TCONS_00001762 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00001762
Unique Name	TCONS_00001762
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1389

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000012:154147..157085+
coding sequence from alignment at sc0000012:154147..157085+

transcript sequence

>TCONS_00001762 ID=TCONS_00001762|Name=TCONS_00001762|organism=Clytia hemisphaerica|type=transcript|length=1389bp
tctgaaagggtcccaaatttaccaaacattcatatctgacagggtccact
tttcgaAATCAAGCAGCACGTCTCCGTCGGTTGTCAAGGTTGTACATGCA
ACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCtcttg
agatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAAAGC
ATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCGTCA
AGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactttgtgc
aaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACACGAC
AAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAACAGAC
AGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCTGACG
AACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTAGAA
TCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTCTTC
AACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATGTAC
CTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAAGAG
CTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCATCGC
TCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACTTCT
CATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTAAAT
AATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAATAGA
TTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTCACT
TAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAAAGT
ATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCTAAG
GATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACCCGT
CAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGTCCACA
ATGCCCTGTCTCTAGGGTTTTGTTATTCGTATCCAATCTCCTTCTGTGAT
TACACAATGTCTACCTTGAAGAAGTTACCGTCGTATTTTCTTGATATATG
AAGATTGcacaacatatttttttatgatcCAAGTATGTGGCATAATATGG
CGGTTGCTTCTTCAGGCACACGCATACTTTTGTACCATATCTGCTTTATT
GtaaataaaatttgtttataATTGACAActtcatttttgagaaaaatatt
gtgTGTAGAGTATattaatgaaaaaagaaaatttctctC

Run BLAST on NCBI

protein sequence of TCONS_00001762-protein

>TCONS_00001762-protein ID=TCONS_00001762-protein|Name=TCONS_00001762-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
MQLPLPSAHRYHHIGNSLEIFQKELANLDNVLLESISVDTRVLEQLQTYV
RQGYNNPFQVRAGLKDFVQNHMVGGLNETSPSKHDKTFYPSLIEIQNMIQ
QTEAAIETGVLSKLPTPDEPPVALRPKRKRTKTVESPGSSSSPNNNINNP
SSTTSASSLMIKRMKIDVPSNHNPDDMLTDDLKKELKTDGTLVLDDQNDT
IALTLTDNQLENFSVTNFSYDQLAQLAKIGLAALNNASKEPDGSSPQQET
IDFSQQQIMDNTDQVEVHLADKDDPNSLSTTDGESILIVTPSDVNDDKTH
LRIIATSENADQPTTTDPSAILANVVDIVDGT

Run BLAST on NCBI

transcript from alignment at sc0000012:154147..157085+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00001762 ID=TCONS_00001762|Name=TCONS_00001762|organism=Clytia hemisphaerica|type=transcript|length=2939bp|location=Sequence derived from alignment at sc0000012:154147..157085+ (Clytia hemisphaerica)
tctgaaagggtcccaaatttaccaaacattcatatctgacagggtccact
tttcgaAATCAAGCAGCACGTCTCCGTCGGTTGTCAAGGtcagtgggggg
ggggggggccaaaCGAATAGTATGGATTTTATCTTTGTGATGACATTATG
GTATGGCAACTTTTCTTCACGACCATGACAAGGCCTTGAATTAATTTGCA
TTTGCTTCCATAACATCTCAGATCATAATCAACAATCCTGAACAAAAGGT
GAACACACCGAAAttgtgaaacaaaaaaatttataagaaaaaatttattt
ttgtagaTACCGAGACCCAGTTTTGACAGCCGACTTTCTGCCTTGCCTTC
CCTTATTTTTGACGAAAGTCGGCAGGAAGTCGTTTGTCTAAAGTCAATGT
GATGCCTTCTTTTCGTCAATgcaatttcaatctttttttaagcaaagatt
tGAAACTGTAAACTTTCCGTCGATCTTCTACCGTCTCTCGCATCGAAAGG
AGGCAAAGCAAAAAGTCGATCGTCTAAACTAGGTCTAACTATTTTCTAGC
TattaatgtttttcattttcatcctcGAAGGTTGTACATGCAACTACCAT
TACCATCCGCACATCGATACCATCATATTGGAAATTCtcttgagattttt
caaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAAAGCATATCGGT
CGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCGTCAAGGATATA
ATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGGTATTCATGCatttttta
atctcaaaatatatttcaatattAAGGGGAATCTTAGAAATTGAGAGAAA
ACCTATTCAGAAAAGCtttttggaattattttcaaaatgtcactAACTTT
AGGAAAACTCTGGTGGTTATTATTTCCAGATCTCTTTTACcagaaatgtt
tgatttttaaagtttcGACTTGACTGAAGCTTGACTTTTTCATGGAGAAC
ATTGGCcttattttgttcaaaaaatcaaagaaaaatcatCAGCTATTaga
attttaaagattattttgtaAAACTAGTCACCACCAGTTGAACACATCAA
AGATATTCATGCGATATTTATATTTTGTcaggactttgtgcaaaatcata
TGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACACGACAAGACGTTT
TATCCTTCATTGATTGAAATACAAAATATGATCCAACAGACAGAAGCTGC
CATTGAAACCGGTGTCCTATCCAAGTTACCGACAGTAAGTGGTTTCAGTT
CACTAAGGCTCCATCTATTATTATCGTTCAAAACATTAATAAACATAAAC
TAGTTTTATTGATTGAGACTAATTTGATTAGTTAAGTATTCTGAATCTGG
TTTTACAATTTGTCCAGGTTGACATTGCAAGAAGCTCGATTTCAGAACGC
TTCAGGGCTTTGAATCGGTTCGATCGAAATTGGTCCTTTACTTTTAAGCG
ATAGAACCTCAAATTGATAATAAACtacttaaatttttttcatgccATAT
CTTCTTTTTGGTATAGAGCTGTTCTTAGATATCTTATTTTTGATGCTACA
AGAtatgaatgttttttttcaacaacAGCCTGACGAACCACCAGTCGCTT
TACGTCCAAAACGAAAACGAACGAAGACTGTAGAATCACCGGGATCATCT
TCCTCTCCAAACAACAACATTAATAATCCCTCTTCAACAACCTCTGCTTC
ATCTCTGATGATCAAGAGAATGAAAATTGATGTACCTTCTAATCATAACC
CTGACGACATGCTCACAGATGATCTAAAGAAAGGTAAAaatagttttagt
ttttttattttcaatttttttagtttcaacTTGTTTTCTAAGGGTGGGCA
GACATTTGGAATAACGTCAGTCCCTGATTTTTCAGGAATTGTCCTGGATA
CTTCTTTTAAAGTGCTTTTAGTGCTTTACGATGCAAAAACACTGCATTGG
TTTGAAAGTTATGCCTTATAATCTGCAAGGTTCATCTTTTTCATCCTCCT
GAAAAATTCGACTTTCAAGAAATTCAAACACATTTTTATGTATTTCCCAA
gttctttttctcaaaagtgtAGAACTTCTGAGGCTACCTCTTGGGCTAAT
AATAATTCATCGCTAaacaaataattattttctttttcccgATTATAGAG
CTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCATCGC
TCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACTTCT
CATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTAAAT
AATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAATAGA
TTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTCACT
TAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAAAGT
ATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCTAAG
GATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACCCGT
CAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGTCCACA
ATGCCCTGTCTCTAGGGTTTTGTTATTCGTATCCAATCTCCTTCTGTGAT
TACACAATGTCTACCTTGAAGAAGTTACCGTCGTATTTTCTTGATATATG
AAGATTGcacaacatatttttttatgatcCAAGTATGTGGCATAATATGG
CGGTTGCTTCTTCAGGCACACGCATACTTTTGTACCATATCTGCTTTATT
GtaaataaaatttgtttataATTGACAActtcatttttgagaaaaatatt
gtgTGTAGAGTATattaatgaaaaaagaaaatttctctC

Coding sequence (CDS) from alignment at sc0000012:154147..157085+

>TCONS_00001762 ID=TCONS_00001762|Name=TCONS_00001762|organism=Clytia hemisphaerica|type=CDS|length=3996bp|location=Sequence derived from alignment at sc0000012:154147..157085+ (Clytia hemisphaerica)
ATGCAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTC
tcttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGG
AAAGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTT
CGTCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactt
tgtgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAAC
ACGACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAA
CAGACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACC
TGACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTG
TAGAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCC
TCTTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGA
TGTACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGA
AAGAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACC
ATCGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAA
CTTCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTT
TAAATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACA
ATAGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGT
TCACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTG
AAAGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCAT
CTAAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGA
CCCGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGA
TGCAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCt
cttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGA
AAGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTC
GTCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgacttt
gtgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACA
CGACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAAC
AGACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCT
GACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGT
AGAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCT
CTTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGAT
GTACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAA
AGAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCA
TCGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAAC
TTCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTT
AAATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAA
TAGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTT
CACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGA
AAGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATC
TAAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGAC
CCGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGAT
GCAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCtc
ttgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAA
AGCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCG
TCAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactttg
tgcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACAC
GACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAACA
GACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCTG
ACGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTA
GAATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTC
TTCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATG
TACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAA
GAGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCAT
CGCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACT
TCTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTA
AATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAAT
AGATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTC
ACTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAA
AGTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCT
AAGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACC
CGTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAGATG
CAACTACCATTACCATCCGCACATCGATACCATCATATTGGAAATTCtct
tgagatttttcaaaaagaacttGCAAATTTGGACAACGTCTTGCTGGAAA
GCATATCGGTCGACACTCGTGTTTTGGAGCAACTTCAAACTTATGTTCGT
CAAGGATATAATAATCCTTTTCAAGTCAGAGCTGGTCTCAAGgactttgt
gcaaaatcataTGGTAGGTGGGTTGAATGAAACTTCGCCATCAAAACACG
ACAAGACGTTTTATCCTTCATTGATTGAAATACAAAATATGATCCAACAG
ACAGAAGCTGCCATTGAAACCGGTGTCCTATCCAAGTTACCGACACCTGA
CGAACCACCAGTCGCTTTACGTCCAAAACGAAAACGAACGAAGACTGTAG
AATCACCGGGATCATCTTCCTCTCCAAACAACAACATTAATAATCCCTCT
TCAACAACCTCTGCTTCATCTCTGATGATCAAGAGAATGAAAATTGATGT
ACCTTCTAATCATAACCCTGACGACATGCTCACAGATGATCTAAAGAAAG
AGCTGAAAACAGACGGAACACTTGTGCTAGATGATCAAAACGATACCATC
GCTCTCACATTGACCGATAACCAACTGGAAAACTTTTCAGTCACCAACTT
CTCATACGACCAACTAGCACAACTTGCGAAAATTGGATTAGCTGCTTTAA
ATAATGCTTCGAAAGAACCCGACGGTTCTTCGCCTCAGCAAGAGACAATA
GATTTTTCTCAACAACAAATCATGGACAATACAGATCAGGTTGAAGTTCA
CTTAGCCGACAAGGATGACCCAAATTCATTATCAACGACGGATGGTGAAA
GTATACTAATTGTGACGCCGAGTGACGTTAACGACGATAAAACTCATCTA
AGGATAATTGCTACTTCTGAAAATGCCGATCAGCCGACTACGACGGACCC
GTCAGCGATTCTGGCAAACGTCGTTGATATAGTGGATGGAACGTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_000946	XLOC_000946	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00001762-protein	TCONS_00001762-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000012	supercontig	sc0000012:154147..157085 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.3639	9.78312	6.09616	3.54541	43.226	32.6797	9.99993	10.8592	7.33758	5.89426	4.96618	4.24735	3.6754	3.63634	3.30663	4.86976	5.25763	4.48786	3.45367	2.84117	3.40302	3.72384	10.4165	8.76459	16.246	12.6625	2.23804	1.40299	5.37486	6.3974

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR029309	CaRF

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00001762 vs. Swiss-Prot (Human)

BLAST of TCONS_00001762 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00001762 (transcript) - C. hemisphaerica