XLOC_031547 (gene) - C. hemisphaerica

Overview
NameXLOC_031547
Unique NameXLOC_031547
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_166:112421..122738+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031547 ID=XLOC_031547|Name=XLOC_031547|organism=Clytia hemisphaerica|type=gene|length=10318bp|location=Sequence derived from alignment at scaffold_166:112421..122738+ (Clytia hemisphaerica)
GAGAAGTACagagaaaatttaaaacaagcTTCAAAGAAGTCAACAAAGAG
AAAAAGGCAATACCCTTAATTTCACCTTATATTCTTCGAAACTATTTTCT
TGAAACTAAACTATACTTTTTTCTGGAGATTAAATCGTTACTAGGTTTCT
AGGAGGATTGTTATTATAACAAAACAAGAATATCTTCAACCACAAGGATC
AGGACACACCGGACAAGGAGGCTGAATCACAAATTACCGGAAAGCTTTGT
AAAAGAAACTTGACAGCGAAATCATTGAATGTAGGTATATTTCATAATAC
TTTTTCGAAAGCAGGCTACCCATAGTAAGCTAGGTCTTGTGTTATTGTAA
GTCAAACACATAGAACATTTTATTGATTTCGACTCCTAGCACAGCTAGAA
CCTAGTTTAGTTGCTCAGATATGACACACTCCCTTTTTCAACATCTATTA
AATTTTATATCGTATCATATAGACGTTTTCAATGTGTTTTTTCAAACTTG
TATCCAATTCCTTAGCTCACTTGTTGTTCTGATTCTGATAGCGTTCACGA
AAGGTTGTACGAACGTCcaccatcagtaaaatcaaaaaattgtgcATAGG
GCATTGGGTACGAGattgttgttttgtttgttgCCCACCCGGCTGAAGAA
GAATGTCTATTCCTCAGAAATATGTCGAAGTTTGAGATAAGCGTTGTGCT
TTATGACCCAATGACCTTTTaagcttttaaactttttggaCCCACTCATT
CTTGGTGTTATTTatgatacagtggagtctctttaactcaaacctcttta
atttttctaatcCCTTTCACTTAACAATGCCTATATAAACCTTACTGtcc
gtgttcgagttatagagactccaatTTATATCTATGAATTCAACTAACTA
TTGGTATTCAGCTCTTATATCTCCTAGCTATTTCATCAAAGTGGTTGAAC
CAAATGTCTACTATGTCTGTGCCAAAAAAATTGGCAGTCTGCacattttg
atatatttctcTTGAAGGATAACctggttgaaaagataatcttaAGTGGA
TGATTTTTAAGAcctcaaaatttcgaaaatgaaaaaaaaaatttctactc
cacctaaagttttgaatttattcttttctaaaaagtttgttgatttcaaa
taaaaaagttttctggATTTTTAATATCTTTCTTGGAGAAAAATAACATG
CgttaatttgattttgatttcattcaTTGAAGTGAAGTTGATTTTCTCCT
TCccaagaatatttttcactttttatgtGATCTTCTATGATTTCCTGTGG
CGAAAAAGTTGATAATTGGAAATTTGAACATTaaactatttttgaaactt
ATATTGGCCAATTCTTACCCTAAGAACCTTATCAAAAAACAGGGAACTTG
ATAACTTAATTAGCTCTTTCACATCTTCACGCAATTTGATATATAATCAT
ACAGTCGTAAAGACCAATTGTTTTCACCTTAGTCTGGCTGAAGTTGTTAA
ATTTTacctttgaaattttctgagaATTTAGTCTAAATTTACCTTACCCT
AAAATttgttttcttatgaaaaaggtGAAATTTTAACATAGTAATTATCG
CTGTTCTTCTATTCTTAATATATTCGGTAAATATTCTCTCTCACTACAAA
Ctcatcaagatttttttaatttattttttcccattcttttttttttctta
aaatttgtttttctatacACATGGaaacagttatattttttagAGTTCCG
CTATAGGGTCTTATTTCGGAGACTTTTGGGACCTTTTTTGACTTATTGGA
AAAATGACAAGAGTATAAaagattttgactttaaaatatGATGTATAAAC
GCAAAAGGTTGTGGCAAAATTATGGTAAAAGAGTCTCTTTCATAAGCACA
CTTGCTCAATCCAAGCTGACcctccaaaatcttttttttcttggcCCGGA
AACCTGGCGACGAAAAGCCGTTTGCTGCATCGAATCTTTCATGATAGCGA
TGGCTCTAGCAACGGATTTGGTCGCCAAGAAAAACCTAGCACCGTTTTCT
GTGCTCGTATTTTGATTGGCGTATAATTCTTCTGAAAGCCATTACTCCCA
CCAACAgtttaatagaaaaaaaactcaaaaccGGATTTTCCTTGGTGGAa
agaaatgctgaaaaaaatattgggaACTTGTTATCTTTGGTTTTGTCCTT
CTTTGGACTTACTTGCTTCCTTATCatataggtttttgagaattcaatat
gaaaaatttgaggaaaaattaattttgtggTTTCTTGActattattcaaa
atattttcaatgttattCTTCAATTAGTAGATCGTTCGATGGCTTCGAGA
ACAGTTCACCCACCTCGGAGTGGGCGGCCAACAAGTAATGGAAACGCCTC
AGATCGCCTCCCACCACCCAATCAACCGAGGCGTCCACCACCGCAAAATC
AAGTAGCAAGAACAGGTGGAAACTTTGCTATAGATGAAATTATCTCCAAC
CAAGGTGAGCCATCGGTCTGATTACCACAGAAATCTATTCATACGCAAGG
gcactttttaaaattaaattaagtttcttcaattttccaatttctttcaa
tttaaaTACCGTATTCCGTCATTCAAAACTCAAAGTCAATTCTTGTAAAT
TCCATAACAAAACAGCTAAGGTAATACAACTATGGACACTTTTTGCAAAG
AAGAAagtttactactattgaaagaGGCGATCCCTAGCTCGGCAATCCAA
TTAAGAACTCAGCTCTcgcgtttttataaaaaaaaccttaaTAGGAGCTT
CGTGTTCAGTCTTTCCTTTAATTTTTACGAGTTTTTGATAGATAGCTTAT
CTTCTGTCTTTGATTCTCAATAGCGTTTTTTCGATTACAGGCTCATTACG
GCGTGACGTGTTACGTCATGACGAATCAGTACAAGCCGTACGTCAAGAAA
ATATCATGTTAGCTGAAAAAGTTCAACACGCGACTAACTTGTATCGGCAG
CTATTaagtaagttttttattttaggtAGAAACCTTTGTAAAAAAGTAGT
CTTTTTAACAAGATACCGGGAAAGTCTTATTCGacacacgggttgcaaaa
ttacatcagtgcagtcaaaacatgtgattactcgaaaaagttcacgtgat
tttgttacttgctttacaacttacagctaataactttattagtgtcaaca
tgtgtcaataaattcgaaccaatcagaaataaatgtcatgtaactagcac
ataaaaatttcgagtaaaagcgtgacttgtcttcagactttagaattttt
tcaacctgtgtatttgttaaaaaaaaccACACGCGAACATTATCCAAAAC
AATCTACCTGAATTTAATTAACAGAATAGTAGTACACAAAGGGAACTAAC
CACCGATTTCTTGGAAACCGTTGTTGAAATGCTATTCCGGAAAAACGTCA
AccaaaattgaaccatgctacCTCTATGTTGAGCGCTCTAGCAAATTTTG
TATGGGTTGCTGCGTTCTCAAGTCAAAAAGGAGCACGATAAAATATACCC
CTTCCTTTCGAACGACCGCAAAGCTGAAACAATTGAATATTTTCCATTTA
GCAGATTTGTGTAGCAAAGTAACGAATAAACGTCCAGTAAAGCTTTGATT
GGTTGAGACATGCAAAGATTACTGCATACTTTAgacatttggaaaaaaat
atgtttatgtaaacatttttaagccaatcagagctttactcgacgttttt
tcatgacttttttacataaatctgctaataggaaatttgtgtattgaaca
tttttttaatcttcAGATCGCGTTGGTAAGAACGAAGAACGAATGGAGAT
GGAGAACAAAAGTATGTCAAATATTTTATCACAGGCTAAACAAGTGGAAA
CGCAGCTAGTCAACCAACAAGAACGATTGAGCGCAAAAGAAACGCAACTT
CATATGCAAGTACAGAAACTTCAAGACGAGGTACATTTTGAAGTCACAAT
TTTTTGTTcacatttgttgttgttttttcataatttattcCATTTACTTA
TATATTTACAACGGTCCATCTAGTGTTATGAATATGGCCTATAATGTCTT
TTAGAGTGTCCACATTAAAGTAATCTAATCTATTACATGAGTTACGTGAG
TTCGACCCTCCGCCGTGTCAtcacaaagattttttaaagggTACATGATA
CCTCTAAAGAAGTCTAAAGGCAAGTGAGAGATTCAAGCGAAGTAGTGAAA
CCCCTTATCATTTAACATGGAGATATGAGGGTAGACATTCAAGGAAAAGA
CGTTTTTGTGTCACTCAAATCATTACGTCATTACGCTATTTCACGGTGTT
CATGACCACttcaatgtcttctgacattacatcacggacccaattgCTGA
TGGGTTGTAAgcgacgtaaaatcagtcaatacatcacttgcaaccaatca
gccgTTGGGTctttggaagacattgcaatggtgcgtATCATGAATACTCA
TTTTCTATCCAATCATTTTTAGATGTCAATATTAAAAGTTGAGCGTGAAC
AAATGAAGAAAAGTAACAATTCCATGACAGCTGAGCTACGACAACTTCAA
GAAAAATTGACAAGACAAAGTGGTGCGCTAAGTACAGGTCTCTCTGATCT
CAAATCACATCTTGATCAAAAAGATCTCGAAAAACATCAATCGGTAAGGA
CAATTGACTTTACTACTTTGGGGGAAAGCAAATCAATCACATAGCATCAA
TACATATttgtctttttataagcaaccaaaAATTCTTTTCCCGATTTTTT
TTACAATGTCGTAAAATAAAAGCTATTTAGATAATCTAACTATTGCAAAC
GGTAGTCTTCGACCCAGTAAGCGTAAATATGGTATAAAATCAGGGGTGGT
TAATGcagattttttttagaaaaagggcTCGAATGCTTAGCAACCCTGCA
TACAgtcctgacccgaaaattggagttgcttataaaaaatatgaaattag
tGAAGGCTTGtgttaataaaaaaattgttaaatgtAGAAAATCTttatag
aaaatctttttgccGTACCATAAGTTTGACttgtttcttaaattttcagg
tGACAATGATGTTCAATGAATTGCGAGAGAAAGTGGAAAACCAGGAGCAT
AACATGGCTCTATTTCAAACACAACTCGAGGGAAAGTAAGTACTGTTATC
TTTTAACAATAGAAAGctcgggggagggggtacttggggaaaatgggtgt
cgggtatgtcgagcaataagggtcccttttagaccctcaaaagtctctca
aagggttgcAAAAACATTAAATTAGCAATGTGTCTCAGCAAAAGAGTCTC
TGAAAGGGTAAAATATCAAATATTAAATACTAAAATCTggtaattttggc
gaaaaaactttggaaaatagtcTTATAAAGGGTCGCAAACAcgtcgaaat
tcagtctctcgaAGGGTCAATTTTACGACACAAGCGGTCAAAACCTAAAA
TGGGAAAATACGAATTAGAAGAAAAGTCTCAAAAGTAAATCTTTTATTAC
TTGTTTTCCTTTAGAGTCGAAACGATAAAACTGAAAGGCAACCAGtatga
aaaacaacaacaagatGATGTCTACAGAATCAATACACTTATTCGCGAAA
AGGAGGCTCTCGCAAAAGCAGATGTTCGTAAATTACAAGAAAGTTTTCGC
gatgtttttgaagaatttagTCGAAGTTTAGCGCAACGTGATTCGAAAAC
GAGGAATGATGTGGATAGCAGAATTGAATATTTGGAAAAGgtaaagatat
atctttttgaTAATGTGAGAGTAACATTTTAAATCTTTGGTTTTCCCAGC
TTGCACATAACggtgtttcaacgtttatctaacgttcgcAGCGTCCatgt
aacgttagatgaattttgaaacaacgttgtgtgtcaggtTGATTGGGCTA
TTAAGTTTTAACCCAAGACCCGAGAAAGGAATCTCTTGGATgtgaaatga
agccacttatctCCCAAAGTGAAACGAGTGGTCCGTGTGGTTAACAGATA
ATTgttggattgaaagtaaaatctgcTGCAAGATTTCGGACAATGTGCCG
TGCGAAAACTAAAAAAGCACTGGATTTAATCCTCAAATTCAAACTCAAAT
CTTTGAAACATTACTTCtctcatttttagaaaatcaacGGTGATTCTAAA
GCGTTGGACAAGAAATTTCGTGAACTGGAAAGCGATGCTTCAGACAGTat
acaaaatatgaaaaatgaattacTGGAGAAAATGGAACAACTTAACACAT
CAAATGTAAGAGCATAATTGTGCCAACCGAACTCGATCCCAGGCcctttg
ttcgtttttttttatgattttgatagcGCTTGCGAAAGGTCTTATCCATT
GATAAGATCGGAAATGTTGTGCAAgcggctctgggtacgagattgtgTGC
TAACACGTATATGTCTGCGCATTGACTTCAGTTTGATAAGCGAAAGACTT
AGCTGGTAGCCAgtgccttcccacaaaccaaattttttctttgttaaatc
gcgataaaaaagtggttttcgtctaacaggcaaCTTAGCCGGGGACTGGA
GTAAGATTCGAACTCACGAATTTCACATTACTAGTGCAACTGCTTCCACC
GGTGATacatttgtttacatttttgagcaatttttcctttttcttacCAC
AGCCGTTGAAGGAGAAGCAACAAGTGCAAGAAGATGAAGGTGtcaaacaa
caaatcaaattaatggaaaaacaaatcaaacaaaataaacaagacaTCGA
GAAAGTCACAAGGGCCGAAATTCAATCCAGGTAATTAACATTTATCGAAA
ATAATGTTCAAAactacacgttttctttttataagaacaaactataaaag
aacataaggcttcgatggctaaaatattaagaatatgttaagaacatttt
aaggcttcgtggactcTGAAATGGcctttttcttaagaaaatggttaaaa
atgatcacaaaatggtgaaaataagagcatgttaagaacatttttaggct
taaaactcaaaaagttaagaacatccaaaaattttaaagccttaggatgt
tcttaactttttgagttttaagcctaaaaatgtaaataaaaaacaGTATA
AATCCTTGCATTAAAAGCAGTATTAAAGAGATTGAGCACGAGTTTATCAG
GGTTGAATGACATCAATCATCTCTAGTTTTTGGATTGGCCAATTGCATTT
TGACTAAAGTTCTAAAgtgaagttttttttcttcgctCTCAAATAGTTCC
AGGGATTCTGAATTTTTGTGCTCCTTCTagagttttgataaaattcataa
ctgaaaagaaaaaaaaaatatatatctaaTATTTGGCGTTCCGGGACTGC
CTCCGTGGAAAACTAGTGTAGTATTATCTATAACGTAATATTTGGTGTGT
CAAGATTGCCTCCGTGCGATATCTCATTAGTTTTTCGAGGACTAAATAAC
AACAATCTAAAATAGAACCCAATCAATGCGGATATATATATTTAGGCGAT
TCCTTTAATGTTGTTCaaattaatcaaaatatttgaaagagtAGCGATTA
AGTCATCAAAGTTTACATTCAAACCAGGTCTTCTTGATGCTCACTGCCGT
CGAACAACATCTCTGTCGTCCATGACATCTAGAACAATATTGCAAGTGGG
CActgttgggggggggggcagagaGAGCCAGTTCCTATGTCTCTGACACT
TTTAAATTCAATCCATCTATCCCACTTTATaattcaatattaaaaagctC
ATTCGTATAGCTGACCAAAAACACTACTTTTCCTCTCTTTCAACTCCTGA
TTCTTACTTATCAAAATTTCACAGGATATCACAAGGCGATAAATTATCCC
GACAAATTACCGACATGCAGAAGGACCATAACGAAGCACTGACATTGATT
CAAGATACTTTGGGTGATCATAAACGAAGAAATCTACAATCCATTGAAGA
GGTATACTTTGAGTCTGTTAAATGACACGCCTTACGTGCCCACGCACTTT
AGAGTTTTGACGCACCCTACGCGCCTTAAATTTGACGCACCTTCGAGTTT
GTACGCGCCTCTTGCGACTTAAATTTCAACAAACATTCCATTTCAACAGA
CTCGTaaactttgatgaattttacAATGGTGCCCAtagtatgaacccccc
cccccttttttaaggggggggggtccgagttttcaaggaaggctttatag
ggggggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNatcaaaaaattttaaaaataggggggatacctttatagggggggatg
aaatattaatggggggggttcagacccctctgcacactatgggtGCCACA
CAATGTTTTGGTCTCCAATATTTACCGAAAATGACATTTGTTGAAGCTTA
GAAACACCTGTCTCACAGTCCCTGTGAAAAGTTTTCCCACAGTGGTAGAG
ATAAAAAACTTTTGGTGTTTGGAGTGCAATGTTTtccattgaaatttcaa
ataggATGAAATCAGTTAACTTTCTATGTGATGAAATGTAGGGTATTCTT
CCCACCGGGTACGAAGTTTTGGCCATATTTTCCAgcggggctggggtccc
agcgggtctgcgACACAGAAGGTGTTTAGGGAACATTGAAATAATGTTTT
CTGCTAGTTGCTGATTTTATTTCTATGATATCTTCTAATTTGCCTGTCAA
ATCTAGCGTATTGGGCTTGTTTTTCTACAGTGCCTATATAGTTGGGCTGC
CGACTTCCACAATGTATTAGTGGTAAAATAAGATGTATGGGATTCAGACT
ACTAAATATTTAAAAGTCCAGATATAACCAAAAATTCAATTTCGATTAAA
TCAAATTCAACGCAAAAAGATCTGGttgtaaagaaatttaaattataaTA
AACTCTCGCTGaatcgaacttctattattcgaatatttctataacCAGGC
ATGTCCccatcaaggagaaaccctcttaacatttctatttctatagTTCG
TATATCTCTATAaatcgaacaaataagatttctTGTTCGAGTtagaatta
gcgagagtcaactgtattatcATTACTATCTTTAGACACGTCGTGATTTA
TTGAAAATCCTTAACGATCGTACGCAAGACGACAACGCTGCTGACATCAA
GAAAATCGAAACACTCGAACATAAAATCGAAGAAATCGAGGATGCACTCG
ATGAATTCGCGAAACAGGTATTTTTCAAACCCCTTCTTCACAGAAGACAT
AGCCCACTACTACAATGTTGGCAATAATATTTTGGCATTAAGAGAATTTC
TcagcaaattaaaaaaaaaccgcaAGTAGGTTTTAAGTGCCTTAACTTAG
GGTTGGAAACATCAGAAATCCCAAAATTCTGACCGCCATTGTATCGTTTT
TACTAACTTCTAAAGCCAAGACTTGGAtagaaatttgtattttattctaT
GAACCGGTTAAAATCCGCTAGACTACCCTCCTGAACTTTTTAAGCACAAT
AACGCAAATTGGGGAACTAGCTGCGACGTCACTTTTTAATGGACATTGCT
TATGGGGGTATCCACTCcagtttttattttaaagtttttggttAAATTTC
TTCATGTATTTTCATAGGATGACCGTATCGAGATGAACAGTGAGCGAGTG
AAACAGATCGAAATGGAAAACATTTTATCACAAGGTGATTTACAAGCACT
CATTGAGAATTGTAATAAACAAATCACCAAATCCGACCAAGTTTGGAAAG
ACAAATTAGAAGAGGTAG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049744TCONS_00049744Clytia hemisphaericatranscript
TCONS_00049745TCONS_00049745Clytia hemisphaericatranscript
TCONS_00049746TCONS_00049746Clytia hemisphaericatranscript
TCONS_00049747TCONS_00049747Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049746-proteinTCONS_00049746-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:112421..122738 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36	0.33	0.25	0.18	0.72	0.54	2.9	3.39	2.48	2.87	2.85	2.93	4.89	5.25	2.25	2.3	2.42	1.88	9.71	11.08	2.39	1.72	1.13	2.04	4.27	5.98	1.03	0.82	0.68	0.47