XLOC_002789 (gene) - C. hemisphaerica

Overview
NameXLOC_002789
Unique NameXLOC_002789
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000049:634160..641757-

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_002789 ID=XLOC_002789|Name=XLOC_002789|organism=Clytia hemisphaerica|type=gene|length=7598bp|location=Sequence derived from alignment at sc0000049:634160..641757- (Clytia hemisphaerica)
GCCACCGAGATTTTCTTGTTCACTGTTGTAGTAAGTCGCCATCATGTAAG
TCCTTTGAAACACTTTTCACATTTTACAGTTTGTAATTGATAAACCGATC
AACTCCTGCCACTCTAATGTCTTTGTCTTAAAATTATTACCTAGCTCTAC
CTCTACCAGGATAGAACAACTTCAAATTTATCGATTATATATTTCATTTA
TATCTTTTGATCGCTTCAATGCGACAACTTTTAAAACATTTAACTTCATT
TTGGCTTTGAAAAAGTTGAACCCCACCCGGGGGTAATATACTTTCGACCC
TCGGACCGTTTAGCGGGACTAAAAAGGATGAAAAAGGAAAAATTTGTGAA
TTTTACTATCCTTTGGGACCAATTTGACCAAATATTCGATCTTTCTGGGG
ACAAAAAGTTGACATTTTCCTATCCTTAGTGACTGAAATTGGGACTGGAT
GTCACAGGTCGGAATGATTTCGGCATGTGATTTTCATGGTAGAACTGGCA
GGTCCCAAAAAGGAACCGTAATGGGCGGCAGGGCACATACCTGTACCCGT
ACCCTTCACTTGTCTAGGTACCCCCTTACCCCCAACCCCGGAAATCCAAC
CACCTTTTATACTAAGCTGGTTTTTTATCTGCAGTAATTTGCGTTAATAC
GCTTAAGAACAATTATCAAGGCATGTTTTATACCTCAGGCATGTTTATAC
TTCAATTTTCATCAGAATTTCATGCTCTTTCCGCTGGGACAATCAGATTT
TGAGTATTGTCAAAAAAGGAGTCAAAATTTGGTGTTGCTGTTTGAAATTT
TAATTTTAGACCGCAAAGTAGAATGGATGGTCTAGTATAGGCTAAGACAC
TTGTTTCCTAGACGATTTTTGTCGTCCGTTAGAAGGATAGCAAACGCAGA
AAAAAATGCTTAAAAGGGACCTGTTTATTTTTAACATCGACCTCTAACCT
TTCGTCGCCATGTTGAAAATCTCCAAAATTCAAATTTTTGGCGGCAACGC
GCTCCCTGCACAAAGGATAAAGCCTCGCTTTGTTTTTGAAACAACGAGTT
ATCCGTCCATCCGTTAGAGGTCGATGTTTTTAACAAGACTGAGAATTTTA
TTCCTTTTCGAGTGTTTTTCGTCACTCGCCGCAATTAGATTCAGTTAATT
TTGTATTGCGTCATTTTATTCTGCCTGTTACATTTGTGAAAATACTTCCA
ATCCATCACGGCGGCTTACGGGAAAAAATAATGGCGGTAGAGTTTGGAAC
AAATTGTAAACACCTCCGCCACTGCTTACTCCGCCAAGGGCTAAACTTAG
TTTTCAAATTCATCCCGCCTCCTAAATCATTCTCTTTTAAAGATCTTGTT
ATGATATAGGTAGGATCGTCTACTTGTTGCCTGTTTCTATCCAACCTCGC
AATTTTTTATCACTTTGTCTTTGTTGTTTTGTCTTTGTCTTGATTGTGAC
GTCTATATTTCTTAATAGCGAGGTTAAGCACGGGTTTATTTTGACCGTAA
AGTACCTCTCATGCTCAAACTGCTTGCCAACCTTTTGTACAGGGCCTCTG
ACATATTTAATGACTTTATCACCTTTGCTATGTGATGCCCTCTAATTCAA
GATGTACTACGCAACAACGGCAGTGACCCCAATATATCCGTCACACTTGC
ATATGATGTTTGAAAGACGTTGACCGTTGTCCGTCAAAGTCAAGCGATTC
AACTTCGTGTCCGTTTTATTGTCTCCCGATCGTTCAGCCAACCACTGCCC
CGTTTGAAATATGACTGCTACCGATCTTAAAAATTGTTATGTCAATAATT
ATCGTCACTTGAGTCATATTTCGTCAAAAACAAATACAGTGATATCTCAT
ATAATAACAGAAAGGTAAAGAAAACATTACAAAATTATCGAATTTCAGGT
CGCTCGCAATACTACCCCAACATTGTTATTTTTTTGACACTGTAGTAGTA
ATGTCATGAAAAAGTTTGAGTAGAAGTATATAGCATCAAGAAAAATAATT
TTGTTGGTTGGTTTGTGTATGAAGCTATTCTAAGAATCTAAGGAAGTTGT
GTTGTGGTGTTGTACAATACCTTCGTGTAAAGATTTTTTCTGTTGCTACT
TTTTGTTTCCATCACAGAAAGTAAAAACTTTCTTAGAAGAGAGAAGGATA
TATTTCAGTGCGTGCAAAAATGGTTTTATCAACTTTACGTGGAGTGCTGG
CCAGACGTCCGTTATTAAAAAGTGTTGTCACAGTTACAAGTTTGATCACA
GCAGCTGATATAAGTTGCCAGTTGATCGAGAATAAAGGTGAAACTTTCAA
TTGGATTCGATTACGTAACATGATGAGCATCGGTGTCTGTTACTATGGGC
CGTTCTATTATTACTACTACGGTATGCTTGATCGTAAACTACCCGGTAAA
AACCCTCGCACCATTGCTTTGAAATTATTGATCGACCAAGTGGTAGTCAC
CATACCAAGTCTAGCCATCTTTTACGTTTTTATCAGCGCTATTGAAGGAA
AAAATATTGAGGAAACGAAAACGGAACTTCGCAGTAAATTCTTACCGACG
TACGCAACGGCCTGTTGCTTTTGGCCGGGTATACAAGCCTTAAACTTTGC
GCTGGTGCCACCGCAATACCGTGTCCTGATGGTGTCAACTTCCACCTTTG
TGTGGTTGACCTTCCTTTCGTATGTCAAGAACCGACCAAAACTTCCCTAC
TTGTTCGTCAAAATCAATGAACTGACAGGCGTTCAAACCACTGAAGTTGA
AGGATAATTCAATTTGCGTTTCGATGTACGACTTTCCAATGAATATACTT
AAACTTGAGTCCAAAAAAAAACAATAGCAAAGTAAATTTGGACAGTTTTT
AGTAAAAATTTTGAATTTTTGTAAATTTTCTAAATTTAATAGATATATTG
ATAGATATTATAGGCATACATTATGTTTTGTTTTTTTTTAATTTAGTACA
TCTCGGCTGAAAGTCAACTTACTCAAAAGTGCCATTTTCTTCTCTTTCGC
CCCTCTCTTTCATGGCCTTTCATCCAGGTTCGGTTTGGCGAATACTGAAT
AGTGAACACAGCTATTATTATTCTGCCGAAAACTAATCTTAGTGTTTTTT
TTGCCAAATTCATCTAAAATTGTTCTCGTCAAAATTAAAAAAAATTGTTA
CCACAAGTTAAGTTTTTGCTTAGACTAAATTTATTGTGAACTATCCAAAA
AATCGTCTGATGCCCCCTTTCATAAACGCTCGCTGCTAGGGGAAAAAGAA
CCGGTATATAGACCATGCCGTTCCCCAAAATTAAAAGAAATTCGTCACAA
TTATCGCCAATATAAGTTTTAAGCTAAAGAGTTAATTAAAACAACCGTGT
GTTCTTTTTGGCTCTTTTCAATTTTTTGACACATTTTCGTTAATTTGATA
TTGAAAGCGAAACAAGTTCTCTTCAAATATTAGAGTATTCAAACACTTTG
AACCACCTTTCTTTTTATACTCCGTTCTAAAGGTTCTAAAGGATGTGTGA
AAATTATTAAAGTTGTGTTTCAATTGAACTTAACGCGTTTGCCGTTCACT
GCTAATCTTTAAATGGGGGAAAAATTCATTTCATTTCTCGATGGCAACGT
ATTTTCACCAGCTTTCATTCTTCTACATCTCATCGCGAATAATGTCTGCT
CAGGAGGGTGTTCGAATGCTACGAGTTGTTGAAATAAGACATTTTACACC
TCCACCATCGGGAGCTTTTATGGAAAATGTGTTTAAAGAAGGTGGCAATA
TTTTCATGACTAATAGAGCTCAGAAATTTCAATTTTCCAAATGAAGATAC
GATAGTAGTATCAAGAAGTCGAACATCGCTGCCTCGGGTAAGTTTCGGTC
AAGTCGTTTTTTATTCTTTTATCATGTTTTTGAAATGATTTTTTACGTCT
AAAGATTTTATTTGCGATTTAGGTAAATAGAAGAAGTTCTTGTCCATTAC
GGACGTTACTGACTCTAGGTAGTTTGTTGCAGTCGATAATCCCTTTTTAA
TCGGGCCTATCACTGCCGATGTAGAATCTGTATGGGAAAATAATGAAATG
GTGGACCTCTGTACTAAGAAAGAATGAAGTTTTTAACATCAAAGAAAACA
ATTCATTTCTTTCTTCTTCATTTTTCCTCAAGAATGAAAGCGCTCTAAAT
GATCTTTTCAATGGTATAAAGTTTTTTAAGTGTAAAAAATTTGTCGAAAA
TGGCAAGCAAAGTTAAGTTAGTGTACACCGTGCACCTAAAGTAAAGCGAA
TACTGTAGGCTTTGAGAACATTTTTTTCGATTGCCGCCATTATCGAATCA
TCAAATCATGGCTTGGCAGCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNGGGGCCGGGGGGGGGGGGGTTCCAG
CCATGCAAATGTAATTATCATTAAGTCTACAGATACAAAATCTGATGAAA
AACCTTAATTCACTAACCAGAAACCAAAATAATCTCATTGAAAGATAAAA
GGATTTCTTTTCCTACATTTCAAAGATAAAGCGAGAATATCATAAATGAT
TTTTTTTTATGCAAGTGTCTGTCTATGAATCAGGTGAGTGAGAAAGTGTG
CTATAATTCAGAAATATTACTCGGTGCGCCAAAAAAAATTACAGTTTTGT
CAAGATTTTGTATGATTTAAGTTTTTTGTTGATTCTTCTTAAACCTTTAT
GTAAGCTCGCATTATCTTGCCAAACCTGTATATACTATTTTTTGGCGAAC
CCGTTATATCTAAGCATTTGGGATTTTATGGACTTTAAAAGCTCGTACAA
GCCATCACTACAATATTTTAACCAATTCAAGGTATTTGTAGAGCTCTATG
ATTGTGTTGCTATAATTAAATATTAGTAACCCACTGACACAACTGTGCAA
TTAAATGCTTCCAAACAAGATTCGCATCAAGGAATCCCACCAAGAAATTT
AAATACACACAATTTCCTGACATGCAAATTACTCACATTTCATAAGATTA
AACCAAATCTTTTAATATCAAATTTGAACGAAATTATAAATTGTTTCTTT
AGACCTTTTGTAAGTACGTTTTAAATGTGCTTGATTTGTTTGTGTTAGAT
TCTGTCTGAGAAACTTGGTTTTGNAGACCTTTTGTAAGTATGTTTTAAAT
GTGCTTGATTTGTTTGTGTTAGATTCTGTCTGAGAAACTTGTTTTTCAAA
CGACGCCACTTTCTTCAATTTCGTTCTTTTTCACTTAGTTGGGAATGACG
TCATCAGTTGAATGCACTACCAAAAGTCGCTTGTTAGGACATCAAGAGAA
TTTGTTTCTCTCGCTGAACCAATTGGTCGGACCACTTGCTGTATACGCTA
ACATCAATGTGATCGAGTCAAAGAATGAGATATTGGTTGATCGAGTCAAG
GCTGCGTTCGAAGAGTGTAGCAAACGGAACTTTTTGATGCGCGCATGCGT
CAACGTTGATAGCGATGGCGTTGCATTGTTTACGCCCATCAACGAAGAAA
GATTGATGAGTGATTGGGCACATGTGGATGAGATCCTATTGGAGGAGGAC
GAAGAATGGACTGAGTTGTTACCACGCGTCTTGGAAAAGAAAATCGATTT
CCAGAACGGCCCGTTATGGTATGTGAAATGGTTGCGCGTTGAAAACAACA
ACATCAACTCTACAACAGATGGTCGGAATCGGTTCACTTACATTATGATT
TGGGTTTCTTCGCATATTATCATTGATGGGAAGTCTGGGTCCAATCTAAT
CTTCAATCAAATTATGCCATTATTGAATGACAAATCTCTTGACCAATCGA
ATCGCATTTATTTCGGCAAACCAATGGAAAAAGCCATTTATAATTTTAGT
GAGGATAAGATGGCGGTCAGTGAGCGATCGGTCCCTTTCTTGTTTCGAAC
GGTCACTAATGGATTCGTATGGAAACAATCTCTTAATGATGGAATCGATA
AAGTCTTCAAATCTTCCAAAGATGCCACTTTAGAGGAAGAATGCAGATGG
CCACTACAAAATTTTTATCAATCCTTTATCGTTGATGGTGAGACTAACGT
CAAAGTGGTTCAAATCGCAAAATCACGAAGCGTGAGCGTGCATAGCGTGT
TAATGGTGCTAGTCCATCACGCTTTAGATCAAGCACGGAAAAAGTTTAAC
CTGTCACTTGGCTCTGATATCCTCCTTTACCCAATCGACGTCAGGAAATT
CCAGGTGGATTTATCCGACCCTCAACGCATGCCACTTGGAGACTATCATA
AAATGGGTCAACATAAAATGCTAGCCATCAACTTGAATGACGAAAACGCT
TTCTTCAAAATGGCGGAACAAGTCAAAATGGGAATACAAGAACACAACCA
ACCCATCCAAGAAAAATCCCTTTTCGATTGTTGTTTTCATTTACTTCAAA
AGAGAAATTTGACACTGGATACTTTTAACGCCCTTCCTCCACCCTGTGTC
TTTAGTAACCTTGGTAACAATGACGCAATCGTTCGTTTCCATAACAACAA
AAATGACGTCATCCTAAAGAAGCATTTTTTCACCTTACAAAATTGTAGTG
GTATTTTTGTAGCATTGAACGTTTATAACAAGGAGATGCATTGGGCTCTC
TCTTTTGGTAAATCGCTTCAAGACGGGGGAGCTGGTCAATTTATTGCTGA
AACATTAAAACAGAACATCTATGATTTCGTGGAAAATTTTGCTTAGTGTC
TCGAGTACCTGTTACCTAGGGAAATTAAAGACAATACTTTCAGCCAGAAT
CTATTATTTGAACTTACTCAAATAAATTCTTGAATAATAATTAGTTCATA
CTTCAGATGAGAATGTTTGAATCATTTATGTACCTTCAAATAGTCATTTT
TCATACACATTTTTATTTTGAATAATATTTTTCGACGAGGTCTTCATCAG
GTTTACAAACGTTCAATTGAGATCAATGCAATGACCTCAACCTGATATGC
GAGAGCATTGGTTTCAAGAACCTAGACGTCACATACTGACCATCGTCT
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00004928TCONS_00004928Clytia hemisphaericatranscript
TCONS_00004927TCONS_00004927Clytia hemisphaericatranscript
TCONS_00004926TCONS_00004926Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00004928-proteinTCONS_00004928-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:634160..641757 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.23	0.42	0.22	0.05	7.8	8.65	134.55	148.31	39.49	47.43	43.13	16.12	2.88	2.79	0.08	0.22	0.83	0.92	5.56	4.4	2.16	2.56	9.01	10.05	5.56	6.91	56.39	91.54	0.38	0.34