAATAATGTTAAATAACGA
TAAAGTCAATACAATCTTCCTTAAATCTCTTGTCTTATCCATTGCTCGTC
CACATATGTAGTTTGAAATAATAGCGCTGAGAAATATTGCTGCCATTGAG
CATCCATAATAAAATTTAGGATTTTCGACATTGAAAGATTTTTTATAGTA
ATATAAAGCAGAAATTGCAGTCGATGAGTACTCAAAGCAATAAAGACATC
GGTATATTATACCAATCGATACTGTTAGCTTTCGCTTTAATTTCCATGTC
AAATGCATGTTTCTAAAACACTTGTTCAACACTCTGTTCATAAACAGCCA
ACCAAAGTCATAAAATTTGAAAATAAATTGATTTCTTATTAATTACAGAG
GTTTGAACCAATTACATTAATATCATGTTACACTATCGCATTTTCCATAC
AAAAATCTTTTTTAATTGGATTTATGGAGTATATAATATAAATTGCAATA
TTGCACGTTGAAGGCGTCCTCAAGTAACGTGTTTAAATTTTAATGAACCA
GCTGCGCTGGAAGGTCGCCTGAATAGAATAGCTTGAAGAGCTTAAAAGTT
TGAAAAAAGTAAAACATGAAANCTTAATGAACTAGCTGCGCTGGAAGGTC
GCCTGAATAGAATAGCTTGAAGAGCTTAAACGTTTGAAAAAAGTAAAACA
CGAAAAGCTTAACAGTGTAACACGTGATTTGCGAATGTGCCAAATCGTTA
AAAAGCAATGTGCTTTTGAGTTGCATTAATGTCAAAATGGCTGAAGTGGA
TTTTAAGTTAATATTAGAAAAGATAAAATGAGATTGGAATCAGCCTGAAA
AATATTCTTCAGAAACAAATATGTAATATAATATTCTTTTGTCATCCCTA
AAATCTTAAAGGTTTTCAGAAAGTTATAATTTTTTTAAACTAACATTAGG
ATATAGGTGAAAATAGCTTAAATTTGTTCTGAAGGAATAAAAAAACCTTC
CAAGTTACTATAGTAGGGGGGAATTTGTTCGTTTTTTTGAGGTCGCTCGA
TTTTTTTAGTCAAAGCACTTATTATAATTTTTTGGAAAGCTAAGGGGTAG
GGGAATCAAAATAACTTGGTTGCCAAATTTTTTTCGGACCAGTCTTACTT
TTTTGAGAGCTTTCCAAAAATATACAACAGGTCTCCGTTTTCTCAAGCTA
AAATTTTCATTAATTTTTCACCCTATGATTTTTGCCTGAGATCTTCGTAT
TTGTCCGAAAATCACACCAAGGTGTCCGAAAAAAATTGCAACCAAGTTAC
TTTGATTCCCCCACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCCTTG
AATATAAAAATCGAGCGATTTTACAAATTCCCCCCTACTATTAAGGACAC
ATTCAATTTATAAAGTTCGAGTTTGAAGACGGTCACTTAATCATATCATG
TTTCTTGTTTGTATAATAAACAAGAGCCGCAAAGATGCGGATAAATATTT
CCTTTACAAATGTTAAAATAATAATTGNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNTATTTTTTAATACGCCGTTCATTAA
CTCAAATCAAATGACTTTGGAGGTTCGGTGAAATGGTGGCCAAATTGCCG
TCCCATGTTTTGTCAGATATTCCCAAGCTGGAGCAGTTGACGGTAAGAAA
ATCTCCAAATTCATGATAAAATTTTCCTAGTTTAAAACACATGTTGCAAA
AGATCTCTAGATTCACAACTAAAGTTTTCCACGTTTTAAAATGCACGCGG
GGAAGCAAATCTCCAAGTTCAAGAAAAATTTTAATTGTACATGTGAGGTG
ATTTCAAATTATTTACATCCATATTCAATGTAGGCTGCACACATCCCCTC
TGATAAGTTTTGATATAGGGGATGCGAATCAGGCTCACAAAACCATTCCG
AACTTAGCAAAAAATCTGCTAACCAAAAAAAGAGTTGAATGATAGAGAAC
TTTGATTGACAGTTTGTCGTCTTTTGTTATCTTGAGAGTTTTGTTNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNACAATACGCTTCTGAAACGGCCGA
CGTTGCCCGATCGACAAGGAGAATAGAGCGCCGTACCGATATTTACCGCC
TCGAAAAAAGAACATCCTACTTTTTTTACCGCCGGAGCTTGATCTAAAAA
GAGACTCATTTACAAACTCACGAAATTGACCAAAACCGGCGTTAGACTTG
AAGAAGGAAGGAGAAGGAGGAGAAGGAGAAAAATTACCGTTTTAACAAAT
ATTTCCTATATAGATAGATAGGAAATATTTAAAAATTGTTGCTAGAAAGT
TTCAATAAATTATTAGTAAATTTAATAATACAGTTGAAGTAATCTTAACA
AAAGTAAAAAATTTTGGAGGCAATTTTAATATGACTGCGAGCTTGAAAAA
TTAAATTTGACGGGAATTTATTTGCCTTGAAATAGATAACATTTGGGGGA
AGAAAACAATAATCTAAGTTGTATGTTTGTTCAAGAAATTTTAAGTCAAT
ACTCGCAATGGTTACACAAAATTACTCGTCTTGGAACGGTGAATCATCAA
TCAAATCTTGCTTTAGCGTTTAGGTGATAAATGTTCTTTTGTTTCACTTC
AAATCTGCTAATTGTAGCTAAAGAAATTCATGGTATAACTTGATCTGGCA
ATTAATACATTGGTTAGGTTGCCATATGCAGTGCGTGATTGGTTGGGACA
TGCTATCAACTGTTATCATAGATTCAATTCGAGTAATTGAAACAATACAC
AGGAAAAAATTATTGATTCCTTAGCCTAGGGGTTGTTCATTTTCAGATGT
GTTTTTTTATTCGATCACATTAGTCTAGAATTTTAAGTTAGTGAAAGTAA
GGAAACTAGGGAAACCTATTTTCCAATGCTGGAAGTGCATTACCAATGTG
TTAGTGAAAACGGATTTCCACATGTGGAAAACTAATATTTTTAACGTTCT
AGTTGCCCATTCAGAATGGCATGCGGAAATCAAAAATTCCAAGTTTTTCT
AAACTGATTATGGATGAGTCGGTAAAAGAGAGATCACGAGTTTTTAAAAT
GATCACTTTCTACAAGCTAGGGAAAGGAAATATCACGAATTGTGACCTTG
CTTGCTTTATTCTATTCTTTCTCTGGATCAGGAAATGTGATTTATCGAAT
TAGGGAAATAAAATTTCCCAGAATGGGAAATTCGATTTCCCGAACGCTTT
ATTTTGAGTGTATCCTTTAACCAATTAATTAAATCAGAACTTATTTCAAA
AATTTAAACTGTCACAAATTAGAGCCTAAGTTCGGGGAATTTATTTTCAG
TTTAGGGAAAATTGATTTCCCTAACTTGTATTATGCATGCGCGAGAAAAA
ACCACAAGTGATTTTTCACTCAAAAGTGTTCGAGTCGTATGTGAAGCAAA
CCATTATAAGGGTGTATTCGATCAGTGTGTAACACAATGCTAAAGGGGAG
GCGTCCCGCCAGGGCGGCCTCATTCGTTCGCAATGGACTTGCGTCGCAAG
GGCTCAGTGGATCGGTGAGCCGGGTTTGAGGTCATTAAGTTGGCTCTCTA
GTGCAGCTTCACTGTTGTGACAAAATTGACAAAAGTGCCGGGATTCTCAA
AGTAGCGCAAGTACATGTCAGAACGAATGAGAGCTATCGAACCAATGCTC
ACAGAATGATCGAATACATTTAATTATTTCTTTCTTAATTTCGTTCTATA
AATCAGGATTTAATTCGTGAATATGGGTAACCCTATGGGGTTTTATTGGG
GTTCGCTCAAGAAAAGCACTTTTCAACAATAGGGAAATTCAACATCCCTA
GGTAGTCATAAGATCGGGAAATTTCATTTCCGTAACTAGGGAGCTGTTGC
ACCTTCCCTAGTTAGGGATTGGTTAGGGAAAAATCTAGATTTCCAGATCT
GGAAATATACATTTCCATAGCCTAGGGAATCAAAAAACTTTTCCTGTGTA
AATACTACGGAGCTAATTAGAATCTATATACCGCAAATACTATCTGATAA
GTTTTAGTAGGGGGAAATTTGTTCGTTTTTTTGAGGTCGCTCGATTTTTT
TAGTCAAAGCACTTGTTATACATTTTTGGAAAGCTAAGGGGTAGGGGAAT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTGA
GAGCTTTCCAAAAATATACAACAGGTTTCCGTTTTCTCAAGCTAAAATTT
TCACTAATTTTTCACCCTATGATTTTTGCCCGAGACTGTCGTATTTGTCA
GAAGATCACACCAAAGTGTCCGAAGCAAAATTGGCACCCAAGTTATTTTG
ATTCCCCTACCCCTTAGCTTTCCAAAAATGTATAACAAGTGCTTTGACTA
AAAAAATCGAGCGATTTTACAAATTTCCCCCTACTATTGCGTGGCGTAAT
ATAACAGAGATAAAACGGCTTATGCAAGAATTTACGCGGAAAATAATTTC
CCGATCCACCGAACATTTAATTCCGAATCGGGCGACCAAACTTTCACATT
TTTGTCTTGATGAGGAGAAACACCGAATTTAAAGGTCCCTTTCACTTCGG
AAAAGATTTGGAAATAGTTTGATGTTAAATTTGAATGATAAGGAGGTTTA
TTATCACATGATACTTTTTCTTTCAACATAGTGAAACCGATTCGACAACA
ATAACAAAATCAAAATATAAGTAATTAAACTATGGCTTTCTTAAGGAAAA
AATTGGTCACAAAATGGTGAAAATAATAAGATTTTAATTTAAGAACATTT
TTAGGCTTGAAACTCAAAAAGTTAAGAACATCCTAATGCTTCAAAAATTT
TACAACGTGTAGCCTAGCTAAATTACTCTTCAATGCCAGTACAGTTAATT
CTGAAAATAGTTTGATTCGTTCATTGCCACACATCAACAGTTGTAAGAAG
TTAAATTTGAATATAATCAAAGTTTGTTGATCACTTTGTACTTTTTCTTT
CCACATAGTAAAACCGATTCGACAACAATAACAAAATTAAAATATAAGTA
ATTAAACTATAGACTGGAATTATATACTTCAAAATATCATAAACATAACT
GGCAGTAAAAAAAGCCAAGCACGCCAAAGCTCTGGCGATGATATATCGAT
GGGATTCGACGATACTCGAGGAATGTGAAGGAGTTATGGAGAACATCAAC
CATTGACAGTAAACTGTCGATCCGAAACCCTGAACGATGTTAAAGAATAA
GGAGGTGAAGATAACTGCATGCTGCAATGGTTTATCGAACTTTGTAACAG
TACCAAATAAAATAATGGATTCTAGAACTCCAATAATTACCAAACCAACA
ACATAGAGAAAGAATATATTCAAAGCAGAACCCATGAGTTTCTTCTGAGT
CAAATACAAAGTTCCAGTAGACACAATAATAGCAATACTTGTGATTAAAC
CAAGTTGCAGCATTGGCCAATGGAAATATTCAACTGCCATCAAATTGATT
TCGAGCTCCATTTGAAAGTATTGAAAAGCTAGAAACCCTTCAGCGACCAA
CAATAACATTAGATGTCGATCCTTTAGAATGTCCTTTGTTGTCCATAGTT
TGTCATCATTGGATGGTTTTGCATTACTATTATTCTTGTTTATAGTGTTA
CAATCAGAGAAAGGACTTTCCGGATCCTTGGTCAAATTGTGTAGCCCGAA
ATAAGAGAAGATCCACATGAATGACGTAATTGAAGCAAGAAATATGCCAA
TGAAATTATCTTGATTGATTTTCCACGAACCGATTTGGAAATGAATGCCA
TAGAAAAACAAAGGCGTGCATGGTGCGAGTGCCATACAGGTCGTCGAGAT
AAGTTCTTTCAACGATAGCATTTGTGCCAACTCCTTCTTCTTCTTATAAA
TGCGATTGAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004904TCONS_00004904Clytia hemisphaericatranscript
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:204460..214520 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.78	0.35	0.01	0	0	0.19	0.14	0	0.02	0.07	0.11	0.02	0.95	0.27	1.05	0.53	0.46	0	0.14	0.15	0.1	0.47	1.51	0.84	1.35	0	0	0	1.5	1.16