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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00001601 ID=TCONS_00001601|Name=TCONS_00001601|organism=Clytia hemisphaerica|type=transcript|length=1488bp
ATTTCTTTCAAGCGCAGAATATTCATTCTAGTTGAACGAAGACGGAAGAC
TAAACGCTGAACCAAACAACAGAGCATCCAAGAAATTAATTTAGGAATTA
ATTTTGGTAGTGGCTTTTCCCTTTGGGAATAAAGTTTTGTTGCAATGGGG
AGCGTTGTCAAAGAGAAAACGAAGAAacgaaaaaatattaagaaaggAAC
GAGCACGAAAAGCCAAGACTACGAAATCGACGATCTAATTCAAGAGGAGT
TGAAAGACGAAGAAATACGCAAACNCAACCAGCACGAAAAGCCAAGACTA
CGAAATCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATACGCA
AACAAAGACAGAAAGAATTGGACGAAATCACACGTAACACTGCTTTAGAT
CTCGTAAACGAATTTATAGAGAACGAAACTAGAAGTTCGTTCAAACGTAA
CACAAAAAAGTCGACCGCAAAAGCGTCGAACGTCGATACAGAAAAACCAG
TTAAaccgaaaacaaagaaaaagaaagcgaaGAAAGAGACAATCTTAGAG
ATGGAGGACCACGAGACCAAGATCGATTTATTGCACCTAGATGAAGAGAA
CACCCAGTCACAAACGTCTGTGAAAAGCGCAaccaagaagaaaacaaaac
ccaaacagactaaaaacaaacagaaatgGGAAACATTTGAGGAGAATTCA
ACAGAGAAATCAGCTTCAAATAAAGAAGGTACCGAGAAAACgacaaagaa
aacgaaaaagcCAAAGGTTAATAAGATCTCACCAACTCCGCCTCCCGATA
ACGGTCAGCAGGATCGTAAGAAACGGATAAGCAAAGATACCAATGATTTG
AAATTACAGAGTTTCTCTGAGGATACCGATTTAGAGGTTGATAGTTCATG
CTTGACCATGCTTCTTATGGCAATCTCACTTGAAAGTGAACTACCACCGA
AATTCTACGCAAAATTATTGAATAGTAAGCGATTTAAGGGAGCCTTAAAG
AACATGACTCTTGAAGAACGAGAATTAGTGCTTGCCATGATGAGTGATGT
GGAGCCTGAAGTTGATTATTTGCCGatcagaaatgaaattttcattgatA
GTTTCAAAGATCGTTTGACCGTCCCAACTTAAAAGATATGGAGAACTTCT
TACCATAAAAGTCTAGGGTAATAAGAGGTATCGAACAGTCAGTAAAACtg
aaattcttaaaaatgaaaagttcttctTCGCCGAAGAGACCATCAGATTG
TATATTGAAAGGTCAAATGTAAACTCTTGCGAATGCTTATTAAAATGATG
TGATACAGTTATGAGAATTCAAATACGGTATAATATGACTTTAGACTGga
ttttcaagttaaaaaaagGACGATAAAAGCAACGCAAACTGGCATAAAAC
CAAAACACCCTTAATATAATCGGTCTCGGACAAACGGTTTACTGGGATGC
AACAAAATCTCATTGTCATTTACGAATGGGatgttact Run BLAST on NCBI protein sequence of TCONS_00001601-protein >TCONS_00001601-protein ID=TCONS_00001601-protein|Name=TCONS_00001601-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MEDHETKIDLLHLDEENTQSQTSVKSATKKKTKPKQTKNKQKWETFEENS
TEKSASNKEGTEKTTKKTKKPKVNKISPTPPPDNGQQDRKKRISKDTNDL
KLQSFSEDTDLEVDSSCLTMLLMAISLESELPPKFYAKLLNSKRFKGALK
NMTLEERELVLAMMSDVEPEVDYLPIRNEIFIDSFKDRLTVPT Run BLAST on NCBI transcript from alignment at sc0000011:760741..767676+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00001601 ID=TCONS_00001601|Name=TCONS_00001601|organism=Clytia hemisphaerica|type=transcript|length=6936bp|location=Sequence derived from alignment at sc0000011:760741..767676+ (Clytia hemisphaerica)
ATTTCTTTCAAGCGCAGAATATTCATTCTAGTTGAACGAAGACGGAAGAC
TAAACGCTGAACCAAACAACAGAGCATCCAAGAAATTAATTTAGGAATTA
ATTTTGGTAGTGGCTTTTCCCTTTGGGAATAAAGGTAAGtagctattttg
aaaaaataaataagtagATATGTAATTAACACGAACTAATTTCGTGTTGG
TTTAGTTTTaatttagactggagtcgtttataatgcatgtaataataata
ataaacacaaataatgatacgggatttagtttgtataaacgactggaaga
atccggtgttccagccttatagataccgggcctagctacgcagaaacttg
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtttttgtttggagtta
gtgcacaaaggtttctagacgactaaaatttacttttttgctttatttct
aatatgtctgaattagtcgtctagcttgctagactagtttTAATTTAAAT
CCCTTCCATTAAAACCAtccgtggtgtccttgaaaactagcaaaaaaaat
tcttgttttttttgcatcgtaatttcaaggccgttcaATACTTTTGTCTA
CTTAAAAGGTATCTACAattatggacaaaatatttgagataaATGGGATT
TCCCGACGAAATTTAAGacttaaaaacttaaatttaCTCGTACAAGGCTT
ACCATATAGCCTAGAATCCACCAAACccttctaaaatcgaaatattcaat
gaaagaaactggaagtgctaaaatagcaattctcgcccgaactttaaatt
ctgaaaaacgttaaaatacactaaaactttcaatatattttgaccataaT
TTTACTTGTATTCGAGTAATAAGGTATTCTCAAGTAGTTTGTGGCGAACA
GACAATGACAGTAAACGGCAACGAATTTTGACATTTACGTAGATATCAGG
TCAGGTACAATAGGATGTGAAATAACGCCACTAGGTTACTTCATTTAAGA
ATGTGGTTTTAGTTTTGTATCCAATTGAATCTGCTAAATTGTTTGGGTAT
GTTGGTTCATGGGTTGAATTGGTGCTTTTTGACCGATTTGAAGCGAGAAA
TTGACCCAAGCAAACGGAGCTTTTTGTTCGGGGTGCGTTTGTCAATTTTG
TACGTGGTTGTGTGGGTTAAAATATATCTGTGTTGGTTATGAAACTTTTT
TGCATGCGTCGATAATCCCCACGCAATTAtgaactgaaaaaatgaaagaa
gagaCTTACGAAATCGTTTATGTTGTAGCTTTTCTTTACAATACACCAAA
TCCCATAAAATCATTCCAAATAGTCAATAATCATCGAATAAATCCCTAAA
AAGAGAGGTTTGTAATATGTGATTATTAGCTTTGGATTGTGTTAGACGTA
GAcaaggtgaaaaaaaatttcagtttaGCTTTTCAGAATTCTTAGGCCCA
TCGATTTAGAACTAAAGGCCCTTTTCTAGGccactaaaatgaaaacatct
TGAAGGTGAAAAATGGTAGTCTACTGTATCAGACCGCTCCGAGCTTTAGG
CTAGGAAGGAGAGGAGGTTTAACGAACGGAGCGAGGGAGATATGGCGTAG
CCTAGAAAAATGGTGGTTAATACGAGGAGTCGATTTTTTCCAGTGAAAAA
CCCTGCCTGACTGGGCATTTGCAGATTCTGAGACTGGTAGGAGAATGATG
TTTATTAAGTGGGCAGAATCCGTTGAAAAATCACGCAATGTAAAACAAGG
TCCATTTCCGTGACATTTGAAATATGGCCGATATCCTATAGGTAcacaat
aacttttttttatatgagctgaaagcaatgatagtaatatTTCAAAAcct
gtaaaaatttgaaacatcGATCCTGATATTGCCAtggatttaaaaattgt
ttcaatatttttagttgGATTTAACAAGAGTAGTTGACAAAGTTCAGACT
TTTACAACACGGAAAGGTTGTACGCTTATTTCTAACAAGCCGAATCAAAC
TAATGAAAGTGAAAGAGACGACAAAGTAATATAAATCGGAAAACGTCGGG
ATAAAATTGTAGATAAAGTAAAGtaacatttcaaaaataattagcgaagt
aaagaaaaatttgaaaatttgaaaaatcaaccttttttgtaagaacaggT
TATCAAAAGAAATACAAACTGCCATTATTcctaaaaataatttatcaagT
CCGTGAGCATTCAAACAAAAGACTTGATTCATTTGATACGAGCGGTAATA
ATGTTGATAATTTCAACATCCTCTTTAAAAACAACACAACAAGCATTCTT
ACTGGACAGTACacttttgaaatgaatttttctttcaaaaaaaatatgaa
taaaaatagaTTCAAGAAAGGTGTAAATTGACCGAAAAGAGGacagattt
ttataaaaaaatatggaaaaagaataaaatttcaaacttatatTTCATTT
TGATCTTTTGTAAgacgaaattttgaataacgTTTGGTCGCACTCAAGGG
TATGGACACCAGTCAGTAATAAAGGTAAAGGATACGATACAGTGGGTGCA
TCTTGcaattcctgcattaataacacgcacgcgtaatttgtcgttctttt
aaaccacttGTAGTTAATTCCCGGGATAAACAAACAGAAATGAATCGCTA
AAGGTGATCCAATTattttcggtcggggttgtgaacggcaaaaatatgaa
atttggcGTTCTTTTCtgtcgttttttataaaatttgtcgttttttttgt
ctattttcggTAATGCAGGATTTGTAAGATAGAGCCTCTCATACGataag
ttatttaaaaaaaatttatttcaaaatatcttttaaagATGCATAATTTA
GCTGTCCTCGATCAATCAATTTTAACGTTTGATACACTAAAAACTAATTT
AcgttattttatcaaaaaccgGTTGTGATTTGCTGAAGCATTAAAAGCAT
GTGAAAACATGACAACCTCTTTAGAACCTGTCTTTTGAAGCATGTCTaat
caatgtcaattgaataacAAACTTGGTCTGGAAGTCAggttattttgaat
ttcaagattGAGACTTTTTTGCCTATActttttaatcacatgatcagaAT
CCGCGTTAGAGCGTTAATTGTCGCAGTGAAAGGTAATGTGACATCGCCCA
TTTAATTAGCCCGGGGTCCAGTTAAAGTTTTTTGATTGACTGAATAGCGC
TAATAAGAGGCCCGGCGTAATTTGGCGGTAGCAAATACATGCACTAAatc
cagtccctttttggaaaaacaaacaaacagaaaacGACCAATAGAccaaa
tttttttcagatttttgaggtatttacatgtttttattatagtttcataa
gttttgatggggttttagaatattattttattgatttgttgttttcttat
aatttttgaaaacgaaagtgaaaaaaatcaagatggcgATATCCTCTAGT
CCGGACTTCCTGAGCAGGTGGATATCTAGCCCGGGGTCctcttaaagctt
tttttatagactggatggcgcaattaagtggcccggtagtatatggtaat
atgcttttgcctaggcggactgtaaaacagtccgccagattttagttgtt
tttggaaggtaaaaacagtatgtagcaatgtttttatacgagaataaggg
attgcaaacctgttattgatgtttgtttctcatttttgattatatctttc
aacttcgagtagttttattgttatttggatttttaacattttttttcaaa
atggcgacctcgccaaatgctcctagtctacttcactggactcagcgtca
taaaaaattgtcaaaaagcaaagttcagccaaaagtagactctagtctag
tggATATCCAAATTGACAATGTTCAGATTGTTTAATTTAGCGTATCTTTC
AAAGAGAAATTTTAGATCATTCATTCTGGATCTAAATGAGTTTTAGTTGT
AGTGTGACTGGAAATTTCCAGGTGAGACAAACAGATGATTTGTGTTCAAA
ACACGAAATTCAcgtgttttttcttcttcaatcttCAATAAATGAGCTTG
AAAATTGGAAATTAGAAGTTTGTTCAAGATTTTCAAGTTGGAAATCACCT
ATCTTAGTTGGTATAAGAGCATATATAAAGGAAAAATGATGGAACAAGAA
CGACAGGGAGCACGAGATTTTGAAATCAGTATGTAACTTTCTTCTTCAAA
AGTAGAACCTAAAATCATTCAAACTGCgggaaaatcttcattttcattct
cATTTTTACTCTGGTGTTGATCAAAAGTAAATTAAGCTCCAACAAATTTA
ATCAAGGAAGCTTCCAGAAAATAAAGTGACTTTTTTATTGGTTAAAATTG
ATGTTGGCCATGAGAAACGCTTTGAAAAATGCCTCCTTTGTTTTAGAGCA
ATTTATTTTCGTTTGGTTATATACTCTAGATTAGGCTtgagaaatagaaa
aattaccttttttatAGGTATTGGCTAAACAAGTTCTAAGACATTTTAGG
TTGATTATTTTATCATGCTGGATGAGAGAGCTTAGCATACCCGGTGGAaa
aaccgtaaaagtggggaggctgaagactcaaatgggataaaattcgcact
aggaatttgagaaaaatggttagaaaagaagattgttttgttgttgggAG
ATTTTATTGTCGCTCTATTATATAGAATAAAAGCTTCGAAAATATTACAA
AGTCTGCCAATCTTTGGAATTATCAATTAGTTTGAAAGGGCCTTCGGAGG
TCAAATGACGTAGAATTTCGCCCACTCATATTAAGATTTGTCAACTGTTA
AAAAGCTAGGCAAGAAGAAATCGATAAAATTATTAACATTGAAAGCAAAA
AAAGGGAATCGATAGGGGGAAAGTAataattattcaatttttatgtttct
atatttctattttcactCATCTTCAAGTGGCTAGTACAATAGGAATATAG
ATTGAACAGTAACGAGTGATCTATTTTTTTCACAGCGAAATTATTTATGT
GGCCACCAAGAGGTATTCGTTCGAAAAcagttttctatttttttaatatt
ttcctacgttttttcttccttttttccttcAGTTTTGTTGCAATGGGGAG
CGTTGTCAAAGAGAAAACGAAGAAacgaaaaaatattaagaaaggAACGA
GCACGAAAAGCCAAGACTACGAAATCGACGATCTAATTCAAGAGGAGTTG
AAAGACGAAGAAATACGCAAACNCAACCAGCACGAAAAGCCAAGACTACG
AAATCGACGATCTAATTCAAGAGGAGTTGAAAGACGAAGAAATACGCAAA
CAAAGACAGAAAGAATTGGACGAAATCACACGTAACACTGCTTTAGATCT
CGTAAACGAATTTATAGAGAACGAAACTAGAAGTTCGTTCAAACGTAACA
CAAAAAAGTCGACCGCAAAAGCGTCGAACGTCGATACAGAAAAACCAGTT
AAaccgaaaacaaagaaaaagaaagcgaaGAAAGAGACAATCTTAGAGAT
GGAGGACCACGAGACCAAGATCGATTTATTGCACCTAGATGAAGAGAACA
CCCAGTCACAAACGTCTGTGAAAAGCGCAaccaagaagaaaacaaaaccc
aaacagactaaaaacaaacagaaatgGGAAACATTTGAGGAGAATTCAAC
AGAGAAATCAGCTTCAAATAAAGAAGGTACCGAGAAAACgacaaagaaaa
cgaaaaagcCAAAGGTTAATAAGATCTCACCAACTCCGCCTCCCGATAAC
GGTCAGCAGGATCGTAAGAAACGGATAAGCAAAGATACCAATGATTTGAA
ATTACAGAGTTTCTCTGAGGATACCGATTTAGAGGTTGATAGTTCATGCT
TGACCATGCTTCTTATGGCAATCTCACTTGAAAGTGAACTACCACCGAAA
TTCTACGCAAAATTATTGAATAGTAAGCGATTTAAGGGAGCCTTAAAGAA
CATGACTCTTGAAGAACGAGAATTAGTGCTTGCCATGATGAGTGATGTGG
AGCCTGAAGTTGATTATTTGCCGatcagaaatgaaattttcattgatAGT
TTCAAAGATCGTTTGACCGTCCCAACTTAAAAGATATGGAGAACTTCTTA
CCATAAAAGTCTAGGGTAATAAGAGGTATCGAACAGTCAGTAAAACtgaa
attcttaaaaatgaaaagttcttctTCGCCGAAGAGACCATCAGATTGTA
TATTGAAAGGTCAAATGTAAACTCTTGCGAATGCTTATTAAAATGATGTG
ATACAGTTATGAGAATTCAAATACGGTATAATATGACTTTAGACTGgatt
ttcaagttaaaaaaagGACGATAAAAGCAACGCAAACTGGCATAAAACCA
AAACACCCTTAATATAATCGGTCTCGGACAAACGGTTTACTGGGATGCAA
CAAAATCTCATTGTCATTTACGAATGGGatgttact Coding sequence (CDS) from alignment at sc0000011:760741..767676+ >TCONS_00001601 ID=TCONS_00001601|Name=TCONS_00001601|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at sc0000011:760741..767676+ (Clytia hemisphaerica)
ATGGAGGACCACGAGACCAAGATCGATTTATTGCACCTAGATGAAGAGAA
CACCCAGTCACAAACGTCTGTGAAAAGCGCAaccaagaagaaaacaaaac
ccaaacagactaaaaacaaacagaaatgGGAAACATTTGAGGAGAATTCA
ACAGAGAAATCAGCTTCAAATAAAGAAGGTACCGAGAAAACgacaaagaa
aacgaaaaagcCAAAGGTTAATAAGATCTCACCAACTCCGCCTCCCGATA
ACGGTCAGCAGGATCGTAAGAAACGGATAAGCAAAGATACCAATGATTTG
AAATTACAGAGTTTCTCTGAGGATACCGATTTAGAGGTTGATAGTTCATG
CTTGACCATGCTTCTTATGGCAATCTCACTTGAAAGTGAACTACCACCGA
AATTCTACGCAAAATTATTGAATAGTAAGCGATTTAAGGGAGCCTTAAAG
AACATGACTCTTGAAGAACGAGAATTAGTGCTTGCCATGATGAGTGATGT
GGAGCCTGAAGTTGATTATTTGCCGatcagaaatgaaattttcattgatA
GTTTCAAAGATCGTTTGACCGTCCCAACTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00001601-exon-sc0000011-1491911889:760741..760874 | TCONS_00001601-exon-sc0000011-1491911889:760741..760874 | Clytia hemisphaerica | exon |
| TCONS_00001601-exon-sc0000011-1510915933:760741..760874 | TCONS_00001601-exon-sc0000011-1510915933:760741..760874 | Clytia hemisphaerica | exon |
| TCONS_00001601-exon-sc0000011-1575043694:760741..760874 | TCONS_00001601-exon-sc0000011-1575043694:760741..760874 | Clytia hemisphaerica | exon |
| TCONS_00001601-exon-sc0000011-1491911889:766323..767676 | TCONS_00001601-exon-sc0000011-1491911889:766323..767676 | Clytia hemisphaerica | exon |
| TCONS_00001601-exon-sc0000011-1510915933:766323..767676 | TCONS_00001601-exon-sc0000011-1510915933:766323..767676 | Clytia hemisphaerica | exon |
| TCONS_00001601-exon-sc0000011-1575043694:766323..767676 | TCONS_00001601-exon-sc0000011-1575043694:766323..767676 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000011 | supercontig | sc0000011:760741..767676 + |
Blast
The following BLAST results are available for this feature:
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