TCONS_00001965 (transcript) - C. hemisphaerica

Overview
NameTCONS_00001965
Unique NameTCONS_00001965
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2621

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00001965 ID=TCONS_00001965|Name=TCONS_00001965|organism=Clytia hemisphaerica|type=transcript|length=2621bp
CTTTGATGAAAGGAGCTATGACATCCTTATGTAATCCTTCTATGGTAACT
AATTGGTCGATTTTTGCTTGCTTTCTTGTGTCTAGAGTATTTTTATGTCC
ATGGACTGAATGCTTGGTAGTTGAATCCAAATGAGCAACTTTTTTCCTTA
GAAATAAAAACACACTTTGAAACAACTATATTATACAAATTTCAAGATCT
TAAATTCAGAAAGTAtcaacttttgcaaaaaagtggaatTTGCTCAATTT
GATCAAAATCTACAGTCTGACTATAAATGATTGGCTCAGATGATATCACG
CCCTAATGTTCATGAAAAATAATCATTATACCGAACATCATTTGACCGAA
CAAATATAAGACATGACTACTGTTAGCTACAAATCATACGTTTACATTAC
AATTTCTTGAGCTGACCGCATTGTGGGCAAACCAATCACAATGCGGGCTG
CTTCCTTTCTAGTCCCAATCCACCTGTCCATGATTCGTTCTCTTTGTGAA
TTCAAACTACGGGGTCTGCTACTAGTACCCATATTTAAGTTTGCGCGCCC
ACCGATGGGCGGATGACGGGCGTTTCAACACCCGTGACACATGGTTTCAT
TGTCATTCCAGTGTGCCAACATCATGTTGcacatcaaaactaaaaaaacc
aTCTTACAATGTGTCTTTTAAGGGTAAATGGTATCTGTGCAAATCTGGAA
CAACCAAACATCCAGTACTTGGTCCTCCAACTTCCAATTCATACCAATGC
AACGGTTGTTCAACTTTATCAAagcaaattaatttttcttttggagGAGA
GTACAGATCTAAAGTTTCCAAATTAACTTGGAAGCATACAGTCCAGTTTG
TccgacttttttatttttttattttgaaagcaaaatttgatgACTTCGGA
ACTTTTTGGAAGCTGTCTGCAAAGTTTCCAATATGAATACGCTGAAAATT
ACGATTTTCTTACCAGGTTTTAACGAAATCCAACCTTCGAAtctttgata
aatttatttCCTAAGGCGGTATTAGACGATTTCGAACCTGAAAAATTTCC
AATATTGAATTCACAGGTGTTTCATGCCTTATAGAGCAACCGTATTTTTC
GGATTTAAGGAGTATtaaaatttagcattttttaaagtattttgatTAAT
AAGTTATGATACTTAGACATGATTCTCAGGCTAGAAAGTCACTAAACAGT
GAACCACTCGGCAGGTGCACAAAGAATGTACAATCATACAGGACCATCCT
ACCACTGATTAATAAGTTATGATACTTAGACATGATTCTCAGGCTAGAAA
GTCAATAATCAGTGAACCACTCGGGgctagaaaaaaaacaacaatattcA
TTATTCCTCAGACTTACACTTTTGTAATAAAGTTTTCTTCTCCACTTTtt
gtcttcttctttcttccaATACAAAAATAGATAAGCACATATGGTAGTCA
GCTTAAATTTTCTTCTCGACGAATATCAGCAAGTGGCGTACAAATCAAGG
TACAATCAAACAGGACCATCTTACTACTTTTTAAGTTATAATATTACTCT
CTGAATCGCTGTCTGAAACATTTTCCGAATTATTTGAATCATTGTCCAAC
CCGATGATGAATCTCTCCTCGTTATCGAGTCCACTGAAGTCAATTCTCCa
taatttctttttaacttttattgagcttttttcgatttttgcccATTTCG
TAGGCGTGGCATTATCTAATGCCTTATTCACGAGGTCCTGAACATCTTTA
ATTTTATAGGTGGCGTTTTTTTCTAGCAACATACTTCTGATTTAACTTGA
GTTCTGACAATTTCGGTAGGATTCAACTCCGAGAATGTGAATGTTTTCAA
TACAAAACCTTTCAGTGATTTTCTCCAAATTGAATTCTTTgggaatgaaa
attgatttgcTTTTTACGAGTAAAATTGGTCTTCAAAAGGGATTTTTCCC
CTCGACCAGCCTTGAGTCTCAGCTTTCTTCCATGATGTTTTTTGGGTTTT
GGACATTTTCCGTTTCCCGAGAACGGTAGCGAGCGTCCTTTATGTCATTG
AAATGAATGTCGATTCGAAATGATTGATTATAGTCGTTACATGTTTGATA
GGGGAAATGTTAgtgaataaaaatttttcacattggattcggacattaaa
agtaaaagtatttttgtctccgctgcaaattatatgGAGACAGGCATTTG
TATTTGGCGCGGAGTCCCTTTCCTTTGATTCACGTCTTACCCTTTTTGGA
ATTGTGCCAATTACTCATATTCCATCTTGGTCGTGCGCATTCTCTGTGTG
AGCTCCTCCTTTGTTTCATTCTGCTCTAATGCTTGCTCCAACAAAACTTT
GTTTATTTGGTTGAAAAAATCAGTTAATCGGGGTGGTGTGCATAACATTA
AAGCCTTTGGTCTTTCGTTTGTATTTACCGCTTTCTTTAATTTCTGGCGC
TAGtactttaggtgtacaaaccttcgcgagcagaaactttcgtgaggacg
aaaaatcgggaaaaagattttttcgcgagcataaactttcgcgaatgagg
catctttttataaaaaaattcaagttttCAGTGCGTGAAACCAGTGTTAC
GATTGTTCAAATGTACTCGTC
Run BLAST on NCBI

transcript from alignment at sc0000012:972801..975647-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00001965 ID=TCONS_00001965|Name=TCONS_00001965|organism=Clytia hemisphaerica|type=transcript|length=2847bp|location=Sequence derived from alignment at sc0000012:972801..975647- (Clytia hemisphaerica)
CTTTGATGAAAGGAGCTATGACATCCTTATGTAATCCTTCTATGGTAACT
AATTGGTCGATTTTTGCTTGCTTTCTTGTGTCTAGAGTATTTTTATGTCC
ATGGACTGAATGCTTGGTAGTTGAATCCAAATGAGCAACTTTTTTCCTTA
GAAATAAAAACACACTTTGAAACAACTATATTATACAAATTTCAAGATCT
TAAATTCAGAAAGTATCAACTTTTGCAAAAAAGTGGAATTTGCTCAATTT
GATCAAAATCTACAGTCTGACTATAAATGATTGGCTCAGATGATATCACG
CCCTAATGTTCATGAAAAATAATCATTATACCGAACATCATTTGACCGAA
CAAATATAAGACATGACTACTGTTAGCTACAAATCATACGTTTACATTAC
AATTTCTTGAGCTGACCGCATTGTGGGCAAACCAATCACAATGCGGGCTG
CTTCCTTTCTAGTCCCAATCCACCTGTCCATGATTCGTTCTCTTTGTGAA
TTCAAACTACGGGGTCTGCTACTAGTACCCATATTTAAGTTTGCGCGCCC
ACCGATGGGCGGATGACGGGCGTTTCAACACCCGTGACACATGGTTTCAT
TGTCATTCCAGTGTGCCAACATCATGTTGCACATCAAAACTAAAAAAACC
ATCTTACAATGTGTCTTTTAAGGGTAAATGGTATCTGTGCAAATCTGGAA
CAACCAAACATCCAGTACTTGGTCCTCCAACTTCCAATTCATACCAATGC
AACGGTTGTTCAACTTTATCAAAGCAAATTAATTTTTCTTTTGGAGGAGA
GTACAGATCTAAAGTTTCCAAATTAACTTGGAAGCATACAGTCCAGTTTG
TCCGACTTTTTTATTTTTTTATTTTGAAAGCAAAATTTGATGACTTCGGA
ACTTTTTGGAAGCTGTCTGCAAAGTTTCCAATATGAATACGCTGAAAATT
ACGATTTTCTTACCAGGTTTTAACGAAATCCAACCTTCGAATCTTTGATA
AATTTATTTCCTAAGGCGGTATTAGACGATTTCGAACCTGAAAAATTTCC
AATATTGAATTCACAGGTGTTTCATGCCTTATAGAGCAACCGTATTTTTC
GGATTTAAGGAGTATTAAAATTTAGCATTTTTTAAAGTATTTTGATTAAT
AAGTTATGATACTTAGACATGATTCTCAGGCTAGAAAATCACTAAACAGT
GAACCACTCGGCAGGTGCACAAAGAATGTACAATCATACAGGACCATCCT
ACCACTGATTAATAAGTTATGATACTTAGACATGATTCTCAGGCTAGAAA
ATCACTAAACAGTGAACCACTCGGCAGGTGCACAAGGAATGTACAATCAT
ACAGGACCATCCTACCACTGATTAATAAGTTATGATACTTAGACATGATT
CTCAGGCTAGAAAGTCACTAAACAGTGAACCACTCGGCAGGTGCACAAAG
AATGTACAATCATACAGGACCATCCTACCACTGATTAATAAGTTATGATA
CTTAGACATGATTCTCAGGCTAGAAAGTCAATAATCAGTGAACCACTCGG
GGCTAGAAAAAAAACAACAATATTCATTATTCCTCAGACTTACACTTTTG
TAATAAAGTTTTCTTCTCCACTTTTTGTCTTCTTCTTTCTTCCAATACAA
AAATAGATAAGCACATATGGTAGTCAGCTTAAATTTTCTTCTCGACGAAT
ATCAGCAAGTGGCGTACAAATCAAGGTACAATCAAACAGGACCATCTTAC
TACTTTTTAAGTTATAATATTACTCTCTGAATCGCTGTCTGAAACATTTT
CCGAATTATTTGAATCATTGTCCAACCCGATGATGAATCTCTCCTCGTTA
TCGAGTCCACTGAAGTCAATTCTCCATAATTTCTTTTTAACTTTTATTGA
GCTTTTTTCGATTTTTGCCCATTTCGTAGGCGTGGCATTATCTAATGCCT
TATTCACGAGGTCCTGAACATCTTTAATTTTATAGGTGGCGTTTTTTTCT
AGCAACATACTTCTGATTTAACTTGAGTTCTGACAATTTCGGTAGGATTC
AACTCCGAGAATGTGAATGTTTTCAATACAAAACCTTTCAGTGATTTTCT
CCAAATTGAATTCTTTGGGAATGAAAATTGATTTGCTTTTTACGAGTAAA
ATTGGTCTTCAAAAGGGATTTTTCCCCTCGACCAGCCTTGAGTCTCAGCT
TTCTTCCATGATGTTTTTTGGGTTTTGGACATTTTCCGTTTCCCGAGAAC
GGTAGCGAGCGTCCTTTATGTCATTGAAATGAATGTCGATTCGAAATGAT
TGATTATAGTCGTTACATGTTTGATAGGGGAAATGTTAGTGAATAAAAAT
TTTTCACATTGGATTCGGACATTAAAAGTAAAAGTATTTTTGTCTCCGCT
GCAAATTATATGGAGACAGGCATTTGTATTTGGCGCGGAGTCCCTTTCCT
TTGATTCACGTCTTACCCTTTTTGGAATTGTGCCAATTACTCATATTCCA
TCTTGGTCGTGCGCATTCTCTGTGTGAGCTCCTCCTTTGTTTCATTCTGC
TCTAATGCTTGCTCCAACAAAACTTTGTTTATTTGGTTGAAAAAATCAGT
TAATCGGGGTGGTGTGCATAACATTAAAGCCTTTGGTCTTTCGTTTGTAT
TTACCGCTTTCTTTAATTTCTGGCGCTAGTACTTTAGGTGTACAAACCTT
CGCGAGCAGAAACTTTCGTGAGGACGAAAAATCGGGAAAAAGATTTTTTC
GCGAGCATAAACTTTCGCGAATGAGGCATCTTTTTATAAAAAAATTCAAG
TTTTCAGTGCGTGAAACCAGTGTTACGATTGTTCAAATGTACTCGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001013XLOC_001013Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00001965-exon-sc0000012-1575043694:974469..975647TCONS_00001965-exon-sc0000012-1575043694:974469..975647Clytia hemisphaericaexon
TCONS_00001965-exon-sc0000012-1575043694:972801..974242TCONS_00001965-exon-sc0000012-1575043694:972801..974242Clytia hemisphaericaexon
TCONS_00001965-exon-sc0000012-1510915933:974469..975647TCONS_00001965-exon-sc0000012-1510915933:974469..975647Clytia hemisphaericaexon
TCONS_00001965-exon-sc0000012-1510915933:972801..974242TCONS_00001965-exon-sc0000012-1510915933:972801..974242Clytia hemisphaericaexon
TCONS_00001965-exon-sc0000012-1491911889:974469..975647TCONS_00001965-exon-sc0000012-1491911889:974469..975647Clytia hemisphaericaexon
TCONS_00001965-exon-sc0000012-1491911889:972801..974242TCONS_00001965-exon-sc0000012-1491911889:972801..974242Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000012supercontigsc0000012:972801..975647 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0883072	0.319037	0.263247	0.257625	0.0328597	0.327403	0.079134	0.00910948	0.0112836	0	0	0	0.0422276	0	0	0.0174275	0.069678	0	3.09214e-09	0.325549	0.0305882	0.0772127	0.0395323	0.486135	0.367808	0	0	0	1.20112e-08
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00001965 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top