XLOC_034198 (gene) - C. hemisphaerica

Overview
NameXLOC_034198
Unique NameXLOC_034198
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at scaffold_242:551160..557740+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_034198 ID=XLOC_034198|Name=XLOC_034198|organism=Clytia hemisphaerica|type=gene|length=6581bp|location=Sequence derived from alignment at scaffold_242:551160..557740+ (Clytia hemisphaerica)
agaaaaaaataaaataaaaaataaaaaataatactgTCAAACAATAATGG
CATTGAGATTGAAACGAGTCCCGGTAACAAATTATCGCCATTTATGTCGA
TGTCTGTCAACCAGCGGTAGTGTAAATTCAAACGTAGAGCACCATCGATT
TGCAGTGATTGGTGGTGGAGCTGGTGGTTTGAGCGTCGCATCTTATCTTG
CAAGAAAGTTTCCAAATCAAGTAGCTGTAATTGAACCAGCAGATGTAAGT
GGTATGGATTTGCTTAAAGCTATTTTGATCGTCTGATGAAAAAGCACCAA
ACTATTTGATTTCTTGAGTATTATTTGATTTCTTGAGTATTAAGCTGAAC
CTGATATCAATCCTGTTTAATTTATTGTGCTTCAGTAAAATAATTCTACT
GTATCATTTGaagctactgaagttgagcctaTTGTGTTGCGCACGTTAAT
TataattataatataaaataattaATGTGTTTGGGTAAAAAATACAACAT
GACTATTCCTTTTAATACACACTCATTAGAGGTGAATTACTTTCTGCAAG
AAAAACTTTACCGAGTTGAAAGATTTGCCTACGAATCAACCTTCGTTTTA
CGTAGAATCTACCCaaggggtactaggtttgcgagatgacggcTATTTCC
GAGCCAAAGATCGAAAATATACCCTTTAGAGAGATGAAAAATTGGCGTTT
TCGGAACCCTTAGAGAAgcatttttgtcgattttcactGGATTTTTGTCT
AAATTTTGGACCCTTTCTTTTTGGActctttttaatgttttttgtacccc
tttgagagactttcgagggtgtaaaaagtgaccCTTATGGCTCGTATATA
CCCGACAGccatttttcctatttttcctatTTTATTGTATATACAACAAC
AAATGATGTAACCTTTCATTTTAATCTCTGGCAAATACTAAGTGCTCCTA
AAGATAAGGAACCAGTAATAAAGGGTTAAGTTTTCATTTATAGTCAAACT
ATATTTTATTGCATTTTAGTATCATTACTATCAACCAATGTGGACATTAG
TTGGTGCAGGATTGAAAGATTTGGATGATTCGATGAAGTCAATGTCACTG
GTCATGCCAAGAAATGTCAAATGGATTAAAGAAAAAGCGGTCAAATTCGA
CCCTAAAGAAAATCTCGTTCACACTGATAATGATCGACAGgtttagtttt
attttttttattttcaacggAGCAAATTTTCTTAAAGCCTGAGATCTTTC
TAAGCACTTTGAGTTGGGgctcttttttaataaatttagaTCGAGTTTCT
TATCTGCTCAGCANGATCTTTCTAAAAGCACTTTGAGTTGGGgctctttt
ttataaatttagatCGAGTTTCTAATCTGCTCAGCGAAGCTGTGTGTCAA
TGTAGCTGGGTGAATTGCAGAAAAATCATACAATGTCCCGTCCGCAACAA
AAGTTCCATTCATGCTTACAAGTCAAGATCTGGGATCTAGAGGACCCCCA
TTTTTGCTTTGTTGTGACATACTAtggtaaaaactaattaatagGGTCCA
AAAATTTTTCCCTTCCGCAACGGTGCAAATGTcttaatttctcatttttt
gagaGAACTTTAATGTTCTAACTGTATCAGGCCAATAAACTATAGGGAAC
TACATGCTTTTTGCAGCAGtatcatttttcttgactttacATGTACTAGC
TATGGGTGAAAACCTTTTTGTCCTGTCCGCAACAAAGTGTCCCGTCCGCA
acatttttctcaagattggggctgtaacaaaaaaattatattacaCTCCA
AAAGGAAGGCTATTTAGTAaagttcacaaaaatgtaaagtTCTTAGAAAT
TGCATTTGCCAAAGTTGATTTATGGGTCCTCAAAAAGTGCCTGTTGCGGA
CGGGACATTGTATGATTTTACTGCAATTCGCCCAGCTAGGGGTCTAGGGG
TgctttcagcccccccccccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNAGTGAGCTCAGGGCAAACGCCTGGTGGTGATTTAGAGGGCAAAGCTC
CCATAGAATTCGATAATGTATATTAATCTAGTTACTGTTgcttgaaaaca
tgaaaaaaaaaagttgaatttttctaaatctacTATCAATCCTAATTTTG
TTTATTGCCATTTGATTTCAGATCAAATATGATTTTGCTGTAGTTGCTCT
TGGCATTCAATTACAATTTGAAAAGGTATtagattatttttaaataatac
tCGAATAATGATACATCAAATCTGTTAAGaaataaatagaaaagaaaaac
tttaatgGTGCAGGCTACCTTAAATGTCCCATTATTCACCAGGGCTTACA
CATAACTTCCAAAATTATCTTTCTGGAGTTTTTCTGGCGTATGCATAACA
CTACCAGGTCAAATCTGAAAAGTAAGCTTCAAAGCTTGCCCTATTGGAGA
ATTATTTAGCCATGTTTAACGAAAAGTTTTGATTGATCGTTTCCACCAAC
AGCTTCCAGGTTTAACAGAGGCACTTGGTACCGATGGTGTAGGGTGCAAT
TATTCAGTCAACACAGTCAAGGATACATTCAAAGGCTTACAAAAGTTCAA
TGGTGGTGAGGCTATCTTCACTTTGCCAGCTACACCAGTGAAATGTCTTG
GTGCTCCTCAAAAGATCATGTATCTTGCTGATGAAATCTTTAGAAAGGTA
TCCAAACTGGGAACTTTACTTGTCATTATTTGGTATTAAAATAGCAATGA
CTTTAAAATTAAGGGTTAAAAAGTCTTTTTAACCCTTACTGTAGGGGAAA
TTATGAGGCCTTGCACTGGCCAAGAGTATTATGAATTGTAAGAGTTACCA
ACATTGCtcataaaattgtaaaaagttgCTACTCGAGCTATTTTTTCTGT
ACAAAATTTATTATAAGCGATTCTtattttcgggtcagggcttGGGTTAC
TTAGCACTCTAGCTCGTTTTCTGAAtaaatttgctttgaccacccctgat
atttTACCCTATTTTTGCTTATTGGGCCATGGGCTTTCATTCTCCATGGT
TAGATAGAGTCCTTGAGTCCTAGCAACCTTGTTAGTTATACTTAATGAAT
CTCTCAATGTATGCATCATCATAGAATGGTTGTCGCGATCAGACCAATAT
TTCTTACAAAACACCAGCTGGAGTGTTATTCGGTGTTGAAAAATACAGAA
ATTCTTTACTGAAAGTTTGTGCAGAAAGAGACATCAACGTTGACTTGTTC
CGCCATCTCATACAAATCGACCCTTCAAGAAAAGAAGTCGNACGTTGACT
TGTTCCGCCATCTCATAAAAATCGACCCTGCAAGAAAAGAAGTCGTTTTT
GAACATACCAATGATGAAAGTACGCCTAAGAAGACGGAAACTTTAAAGgt
ttgatttttgattgataGTCTAATAAAGAAGAACTAACTATTcagcttct
tttttttaaaggaaatagatttcgatttttaGATCGTGTAGATTGAGTCT
GAGGACCCTTGATAtaacttctttttcttttttttgcttaacTTTATTTG
TTAATCAAagtataaaaatttgaaatctttaaaaacgGTCTGTTACACTG
CTCTAATGCTCTACAACCATTTCGGTCTCATCTTAGCAGAACAGCAACAT
AATTTTCTGGGATTGGTTTGAGTTTGAATGATTTTCTGACCTATTTGAAG
ATCGTTTNTCTGTAACGATTTCGGTCTCATCTTAGCAGAACAGCAACATA
ATTTTCTGGGATTGGTTTAACTGTTACACACGACTAATAtctcaaaatat
atatttttcagtaTGACTTCATCCATGTCACACCTCCTATGGGACCATAC
CCTGTTCTCAAGAACAGCTTATTGGCTGACGATAATGGCTTTGTTAACGT
GGACAAACACACTTGTCAACATGTCCAATACTCGAATGTCTTCTCTCTTG
GTGATTGCTCCAGTCTTCCCAACAGTAAAACAGCCGCCGCAGTGGCTGCA
CAATCGGAAGTTGTTCGTAAGAATTTGACGAGTCTAGTAAATGGGAAACC
ATTACAATCTAAGGTAATTTTATGCTCCATTTTGGAACAAGGAATTTATT
TTTGCCTTCTCGTCCTCATCAAATATCATTTAAAGGGTGGTTAATTTTGA
GTTTCTTTCGTCTATCTACACAGTAGATGAAATGCATGAAATCATCATGA
CCTCGTTTTTCAAGTATTGTTGCTAAAGACACTACCCCGTCATTAGACAG
AACCAGTGGTCGTGAACAttttttatcggcgatccaaaaaatatctgcaa
tctgattggttaaaaagagtacaatatatcttgtatttcacatgtacaaa
atataaattgacgaaaagatgttgttgcattgtagcggtagtaGCAATCt
gacgtcactttgctacaaaagtgccctgcgtttttttccaacacaaaaag
cgtatttttttgggtcaccgataaaccagttatcagacatttgctcgtac
aatatggaaatgttttactcgttccggatttttcgtatattttcctcgcc
taaaggctccgaaaatattgtacggaaaaatctcggaactcgtaaaatat
ttatCATATTGTACTCGTAACtttccgataactattacgtatCAAAATTG
ATAAACGTCGTTTGGGAATATCGTTCgacgtattttttttttgaaggtaA
GGCCTGCAATGATTTTGTTATATCTTGAGAAGAGCGTATTGCGCCAAAGC
CATTATGCCATTATGCCAAAGCCATTTATGCAAGTAATGCATGGTAGAAG
AGAATACCATatcgtttatttatttttaaacataATGATGCTCGAAAAGA
ACGCCTGAAAGTATAGTTACTGTAGAATTTCGctattcgaacttctatca
tTCAAATCTTTTCTTTAGTTTGAATTTATCCCGATTCCCAAGGAAAAAAC
TTCTAAtatactttctgtaattcgaataaaataaaactaccgttcgagtt
cgaattagcgagagtccacTCTAAACGGATTCTTATTATTTTGTTCAGTA
TGACGGTTATGCATCGTGTCCACTCATCACAAGCTCAAAGTCGTGTATTT
TAGCGGAATTCAATTATGATGGACAACCTCAAGAGACGTTCCCTCTTGAT
CAAGGAGTGGTAAGTCTCTTTCACCATAAATATTTGACGAGTAAAAGGTT
CTTCGGCTCCGATAATGACTCTTCGTTCAATGGGCTATTCAATTTTATAT
CTATACAAGTGGGAAGGAATAACCTTTCTTGGGGGTAATCCGAAGAAGAA
TTTCCAAGGGGTCTtaggaaagatttttttctttcaagggGTAAAAAGTA
TTCTAAAACTTCCAAAGAGTAAAAGACTGGTTTAAGTTCTTCCActctca
ctttaaggtatgaagaataatttttccaagggtttaCTTTAAAGCGAGTC
TTTCTTCGCTTTAAAACCCCACATGCACAAGAAGCTGCTTTTATCACTAA
CTTTTAACACTAATATTTTTGCATCaattttctttactttcctTTCTCGT
TTTCAGGAGCGAAGAAGCATGTATCATTTGAAAGCAAACTTCATGCCGGA
TTTATATTGGAATTCATTGATTCGTGGAACTTGGCCTGGTCCTGGTCCTG
TAAGAAAGATTTTACACATGGGAAGGGTTTGAAGgttttttttacggaat
ttaaTTTAATAGACACACAAAAAACGATATTCAatttagaaacatttttt
tataaaacacaTCATTTTGTACCGTAATGGTTTTTGTCTAGACAAAATCG
AACTCTTCTGCAAGATAGTAGAACTTTTTTGGAGACAATAATATTATGAG
CTACCTAAAGTTCTCCTAAATATCTTGAACAGTATACTCTAGCTTATTAG
AAATTCTGTTATTCGAATCgttctataatttgaactaaTTCTCATTTTCC
ATAAAGAAAGAactatactttctataattcgaatctctctgtattTCGAA
TAAATGAAATTCTTCATTCAAGCTCTAATTGCGAGAATCAACTATATATC
ATCTGTATCtatgttctttttattgaaatttttcacattttcaatCACGA
ATCAgaggaattaatttttttctgggtgcggcttttttttatattagagg
ttacaattttgatataaaaagaCTTTCTTAAAAAGggttgtaaatatttt
tttcaccgATTTATACTAACGATATtgattaataattaataattaattta
attgtttcttcGGTTGTTCTTGACAAATTTTTGTATCTAATTATTTTCGC
TTATGGAAAAAAATGACGATCTCAAATCAAA
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00054219TCONS_00054219Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00054219-proteinTCONS_00054219-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:551160..557740 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
66.79	72.45	54.69	46.12	45.51	32.48	35.2	40.55	44.02	46.41	45.97	57.1	39.49	39.66	47.21	65.4	28.16	35.37	27.82	25.6	28.29	26.97	36.17	33.34	21.54	20.7	26	29.25	31.43	30.45