TCONS_00001700 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001700
Unique NameTCONS_00001700
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001700 ID=TCONS_00001700|Name=TCONS_00001700|organism=Clytia hemisphaerica|type=transcript|length=2221bp
CAGCTATATTGAGGTGAGTAAAATTGGATATAAAACCTCCGCTATAAAGC
GAAAGAAGATAATCAAGAATTAACTGAGAATTAGTTAGACCATGACAAGA
CCAAAACGAACACTACTACTCTATGTTTTGGTTTTAGCTGCTTTAGTAGA
TTTGGTCAAGACTCGGAAAAGCATCAAGCGTAAAAGATATGAATCCGGCT
GGTGGAAAGAGTCTTACAATGTCCCAATCATCGTCAGAGGTCCTGGTGGA
AATTTCATCGTTGGCAGAGAGATTgacaaacaaaaaagaacaatcACAAA
AAATGCTGACATAACAGAAAATCAAAGACTTCCATTAAAAAGACTCCATA
GTACTAATCTTCTTCGCattcttattttgaaaaaaattgaagagctTTTA
CTTGAGAAAAATGATGGCGAAGTTCAAAATGTAAGAAGTACGAAGAGTtc
caaaaattcttaaaatattttaacatttatttatttttatctacatatga
ttttttctatttattcCCTAATTGTACTAACTAAATTAGCGATTtcgaaa
tatcaaaaatatttcgtaCCTTTGGTTGCTTTGCAAAAACACAAGGTCAA
AGTCTAGATCCCTTAATTACGAACAACCTAAAACTGAATTTTGGTTTCAA
TTTCATatggataattttttattcttatATTTATATCTACTATAAAAATT
TAAGATCTACACGAAAATGATCAAATGGTTAAtagcttttttctaatatt
tgtacaaaaatgtaattatagtttattaaaaagtaaaaatgaaattctaa
ttCCAAACCACACAGATCTGTTCTATAAGACTGTTCTATAATTCGGCAAA
AAAAGTCCCCAGTGGGTGAAAATCTCTTCAACTTCACACCCATCGGAAAA
CGACACTAAACTCTTATCCACACTTGAAATAAATCACTGCCGAATTTTGA
TTTGTAAAAATTGTTCCCTCTTTTTTAGGGGGAGTCATTCCGTCATTACT
TTCCCTATTGCCGTCAAACCCTTCCATATTagggccaaaattttgtcaaa
tttccgTCTCGAACAGTATAAGCAAATTCTGCAATTCTGACCAAATATTT
TGCGAATACTGCCTTTCCGAATAAAAAAGAGTTAATTCCGTCCCCACCCC
CATCAACCGTGGAAACCCTACCTAATTCATCCTCTCTAGCTAAGAAATTC
CCACTGGGTGAATCGTAACagattcaaaaaaagaaatgttcGAAATGATT
CCCTTTATTGCGACTGTCAAACCTacttatatataatatatataatagTT
ATCGCACGGTACCGAGTACTATATGGGATATTTTATATATTCATATTTTc
agagcctttaggcgaggaaaatttagaaaacttttAACAAGGAAAATATA
TCGCATATTGTACGagtaaaagtgtgataactggtttctcatcaatttaa
aaaatacttttcgggagtttctaaacatcgacgaGAAATGGTGATCACGA
CCAACAACCATTTAGAGCCTAagaaagggaccctgaccagcggcacgtcc
ccgtacccaatttcgCCTAAGTGACCCCTCGGGAATTatgaatgaaaaga
aaacatttcggAGCATAAGATTGTACAAAATATCGCTTATCAGACCCCTT
ATGCTGAACACGGTTTTGTATTTTTACGTGTAAAATATGACATACAGCAT
TTATTTTTGCGCCTTTAGCCAATGAGATTGATCATGTTTTTCATGTTAAT
GATAAAGTGATTACAGTATATTGTTCATTGATCTGATCTTCCTGAAAGAA
CAGACTTAAAATCACATCCGAATGAGTCTTACCATGATCTTCCTatacat
gatatgcaccactggagagtcttctgagaacttcccacccaatacgtcac
ttaaagaagagaaaaagtgacgtattgagtgaaacaaaaacagaaaaatt
gcaTAAGTTCGGGAAGTCATTTCAGTGGTGCTTATCATGAATACAAAGCC
GCGAATGAGATACACTTTGAGTAAACTGGCGAAGAATTTTCCTTTGTTAC
ATACGCAAAGACTCAGGCAGGTCCATAAGAGACGGGTAAGAGGTTTGGGT
ACCAGGTTTGCCTACTGATATTGAAGCAATGTTGACAGCTCGCTGAACCT
TCTCATTGAATGATAAGTCTTCTCTTCTGGCGATCATAAAAGCCAGTGAT
CCAACAAAACAATCACCTGCT
Run BLAST on NCBI

protein sequence of TCONS_00001700-protein

>TCONS_00001700-protein ID=TCONS_00001700-protein|Name=TCONS_00001700-protein|organism=Clytia hemisphaerica|type=polypeptide|length=123bp
MTRPKRTLLLYVLVLAALVDLVKTRKSIKRKRYESGWWKESYNVPIIVRG
PGGNFIVGREIDKQKRTITKNADITENQRLPLKRLHSTNLLRILILKKIE
ELLLEKNDGEVQNVRSTKSSKNS
Run BLAST on NCBI

transcript from alignment at sc0000011:1151333..1154063-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001700 ID=TCONS_00001700|Name=TCONS_00001700|organism=Clytia hemisphaerica|type=transcript|length=2731bp|location=Sequence derived from alignment at sc0000011:1151333..1154063- (Clytia hemisphaerica)
CAGCTATATTGAGGTGAGTAAAATTGGATATAAAACCTCCGCTATAAAGC
GAAAGAAGATAATCAAGAATTAACTGAGAATTAGTTAGACCATGACAAGA
CCAAAACGAACACTACTACTCTATGTTTTGGTTTTAGCTGCTTTAGTAGA
TTTGGTCAAGACTCGGAAAAGCATCAAGCGTAAAAGATATGGTACGTATT
TTTGAAAGATATACTTTTCTTAAATAAAGATATCGGAATTATTGATGGAG
CTGATTGGTGAAATCTTTTTCCCATTCAGGTACTATACTATAAAGTGAAA
AAATGGATAAACTCATTTAGCATTTTTTCAGCTCATTTTACACCCCCTTC
TCAAAGGACCCGGTGGGGTTTTTCAGGCAGTGGGGGTAAAAATTACGGAC
CAAAACTCGATGGGGATTTGAATACCATAGTTTTCGAGCGAGAAAACTCA
GTGGGGATGGAACATATGGCATAATATTCTGCAGCGTGGATTTGCTTATC
TGATTATAGCGGGGAAAAAATTTTGAGTTTAATTTTCCTCCGATGACGAT
TTTGGCCAAATTTCTAGTGAGAAGGGGTTCAGGTGGGTCTTTGAGAAGGT
GTTGTTTTTTTCCTATATGTGTTATATCAGGTCGATAGAATCGTTTGTTA
TCTTTTCCTACAGGCACTTTCATTACCGTAAATTCTTATATCTTCTCATA
GAATCCGGCTGGTGGAAAGAGTCTTACAATGTCCCAATCATCGTCAGAGG
TCCTGGTGGAAATTTCATCGTTGGCAGAGAGATTGACAAACAAAAAAGAA
CAATCACAAAAAATGCTGACATAACAGAAAATCAAAGACTTCCATTAAAA
AGACTCCATAGTACTAATCTTCTTCGCATTCTTATTTTGAAAAAAATTGA
AGAGCTTTTACTTGAGAAAAATGATGGCGAAGTTCAAAATGTAAGAAGTA
CGAAGAGTTCCAAAAATTCTTAAAATATTTTAACATTTATTTATTTTTAT
CTACATATGATTTTTTCTATTTATTCCCTAATTGTACTAACTAAATTAGC
GATTTCGAAATATCAAAAATATTTCGTACCTTTGGTTGCTTTGCAAAAAC
ACAAGGTCAAAGTCTAGATCCCTTAATTACGAACAACCTAAAACTGAATT
TTGGTTTCAATTTCATATGGATAATTTTTTATTCTTATATTTATATCTAC
TATAAAAATTTAAGATCTACACGAAAATGATCAAATGGTTAATAGCTTTT
TTCTAATATTTGTACAAAAATGTAATTATAGTTTATTAAAAAGTAAAAAT
GAAATTCTAATTCCAAACCACACAGATCTGTTCTATAAGACTGTTCTATA
ATTCGGCAAAAAAAGTCCCCAGTGGGTGAAAATCTCTTCAACTTCACACC
CATCGGAAAACGACACTAAACTCTTATCCACACTTGAAATAAATCACTGC
CGAATTTTGATTTGTAAAAATTGTTCCCTCTTTTTTAGGGGGAGTCATTC
CGTCATTACTTTCCCTATTGCCGTCAAACCCTTCCATATTAGGGCCAAAA
TTTTGTCAAATTTCCGTCTCGAACAGTATAAGCAAATTCTGCAATTCTGA
CCAAATATTTTGCGAATACTGCCTTTCCGAATAAAAAAGAGTTAATTCCG
TCCCCACCCCCATCAACCGTGGAAACCCTACCTAATTCATCCTCTCTAGC
TAAGAAATTCCCACTGGGTGAATCGTAACAGATTCAAAAAAAGAAATGTT
CGAAATGATTCCCTTTATTGCGACTGTCAAACCTACTTATATATAATATA
TATAATAGTTATCGCACGGTACCGAGTACTATATGGGATATTTTATATAT
TCATATTTTCAGAGCCTTTAGGCGAGGAAAATTTAGAAAACTTTTAACAA
GGAAAATATATCGCATATTGTACGAGTAAAAGTGTGATAACTGGTTTCTC
ATCAATTTAAAAAATACTTTTCGGGAGTTTCTAAACATCGACGAGAAATG
GTGATCACGACCAACAACCATTTAGAGCCTAAGAAAGGGACCCTGACCAG
CGGCACGTCCCCGTACCCAATTTCGCCTAAGTGACCCCTCGGGAATTATG
AATGAAAAGAAAACATTTCGGAGCATAAGATTGTACAAAATATCGCTTAT
CAGACCCCTTATGCTGAACACGGTTTTGTATTTTTACGTGTAAAATATGA
CATACAGCATTTATTTTTGCGCCTTTAGCCAATGAGATTGATCATGTTTT
TCATGTTAATGATAAAGTGATTACAGTATATTGTTCATTGATCTGATCTT
CCTGAAAGAACAGACTTAAAATCACATCCGAATGAGTCTTACCATGATCT
TCCTATACATGATATGCACCACTGGAGAGTCTTCTGAGAACTTCCCACCC
AATACGTCACTTAAAGAAGAGAAAAAGTGACGTATTGAGTGAAACAAAAA
CAGAAAAATTGCATAAGTTCGGGAAGTCATTTCAGTGGTGCTTATCATGA
ATACAAAGCCGCGAATGAGATACACTTTGAGTAAACTGGCGAAGAATTTT
CCTTTGTTACATACGCAAAGACTCAGGCAGGTCCATAAGAGACGGGTAAG
AGGTTTGGGTACCAGGTTTGCCTACTGATATTGAAGCAATGTTGACAGCT
CGCTGAACCTTCTCATTGAATGATAAGTCTTCTCTTCTGGCGATCATAAA
AGCCAGTGATCCAACAAAACAATCACCTGCT

Coding sequence (CDS) from alignment at sc0000011:1151333..1154063-

>TCONS_00001700 ID=TCONS_00001700|Name=TCONS_00001700|organism=Clytia hemisphaerica|type=CDS|length=744bp|location=Sequence derived from alignment at sc0000011:1151333..1154063- (Clytia hemisphaerica)
AATCCGGCTGGTGGAAAGAGTCTTACAATGTCCCAATCATCGTCAGAGGT
CCTGGTGGAAATTTCATCGTTGGCAGAGAGATTGACAAACAAAAAAGAAC
AATCACAAAAAATGCTGACATAACAGAAAATCAAAGACTTCCATTAAAAA
GACTCCATAGTACTAATCTTCTTCGCATTCTTATTTTGAAAAAAATTGAA
GAGCTTTTACTTGAGAAAAATGATGGCGAAGTTCAAAATGTAAGAAGTAC
GAAGAGTTCCAAAAATTCTTAAATGACAAGACCAAAACGAACACTACTAC
TCTATGTTTTGGTTTTAGCTGCTTTAGTAGATTTGGTCAAGACTCGGAAA
AGCATCAAGCGTAAAAGATATGAATCCGGCTGGTGGAAAGAGTCTTACAA
TGTCCCAATCATCGTCAGAGGTCCTGGTGGAAATTTCATCGTTGGCAGAG
AGATTGACAAACAAAAAAGAACAATCACAAAAAATGCTGACATAACAGAA
AATCAAAGACTTCCATTAAAAAGACTCCATAGTACTAATCTTCTTCGCAT
TCTTATTTTGAAAAAAATTGAAGAGCTTTTACTTGAGAAAAATGATGGCG
AAGTTCAAAATGTAAGAAGTACGAAGAGTTCCAAAAATTCTTAAATGACA
AGACCAAAACGAACACTACTACTCTATGTTTTGGTTTTAGCTGCTTTAGT
AGATTTGGTCAAGACTCGGAAAAGCATCAAGCGTAAAAGATATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_000887XLOC_000887Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001700-proteinTCONS_00001700-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001700-exon-sc0000011-1575043694:1153873..1154063TCONS_00001700-exon-sc0000011-1575043694:1153873..1154063Clytia hemisphaericaexon
TCONS_00001700-exon-sc0000011-1575043694:1151333..1153362TCONS_00001700-exon-sc0000011-1575043694:1151333..1153362Clytia hemisphaericaexon
TCONS_00001700-exon-sc0000011-1510915933:1153873..1154063TCONS_00001700-exon-sc0000011-1510915933:1153873..1154063Clytia hemisphaericaexon
TCONS_00001700-exon-sc0000011-1510915933:1151333..1153362TCONS_00001700-exon-sc0000011-1510915933:1151333..1153362Clytia hemisphaericaexon
TCONS_00001700-exon-sc0000011-1491911889:1153873..1154063TCONS_00001700-exon-sc0000011-1491911889:1153873..1154063Clytia hemisphaericaexon
TCONS_00001700-exon-sc0000011-1491911889:1151333..1153362TCONS_00001700-exon-sc0000011-1491911889:1151333..1153362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000011supercontigsc0000011:1151333..1154063 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0.0384419	0	0	0	0	0	0.0400377	0.0876842	0.0696461	0.743088	0.848006	0	0.0328329	0.459008	0.414104	0.229834	0.366149	0.271217	0.167795	6.55229	4.67181	0.235886	0.154204
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001700 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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