XLOC_030747 (gene) - C. hemisphaerica

Overview
NameXLOC_030747
Unique NameXLOC_030747
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_142:667215..677622+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_030747 ID=XLOC_030747|Name=XLOC_030747|organism=Clytia hemisphaerica|type=gene|length=10408bp|location=Sequence derived from alignment at scaffold_142:667215..677622+ (Clytia hemisphaerica)
CGAGATGAAACTATAATTTATTTGGCATTTGTTTATGATATTAAATTTGA
TAAGACGTGAGTGTATCATAGaatatagaagaaaaaaaactactATGAAA
CCCCATCTTTGCCGATAGACACTGGCTGATTATTTCACTGGGTAACATTG
GAATGGGGAAGAAGGAGAGAtctttcgagaaaattagtttgcTCCCTGCA
AATGAAGATGACGGCCAAATAGACATTAACAATGGTAAGTGTGATATCTA
ttacacgttttcttataagaacaaactatataagaacacaaggcttggat
ggccaaaatgttaagaaccagtaaagagcattttaaggctttgaggactc
taaaacactcgaAGGCTTatcaaaatacacaaaaatactcacaaaataag
aacatgttgagaacatctttaggctttaaaactttggatgctcttataaa
aaggtAGGAAAAATTCTCTACAATTTCAGCTGTAATGGAAACTTGATTAT
TTTTCCTCTCCgataaatttaaaattcaatgtggaaaaaaattgcactcc
aaaaccatcccgcacaggatagaaattatatccccattgagatttcgaaA
GACGTTTCCATCCTCACTGTAGCAAGTAGTTTCaaggggctgtgagacag
gggtgtttgtaGATATAGGACGATATGCTTggcagtggcgtggtggcagg
gggggccaggggggccaGGCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgccaagaaggatttt
tcaggcgcccatatcgaaagattgacaaatgaaaaaacaaaaatggcgcc
cctcatcacctcaaaaactcaaaattttctggctcgctacgctcgcacac
tcccttctttgtgttcataatgagcgtatagagagAGGGgcaccaaaaac
aaaaaatctttaaaaagggcgccatttttgccttggccaccccagagaaa
ttttcccaccacgccactgatgCTTGGTATTCACTCAGGATAACCTTTCT
TGTAGGTTTCTATGAGCCCCAGTACACTGTCAATGAATGTTTGGAATATA
TTGGTTTCGGATGGTTTCAAGTGAAGTTGACTGTTGTCCTTGGCTTCAGC
TGGGTAAGATTTATTGCAGTGTTTTATATCGATGCTGCACAGTTAAACCT
CTGAAGTTTAAGTCTGGAAGGCTAGAGAAGTATTGGTTTTTTAGAGACTA
TGGAAAGTATTGGCGAGATCATTGACTAccaagcccaaagggctagactc
gagactcctggatgggaaaaatgaagcaacttaCTCCCCATTCTAAGCGC
GTGACCAGCATGGGCacacaaacgctggattgaaagtaaaaacatatcgt
cagatttcaaaaaaaaatgccacgtgaaaacaaagaaagtgctagattTT
ATCAAATCAGCTTCACTTCACTTCTTATTGCTCGAGAAAGGCTGAAGACT
TATCCCTTTCGGGGCTTTAATCTGAATGGGTGAGAATATGAGTAAAATTG
TATTGTCCGACAGTCTTCGCATCAATTGATATAAAGCGAAGGCTAATTCA
AAGATTAAAACATatgaaaaaattgacaaaattttcacaatttttagaAC
ACGGTCTAAAGCTTTAAGGATGATGAATTTTGTAATGCTTCTGAAAATAc
taattttgattggttcttaCATATTTTCAGATGGCAGACGCAATAGCGAT
CACATCCTTGGCAGTGCTGGCACCTGCATTACAATGTGATTGGAACCTCT
CTCCCGAACAAACAGCACTTATATCTACTGTAAGATTTAACGATATCGTG
CAAGCATTTCTTCGTTATTCGAACATATTTAACGATTATTAAACTTTTTA
ATGCTGTAAAAATCTCAAAGTTACTTTAATTTTAATTACTGAATGAGTTA
ACGGCTTAGTTTTCCAAATTGTAGGTGATaagtttgtttatttatgtTTA
TTGTACCAACCGAATTTGTGAATGTCTTCTTAAATTTCTCTGTTTCAGTG
TGTATTTATTGGCATGTTTTTCGGTGCCGGCTTTTGGGGATGGTTTTGTG
ATACCTTTGGAAGAAAATTGgtaaaataacatatttctTACTTACAATAT
CTGTGTTTTTTGAGATTCCATTTTGTATTCATTGAGTGAGCAGTGAGTTT
AACTTTaatttagacggcccacttttcaccctgcctattctaattgcgaA
TTAAAGTTAGCAGAAAGTTGGTCGTCTAAAGTTTAGACTTCTCtcaatct
tttccaagcaaagatctTAACTgccaaatttgtgcccactttctgcctac
tctaataATTAGAATAGGCGCAGGGCaaaaagtcggccgtctaaactaga
gtaTCAACAGCCACGTTAACCATGCTTTGTTTAGTCTTCTTTATTGTCAG
AGCGAGCGCGAGAAtgagaaattagtttgaaattttcatatttatatAGT
TTAACTCCGTAGCCTTCATATCACTTTTTCTTACAGGCATTGACATTGAG
TGCATCATTGATTCTTGTCTCCTTCCTGTGCAGTTCTTTCGCAATCAACT
ATAATTTTGTGTTGATCTTTATGATTATGGAAGGCTTTTCAGTTGCTGGT
GCTGGCCAATCGTAAGTTGGTTTGTCATAAATGTAAAGTGGAaactcttt
aattcgaacctctccTTAACTgaaacaagttttctcgtcccttttGTTAA
CAATAGCTTATAAACCTTGTTCCATATCTCGAAGATTCCTTAACTCTgac
aaatttgtgtttcccgTGTGTCGGGTATGAAGTAGCGTTTTATCTTGAGC
CGGTGTACTTCGTAGCTAACTTGAGATTGTTGAGCCATGATGAGGATATG
CATCCCTTTGAATCACCAAACTAGTTTGATATAAAATATAGGACGTATAT
TTAATTAGGCGTGCATGTTTCACCATGGAAAAATAATACCGAGGACTTGG
GGTATAATGTCTTCCTTTCTCTAAAACAGATTAATCAccactgtgtcaca
gacccggtgggacacCGTACCACTGGAAAATGTTGCTAAAATCTTGTCCC
CGTGACTTTCctccatttttgttttcatacgtttgaaattcaatggaaaa
aaattgcacattaaaaccatccccactgagcTTCCTGACCTGTTCcctat
ttctattgttttttgaaattcgaaagaaattttcatccctacCATGCGGG
AagaagtttcaccggggctgtgagacaggtgtGTGATTAAGTTGTTCTTT
GTACTTCTACGCCTTATAACAAACTTGTATTTCTTATATTCGACCCTGTG
GCTTTATAGCGGCCTGTGAATCGGAAGAAAATTTATGTATTTACAATAAG
AAGATCAAAAAGGGTTGCTAGATTCAAGCGGAATGCTTAAACAAAAGTTA
GATAGTATTCTCTTTGGTGctcatttgaaatttgaaattcccTTTCTTTT
TGGTGGAATTTTCAAGTTCgtgttttaaaatattattccatttttctaga
ttttctttGTGTTGGGTAATGTGTTATCAGGACTTGTTGCAGTCTTTGTG
ATGAATCAGCACGGATGGAGGTGGTTTGTGAGGATGACCTCTATCCCTAT
CTTCAttctcattctttttttatgggTAAGAAATAGAAAAACCATTTAAC
TTAATGAATATTATTCTACAAATGATTTTCTAAGTACAGACGAAAAACTG
TTTTGCTTTTCCTGTTCTACCTCTATAGTTATCGTAGCATGAAAGTAAAG
TATTCGACTTATATGTGTTTTGAAGGATTTGGATTTAATTCCGAGCTGGG
TTATACTAAAAAGATTTGATCAAAAAACCTTTAGCGCGCAttctaaaaag
atttgaaactcagattttaaaattattgATTATTGACTATTTTACCAATG
ATTTTCCCTTTCAGTGGTTGCCAGAATCGCCAAGATATTTGATCGGTATC
GGAAAACGAGAAGCTGCTGCCAAAGTTTTGTCGAGAATCGCTGATGAAAA
CAACACGCAACTTCCCAACGGGAAATTGAAAATACTGCCTTGTTATGTGA
GCATATAAGAAATTCgcacattttgaaatattaggaACAGCTGTAAGAAG
tgcaaaaagtgcaaaaaatgaACTAGAAGATACGTCGTCAGTAGCCTTTA
CCAAACTCGGTGGTAGAGGTGGGGCAGGCTAGTGGATCAGTATTTTAGTA
ATATTCTATAAACCTCCTTTTAGCAAAGAAAACCGAGGGGTCGTATCATC
GACTTGTTGACAATTGATCAAAGACGGACGACTATCTTGCTCTGGTTTCT
ATGGTAAGATCGGAATACATCTTGAGATAACGATAGTGAAATTAAATCTT
TGAGCTTTGTATGGTATGTGGTAAATTCAACACAtttaagaaaaatagtt
tctatACTAAACCCCAAGTTATATTAAACTTATATTTcttacattgtcca
gagttctTGTGTCATAATAAGATTGCATTCCCGCTTCGATACTTCTATTT
AAACACTGTTGTCCTTAAAATAAAACAGCCTAATAATTCTGTGATTCATT
CCACCAATCAGGTTCAGTGCAGTGTTTTGTTACTACGGTGTATTGTTGTG
TACCACCTTACttcttaaggtggtagtctaccgccagatttcaaaagtca
aaaaatcacattttttgcaataactcaagaacttctttacatttcgtaat
gaaattttcaggaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNcaggagatgttcagaaagacctaaggatct
caaaacacccaaaaaccaaaattcgacaattttttcgatgattttttatt
tttgggtagactaccaccttaacaAAAGGGAAAAATTGTGCGATAGTCAT
TCACCATTCGATGGTAAGTTCAAaactattccaaaaaaattgactcCTAA
AATTCCTCTTGGATAAAAAAGGATGCTATTAAAAATGACGCTTTGCTGGA
TAGATAATTTCCAGtttaagactttttttattaattcctctaaaattcga
aaatgaagatgaaaagataGTTTAGTGAAGGTTCAATCTCCGCCATTAGC
TTGAGCgttaaaaaaattcttccttATTGGGTTGGAATTTCCCGAACGGG
ATAGGCTTGTTTTAACAAAAACGATATTTTTTACCTTAAAATGTGTTGTT
AAAATGAATTAAGTCCCTGTCGTATTAATGTTCTATAGGCTAAATTAATT
CACGGAATTCCGTGATGAATTATAAACACATCGATGGAAAGATCTTACCC
CTATCAATACATGGTACTGTTTGTTTTTCAGGAATGAAACATTTGATTAT
CAGAAGAGGAGGTCTGCCAATGACCATAATCCCAGTCAACCACAACACAT
CATCACTGGCCACTTCCAATACCAACGTATCTATCGGTGGACATTGTCAT
AGAATGACCAGCTCTGATTATCTTGGCTTTTTGTTCACTGCTCTTGGTGA
AATTCCAGGTATGGGATGCTATTGAATCGCAAAAGAAAAGTTTCTGCACC
AAAAGTTTTGGCCTTTGAAGTACTACCAATTATACTCTATAAGTCGGCAG
CAAACGTATTAACTCCTTTTTTTTATCCATTGTGTTATAATAATAGATAT
GATAGATTTAATACAAGTGATTTAATCCACACAGGTTTGTTGTTATGTTT
TGGGTTAGCAGATCGATTAGGTCGACGTCCAGCATTGTCAGTCTTATGTT
TCGTGTCCGTTCTTGCAATGTCGTTGCTCCACGCGTGTTTGAATCGGTAa
gatataaaaaaacttttttttaatttcaaaatcacaTCACGTTAGACTGA
CTAGCGTCAGAGGTAGTGAATTGTATCACTTGCAGAGCACCCCtaatagg
cgtagcgagatatcctgcaaaatttatggatgagagcagtttttacgaca
ctgtaattactgtctttgttttatcaaaagataatcaATATGTCATAAaa
gtctgcactccctcataaattttgcagggtatagCGCTTCGCCTATGCCC
CTTATATATCTTAATGTTGTGCTTGTAAAGGGGGGACAAATTCTATCGAT
TAGCTAAAAATCAATTCACCCGAAATCTGCAGGGAATTCGAGAGGATAGT
TTTTTGCCAGTTCTGCACCCTATTAAGAGCAAAATCTTACAAATTTTCCC
GGATATAAGTGGTGACATACGATAACTTTTTTAAGACCTATTCGAATTCT
GAACgaaattttagtaatttttatTCCAATCGAGATTCGAGATTTTCGCC
TCGAGCATACCGTCACTTCACGAATCTAGTCTCACCCGGTAGATTTAACT
GAATGCTTTATTCACGACCTTCTTATTTCATCATCTACAATATTTACATT
ACATCTTCCAGATATCTACTTGTTGGCACACTTTTCATCTTGAGAGCTTT
TGTGACAGGCTTCATTCAGACCGTTTATCTTTATACACCAGAGGTAGGTA
ACACCAGTATAATTTCTTAAATTTAGTTGAAAGGCTTTGGAATTTTTTAG
AAAGGTCCACTGTGTTGAATAAACGTTGTGTATAAGCTAGATTTTGACAT
TTACACTGCAAAACGCAAGATTCATTCTCAGAGTTATTTTTTTACCAGTA
TGCGAACTTAAAAACTACCTTACCCGCTGATACGAAAATTAACGAAGGAG
TTTCAGTAGAGATCTCTCTTTCTTTACGTTCGGAATCTCATAGCGCCCAT
TCATCATctcaaagaaaatttctttgctGAATATTGTAAAAATGCTGAGA
ATTCTCTTTAATCTGAAGGGAAAGACCAGTATTTGCTGActcaaaaaatt
gaatcaaagcaaaatttaaattttcgtttTAAAATACCTTGTAATTTAAA
AACGCTGATCTCTGCGAAACCAAATCCGGAAGATTTTAGAAATTAAATCT
CGCGGAAATTAACCCGATTAAAGTTTTGAAGAGTTCCAGTTGATCGTAAA
GAAATCTACTAAAATTCTCTAAATGGATCAGCAAGGCTGTTCAAGTTAGA
ATATTTTCACATCTATTTGACATTTTCAGGTTTACCCGACGAACATTCGT
GCAATAGGTTTTGGAACAGCAAGTTCAATGGCCAGGATAGGAGCCATCAT
TACTCCCTTTGTGTCCGAGGTAAAACCAATTGTCCTATAAAGTAgtgatg
aaaatttcaattgtgTGACTTTTAAAATTTCTGTTTAACTTCGTTCAAAA
TTTTTACACTTGGAAGCACGCTTTGTAAATGATCTCAGAGTGTCTCGTTT
CCTAGAGCAATAGATTGAgaaaatagaatcttttgtttgaAGAGAAATCT
TATACCAGGTATTAAAAACCTCATTTAATTCAAGGATTATCGAAAAAagt
caatttaatttttttgacagaGTATTCAAACACAGCTACCTATCTTTGGA
GAATTATTTTATAGGGCAGATATCCGCTACCTCCTCATAGCTATGGGTCC
atagttttatttttcttctatcTTTAAGGTTTTGTTGGATACATACCCTC
ACCACGCTATCTTCATTTACTCTGGGTTAATGGCTGTCTGCATTTTCGCC
TCCTTGCTTCTCCCCATTGAAACCAAGGGGATGAAACTGAAGGTGAGCTT
CCGCCTACTTTGCATTGTATTGTTAGGTGGGGNGGGATGAAACTGAAGGT
GAAACTCTTGTATATTGTAATGTATTGTTAGGTGGGCATTTCTATCATTG
ATAATCAtacgttcttttataagaaaaatctatataagaacatatgcCCA
ACATATGTCTTTGAAGGTCAAAATATAAAGAACAAGCTAGGAGCACTTTT
AAGGCTctatggactctaaaacacccaatttcttgaAAGTTACACAAAAT
TCTCACAAAAAGGCGAAAAACAAGAACTAGTTAGGAACATtattaagctt
aaaactcacaAAGTTATGAGCATCTGAAGGCTTTCAAAATACTGGATGCT
CTAGATAGTCGAATAGATTGATGATTAGAGCCTTGAAGTATTTCCTTCCT
TCCTAACCAACTTTACTTTCTTACTTGCTCAAAGATTTTCCACATACTAT
CAATCAATGCTGATCGAGCGCGTGAGATAGTCGATTAAATTGATGATTGA
GCCTTGAAATGTTTCCTTCCTTACTAATTTGTAGTTGCTTTTCCTTGCTC
AAATCAATATCGACTGTGGAGATATGCTTCACGCATACTGTCAATCAATG
CTGATCGAATGTAAGCAAAACGGCTCCTTATCGTTGTTTCCCCTGATGAT
TgaaagtattttcttttttctcccaGGAGTTTGAAGAGGAGAGCGAACCG
AACGATAATGGGTGATGGAAGAAAGAGCAAAGGCGAAATAACTTATCGAT
GAATGTAGAGGGTAGATGCGATAGAGGAAGGGACCTAAACTTCGATGCCC
TTTGAATTTtcataaatgttgaaaaataacctTTTATTAAACGGTGTCAA
ATTGTGATTTCAATACGATTCGATTTTCCGCaggtttgaaataaaaatgg
acAAGGAGAAAGTGACGCTTGCAAAAAGTTTATTTATTGTTGAATGGGGA
AGAAAACTATTAATTAAAATTACACGATATAATGAGATTTGTGCTGATGT
TTCCTTTGAATCAATCCGGGAAGTTTAATCCTTGATATTGATCACTGAAA
TATATATGTCAATTTATGTCTAGGAAATGAGTGAAATGATGATGAAATAT
AAAGAcatctttataaaaaaagcttggATAGGCTAATTTACAGACCCCTC
CCCCAACG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00048305TCONS_00048305Clytia hemisphaericatranscript
TCONS_00048306TCONS_00048306Clytia hemisphaericatranscript
TCONS_00048307TCONS_00048307Clytia hemisphaericatranscript
TCONS_00048308TCONS_00048308Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00048306-proteinTCONS_00048306-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:667215..677622 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.04	0.14	0	0	1.07	0.77	4.27	4.76	3.82	3.14	4.77	3.95	6.96	3.87	3.65	9.54	8.81	9.45	0.62	0.52	5.4	5.72	4.34	2.86	3.67	4.46	0.96	0.55	0.75	0.97