XLOC_031553 (gene) - C. hemisphaerica

Overview
NameXLOC_031553
Unique NameXLOC_031553
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_166:241441..249775+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_031553 ID=XLOC_031553|Name=XLOC_031553|organism=Clytia hemisphaerica|type=gene|length=8335bp|location=Sequence derived from alignment at scaffold_166:241441..249775+ (Clytia hemisphaerica)
TTGCCGTAATAGTACGATTTATAGCGAGTAGCGAGTGCCTATCAATTTAC
CGTAGTACTTAAGTTCTTACcgacttttctttttatagaaCTGTAGCTTT
CTAGACGAGACATGGCTTTTACCAGTAAGTAATCTCTATTCTTTATTAAT
CACTACGCATGCGCAATTTCTTAATAATACGGGGGGGGGTAAACGTGCCA
TGAGAGAATAAGAGAATTCTTGGCGAGTTTTTTAAAGTGAATCAAAGAAG
CATTTGATTGTCGTTTCTTACAATCTCAGGTTGATTTTAATGCGGCCTTA
GGTTTTTTTGGGTTGAATTTTCGATTTACcttaaattttggcgaattcgc
TGGATTTcggtagactggagtcgtttattaTAATGCGTCTAactacagta
gtataggcgttatatgataatacgattattgttacgggatttagccaaaa
taatttatgaatcaaagttttcatgattttccaaaataatcCATATTTTT
TGTCTAAAATCCTCATTCTGTGGCAAAAAAGTAACAATTTACCCTTACAT
ACGTAAATATTAGTTCTcctcaaaattaaaattttgcgtTACTAACCAAG
ATAAGTTCTCTCTGTAATCAGTACTCTAAAAAGTAGAAATGTCGCTTATA
GGGACAGCTTTTTAATTTAGTATATATATTAACactttcttatcctcttt
tagcgtgtggaaaaatttgaatttgtccCTTGTGCACTGCTTGGATTGAC
TTTGGTGTAAGTAAATTGTACGGCGTGAAAGACTTAGTCGGgatattttt
tcaacatttcctCAAAATACGGAAGTTACAGCCCTGCTGAACTAGACTcg
atgaaattattttgaaattattaacaatcctaatttttttttctcgataa
gGTATTGCCAGCTGGTATAATTCGTTAAAATAGCGTCAATCTAACATCCA
TATGGCGCTTAATAGACATCCAAACAAAGTTTCATCCTATTATTACTTAC
TTTCTGATTTGTATAGTTCCGTAGACGGGAAGTCAATTATCACACAAGTC
AAATCAGGGAGCGTTGCAGAAGAGGTActtgtatttttcttttcttcatt
tcGCTCCCCTTTTTCTCCAACGGGTAGACATATATCGAAAAAAGAGGACT
TCAGTTCGCCCGCGTTAACTGGGAATACACAAATTTCCTATTAGCAAATT
CATATTGAAAAGgcacgaaaaaacgtcgagtaaagctctgattggctgag
acaTGCAAAGATTGCCTTATACtatggacattttgaaaaagatatgTGTG
CAATATTCAGCCAATCGgagctttactcgacgttttttcgtggctttttt
acatgaatctgctaGTAGGAAATACGTGTATTGTCTCAAAACTAACtata
tttttatcgtttttttatAGCATGAAATCGAACCGGGTGATTGTTTAGAC
GAACTTTTCGGACAATATATAGACGAGAAATGGTGTTTAAAAGTCGGAca
gttgaagaaaaaatatcaagGGAAACCAATTACAGCTTGTGTTATAAAAG
TAAGTGTGTTTTTGACGAATTCATTGTATATTTCTTACCATCTGACATTT
AAGATCAGCTTTTGCAAAGAAAACTCGAGTTTAAACCTATTGAGTGCCAC
TTGCAGAATAAAAGACCGTTGGATTTTTTTGATCCTGTATCGGTAGGTCT
GAACCTAGCAGCGCCGCCAACCCAAGCCTCCCCTTTTTACCCCGTCCGAA
CAAAGTAGAGATCGGCGTTTTTTTCCTAGTttggtagactggagtcgttc
ataatgcgtgtaatacaatagtataggcgttatacgATGGGATAATATGA
TTATTGTTTCGGGattttgttccctccattactttttgctttaagCTTGC
TAGACTACTAATTCGGGTGTATACGCAAATTtgcaatcaaaaatatttga
acatTTAAAGTGTTGGTATTTAAAGGTGGACGGTGtacgttttctaattt
tttccatCATTTATATCATGTAGGCGCGTTATAAAGATGGGCGTTGGTTT
CCACCCTTATACAAACGTTACCAAGTGCTCTGCGCTGAAGGGCGTTGCTC
CATGACCGCCACTGAATTTCAACAAAGGAAAAGCGAATCTCACGAAACTG
ACAGTGAAAAAGTGTAAGTTAATCCTGGTTAATCGCTTACTACATAGATT
TTAGGGGAATTGACGAAATTTGTATAGTAGTGAAGGTTAGAATGTTTTTT
CCGTCTCATTTCAtaatcattttcataaattacgtcgcAAACCTTGTCTT
GAAACGATCACTTTCAAAGCTTAATTCGTTTGTCAACTGGAAAAAAAGTA
TGCAGCTATATAGAGCTTCGTCTtttctgtacacagacccgatatctacg
gctaatttcaaaattcattgccgtactacgaagcgataaacgtgatatac
actctggtacagagtaagcTTCGTCAAGAGTGAGTTGAGTCATCACTGAT
CTCTAAATAGTTGACTGGGATTTCCATATGATAGGAAGTGTGTCACtgac
taaagtctattcacgataagtgtgcactcttttttcatttacctataact
tttgaagaaattcttcaattttcataaatttggtatcattggaaagatgt
tagtgagtggaacaatttgaaattaaaaaatctttaaaaaaattctaaaa
atgaagatgaaaataaagaagaaaaaaatgaagatcttgtagaaaggtga
tatgactttcattttcactgaagtggcTCCTTGATTNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaatat
ctctccaacgataccaaatttataaagattgaagaattccttcaaaagtt
ataggtgaaagaaaaaagagtgcacacttatcgtgaatagactttagtct
gtcactttttattctatttaaatgttttgaaattcgaacgttcgaaaatc
tacCATAAAACAGAAAAACAACATGGCGGACTAGTCGACCATAAAACTGG
ACACGCTTTCACGGAAAATATGTTAGCAGTTATAATAGCCTATCTAGTCT
GTAAAGGATCATAATATCTTTGTTCATCATAGCGGAACTTCGAAAACGAA
GCATGAGTTGTTACCTAGCGTAATTTACCAAAAGCCCTTGATTCTCTTCG
AAGCAGCTTTCGAAAGCATACTTGAAAACTTTCTCCCGTTTCATTCTTTT
TACGAAACTTGTATAATCAACTTATGTATTTTCTTTATGGTGAATCTGTT
ATAAACAATcgaattgtttttcatttttagaacatCGCAACATACATTCA
CAATAGACTATTTAGGTTTTCATAATGTTGGAGAAGTAAGAGTCTTTAGT
TTCCTTTACATTTTGAATTTATAGCTGTCAttgtttcaatttcaaatata
cgaatttcctattagcagattcatgtaaaaagaGTCACGAAAAAATGTCG
AGGAAAGCTATGATTAGCTTAAAAATGCTtacataaatatatttttatga
aaatgtccagaggtaatctttgcatgtctcagccaatcagagctttactc
gacgtttaTTCGTGACTTTGTTGCATGAATCTGCTTATAGGAAAATCATG
TGTTGCAAGTAGCTATTCTAGAATATTGAATAGGCTTTTGAAATACTTGA
AGAAATCTCTATATCCTTTACATCAAAGACATCTATTCCAGACTGGTTCT
GtagtcaaaaaattttggaatgTAAAGTCATTTGAAGATTATAATGAACT
ATTATGATAAATCTTCTCCTTGAAAGTATACCAATATCTTTCTGACAATT
CCATTCTCTTTCTATATCATCACATAGAATGGTAGCTGTATTTACGTTCA
AGACGGCATCGATAATGTTCTCAAAGCTGACAACCAGAAGGTTTGATCTC
TTACGAAGAAGATATAGATTTAAGAAAAAGTTTACATTGCAGCGGTCTTT
ACGAGGAAGAGTTGCTTCGGTTTTAAGAAAATGCTCATTTAGTCGAGGTT
GATTCAAAGAACGTATAGGTAATAGATTAGGAATTACAATTAGAGAGAGG
TTTAAATTTAGCTGTTCTTTGTAAGTAAATCCATGAGCGTTCTCTGTCAT
ACAATTTGACCCTGCAAATTTATCATTATAATTGTTTTTGTATATGAATA
TTTCTAGTTAAAAATAGATAGCTGTGTACTAAGGGTTAGTTCATTTAGAA
ATATGCTTAAAAATGTGCTCAATTTGTTAGAAGTTTCTTGTAATTTGTGG
TATACAATACATTGCTCATGTTATAAGCTTTGCACGGTATActgtggggg
ggggggcgtacagtttttcggaattgcggaaatcgacccttttttcttcg
gaatttctgAATTCAGGCAAAACTCCTTCGGTATtttggaattctgaaat
tgtttcggtatcggaaatccatgaatttttgcttcgaaatttcggtatta
taaagtttttatccccttttttcggaattcatacatggaaaatcaaaatt
gatgaaaaattagtccaaatgaggaaaaatacccaaaaaaatcggtatca
gaattgcaagtatttttttacggaatttcggaaattttggcaaaattatt
cgctATTTCGGAAATCACAAACCCCGTACGCTCCCCCTATACTTGGCTTT
TATAAAACGTATGACAGGACAacactttcaaatattttaggtattcagtt
gtttttttttcgagtttCCAGCAAAGCTTTGCACTCGTGGATGCGTGTCT
TGCGAAGTTATGTTATTTCAGAACAAGTCACAAGTTTTACAAAGAAAAGT
TACAGATTTTTTTAGAACTTGAAAGGTATGTTAGTTAGTTATCGGCCTCC
CCCACCTACGTACTAGGGACATTACCACAGAAATCGTCCCCGATAGAAAA
AATACCCCGGATATCATTTCCAAAGCTTAAGTCTCGTCCCTATTTAGAGT
AACACTGAAACATTGAGAATTTTCACTGGATTTCTGGGCTATTTAACAAT
AAAATCTCCACCTAAGCAATAAACTTTCGATCACCATTTGCAGTCGCCtc
ctttttcatttcatcactGGCTGATTGAAGAATTTTCATCGGTTCACTAA
GCTAGGgatgtttttaaaatgatttcaatttgcccaaattcttttatatt
tttccaaacagatttgtaaattatttttcctGCTTTCCAAATCTAACCTT
CCTCTGATTTTATTAGGACCCCTCGTTTATTTATGAACATGGTTTATTAG
AATTTGTAAAATTTCCAGTCTCCCCCTCCCTTTTACTGGGTACTGGAGAG
TACCACCTTCCTTTTTTCATATTCTAGAGAACAGTGAAGATGCAATTGCT
GGAAAGAGATATACTGGTCATGTTTTCCGACACTGGAGAGGTATCAATCT
AATGAATTAATTATCTTGTGTTTTTAATCTTACCAGAATTTACATCAAcc
ctagcctagaaatctaagccagattgattcagtcactaggataaatctga
tggtaagttgtgactgaatatctgAATATCagtttttcaaggcaaactta
aaattcccTACATCATAAAATTCATTAAAGCGCCGATTACGCTATATTAC
CGTCAGCCTTATCTTGaccttgtaaaaactggcttggttaaccaggctaC
ATCAATCCAAGCTTCAAAAGAAAACACACCCTTCCTTCGTCTTCGAGACT
GGAATTGACAGTGCTATTTGAATTTTATCTGTAATAATCTTTTCTTTCAA
GTAAGTCAAAAAGTCGATTGCGGATAATGCGTCTTATCTTAAGATACCTT
Gctacacaaatattactaggcaagtatttaacggccttgaaatttgcacg
atctgaaattaacacaGATTTTTCTGCTTTCTCAAGGAAActggctggtt
ttaattaagggggtttttattaacacgaaatttttcaattctagtaatat
ttgtgtaataaggtactttgaaaattgtttgaactGGAAACTGTAACAGg
attttttgtttaatgttGATAAGTCTCGATGTAGCTTTTTTTACCTCTTT
TAGGTGCTAGGTCGTTTCTCGTATACGGAGACTTCTTCGTGCGGTATCAA
AGATGATCAAACCAACATATTTGGTTTCATAGCTGGGTAGGttaattttt
tatttcctgCACAGCCGGCTTTCTTCCTTGCCTATTCTATTTCACGAGTT
TTGGTTTAACTCTTTGTTTTAATTTCGCGTAAGTGATGCgcaaaaaattt
caagtaacaaaatttttaattggATAATAATGTTAATGAGCGCagttttc
aactaatcaaatttaattcacttgattttttttcacgtacatgatatgaa
atcaaaacaaaaaaatgatttgaacCCCTCCCCCCTGTATTGTAAATAAA
GTGGGTAGAAAGTTGGCtgtcttttgacgtcaatgcaaatGAATTCCTTT
AATCTCAAACGCTAAGTAAACATTGATAAGCCGATAATACGCTGGGAACA
AGGTTGGTGTCCTTTAAATTCGCTTGGTATGATGACAAACACCCAAAGAG
CCAtctatgtaatttttttttctcttttttttttatatccaGGAACACAA
CATGTTCATTCGCTGATTCATTCGATTGTCACGTGTTTTCATCACATGAT
CCATTCATTGTgagttggaattttttattgaaaattgtagattaggcgag
accaatttgattagttgtttaataaaacaacataaaacaacaaatttaat
tggctacgtagataaaaaaaatgaaaattctcgTATGATTTAATAATCAA
TGTAATAAATTGAATTTAATTATGGCACATGAGAACTTTAAGAGTAACTT
TTCTTCAAGAGAATGCCACTCTCCAAATGTTTACACTCCCTAAAAACTCT
GGTCTCAATAggtcatttcacagtcgcaaagcgtaatgggtaatcaggac
cactgcacGCTattgacgacttactattggtccgaagttttgaaaatatt
ttaagattttagcgtctagccaacgggaagccattatggaggcgcaatca
gtcattattacccatgatccatttcgacttgAAACGGCTTATATCTCTCA
AATCACCGGACTATTACAAATCAAGATCAATCAATCGAAGACGAAATATG
CTGGAATTTTTCATTTCTCGCATGTTCCTTTAAagtgtttcaaccaatca
aatgacatcactctttcattttgaattcGTGTCCACTCCCAAACTAAGAA
AGGTATACCTGCTGGATTCTTTGGTCCGGGTAGATTCTGCCTTTGGATCC
TTGCAACTccttgaaaattatattttgtttcCTATTCGTAATCTTTTTCC
TTGTTTCTTTCTTTAGGCGAGGACAATTATAGATGGTATTGGTAAAGGGT
TTGACCGTTCAATTTATTGTGTGTAGCAAAACCAATGGAAGATGTCGTGA
AAGAACTTttaattagaaaaattttctggcTTTCGAATGCATATTGTTTG
CGAATAATGATCCATTCtggaaatgaaaatatttatggAGACGAATAACA
AAATACGCATGGCAGAATTTTCAAAGATGACTTATTTTCGAAATACATTG
ATACTTAAACGGCTGCACTCCCAATCGTTTGCCAAAAACCATTTGCGATT
GGAGCAATATGTACATTTGCTATTGTTATCATAGGATAGTACATTTTAGA
GAAGTTTTTATGGTTACATGTGTTACACGCGTTACATTACGAGATGGTTA
TCGACAGTTTCGCGATATCAACGATAAGTATCGATGGTTTTTTTTCACCA
CAGCTAATCATGTGTTTTCTTGAAGCGATAGAGATCTCCGTTCGGGCTTA
TGTGGATTAATGCAAAATTCAAACTGTTATTTAAC
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00049761TCONS_00049761Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00049761-proteinTCONS_00049761-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_166supercontigscaffold_166:241441..249775 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.16	7.31	9.09	8.37	27.16	21.07	30.24	31.66	16.16	13.55	13.84	12.94	9.01	7.7	6.93	10.99	17.65	20.69	6.19	7	15.28	13.72	8.85	10.04	25.25	23.78	9.3	4.85	4.33	4.48