TCONS_00002104 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002104
Unique NameTCONS_00002104
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002104 ID=TCONS_00002104|Name=TCONS_00002104|organism=Clytia hemisphaerica|type=transcript|length=1722bp
GGAAGATAAAAATTTGTTCGAAATCACATACTCTATAACGTGAAACAAAC
ACGGTTCTGTACGTAATATGAATATCAAAAAGACTTACGTCACAGCTAAG
CCGATAAGCTTTTAGGAAAAAAACGTGGGTTTGCATCCATAAtccaaaaa
tgattattttcccTAGTTCCCAGCCTCTTTTTCAAGCAGTAATCAAAAGT
ATAAATTTGACAGCTAAACAGTTGATCAGTCATCACATCGATGATCATCT
CAACGAGGTAGACATTAAAAGACGAAATGAAAGTAAATTACCTGTTTTTG
TCACTTCTTTTCGTGGTAACACGAAGCGCTCTTGGGAGCTGGCATAAATA
TACTCATCATGGCTCAGGTAACTTGGTAAGCGGTGTAGCTGTTATGCAAT
CACGAAATACCAAACTGTTTGTTGTAGGAAGACATGGTCATTTATGGGAA
AGGGTTTATACCAGTTCTTGGAAATGGGTGGATCATGGCGTACCGCCCTT
TCTCACTGGGTTCGACAGATTGAAATCTATGCCATGCGTTCTAATGGATG
GAAAATTGTTCATTGTCACAAACGATGGAATTTTGGTCGAGCATGTTTAT
GGCACGGACGGTAGATGGCATTGGGTTGACCACGGAAAACCAACAGATGA
AAATGGCCGTATCTTAGCAACCCTTGATGCAACCAAATGCGTAGCGTCCC
AGGGTAACAATAGACATCGAGTGTTTGTACTTGGCAGAGATAATCGTCTT
TATCAACGATGGTGGGTTAATGGTGCATGGAATTGGAGAAGCCATTACTT
TTCTTTTCATCGACAGATCTGGCCAGGTGGTTTCGATGTAGGATTTACGG
GTACACATGTTTACGCTGTTGGAACCAATGGAGAACTTTATCGTTTCGAG
ATGAGCCCTAATGGTAACCAAAAATTTGACTGGGATCATTCTCTTGGTAA
ACCAGACCACGGATCAACCATTATTCGAAGTTTGTCTGTTAACACCATCA
ATGGTGCAACTAGAGTCTTAGTTGTATCTGCCACTAATCATATTCACGAA
TGGAGGGGCACTGGCGGTAATCCGAATAGCTTTTCATCCGGTACTCAGCC
GGCTGGGGTCAGTTCCTATGGTCCGCAGATGATTCTTTCCAAAGAGTTTC
AGCACACTTGTGGAAGAGGAAATACACCTACGAATATGGTAATGATTAAA
ACACCGCATACAATCTACGCCATGACCATTCCGAATTTTGGTGGATTCGA
TCCTCCTGTGGCTATTGGTACTAATAGCAATTCATTTATTGATGCGATGC
CAGCCGTTTTGCAGAATCCGAGATGTCCTAAAGTATTCCTTGTAACAAGC
AATAAAAAATTAGTGGAATTTTACGTTTAATGAATTTATACGTAGTTTGT
TGTTAGATTAATTTATAACTATTGAAATAGTAAGAAAATCTGGGTAtact
aaaatatttaaaattattttactcGCCGTACTAATTTCTTTTTGCAATTT
ATAGACCGGATGGTGCGATTAAGTGACCCAGTAGTATATGCATATGactt
tgcttaggcggactgtaaaacagtctgCCAGATTTTAGTTGNTGCGATTA
AGTGGCCCAGTAGTATATGCATATGactttgcttaggcggactgtaaaac
agtctgccagattttagttgattttggaaggtaaaaatagTATGAAGCAA
TGTCTTTATTTgggaataaggg
Run BLAST on NCBI

protein sequence of TCONS_00002104-protein

>TCONS_00002104-protein ID=TCONS_00002104-protein|Name=TCONS_00002104-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MKVNYLFLSLLFVVTRSALGSWHKYTHHGSGNLVSGVAVMQSRNTKLFVV
GRHGHLWERVYTSSWKWVDHGVPPFLTGFDRLKSMPCVLMDGKLFIVTND
GILVEHVYGTDGRWHWVDHGKPTDENGRILATLDATKCVASQGNNRHRVF
VLGRDNRLYQRWWVNGAWNWRSHYFSFHRQIWPGGFDVGFTGTHVYAVGT
NGELYRFEMSPNGNQKFDWDHSLGKPDHGSTIIRSLSVNTINGATRVLVV
SATNHIHEWRGTGGNPNSFSSGTQPAGVSSYGPQMILSKEFQHTCGRGNT
PTNMVMIKTPHTIYAMTIPNFGGFDPPVAIGTNSNSFIDAMPAVLQNPRC
PKVFLVTSNKKLVEFYV
Run BLAST on NCBI

transcript from alignment at sc0000018:120667..123817-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002104 ID=TCONS_00002104|Name=TCONS_00002104|organism=Clytia hemisphaerica|type=transcript|length=3151bp|location=Sequence derived from alignment at sc0000018:120667..123817- (Clytia hemisphaerica)
GGAAGATAAAAATTTGTTCGAAATCACATACTCTATAACGTGAAACAAAC
ACGGTTCTGTACGTAATATGAATATCAAAAAGACTTACGTCACAGCTAAG
CCGATAAGCTTTTAGGAAAAAAACGTGGGTTTGCATCCATAATCCAAAAA
TGATTATTTTCCCTAGTTCCCAGCCTCTTTTTCAAGCAGTAATCAAAAGT
ATAAATTTGACAGCTAAACAGTTGATCAGTCATCACATCGATGATCATCT
CAACGAGGTAGACATTAAAAGACGAAATGAAAGTAAATTACCTGTTTTTG
TCACTTCTTTTCGTGGTAACACGAAGCGCTCTTGGGAGCTGGCATAAATA
TACTCATCATGGCTCAGGTAACTTGGTAAGCGGTGTAGCTGTTATGCAAT
CACGAAATACCAAACTGTTTGTTGTAGGAAGACATGGTCATTTATGGGAA
AGGGTTTATACCAGTTCTTGGAAATGGGTGGATCATGGCGTACCGCCCTT
TCTCACTGGGTTCGACAGATTGAAATCTATGCCATGCGTTCTAATGGATG
GAAAATTGTTCATTGTCACAAACGATGGTAAGAGACTTTAAGTCCCAGCA
GTGTTGTAATTTGCTCCGGGTATCTCAATACCCTTTTGTTTATCAAAGAT
TTTGCTTTTTAGCATGCCTTCATCCAGTTGGGTTGGCTCACAATTACAGC
AAAGACTCAGCTCAAGATCATTTTCAGAGATCATTCCTTTCCCAAATGTG
TTATTGACAAGTATAGTTTTATTCACGGGATAGTAAGATATAACTACCCC
CTTCTCGCAGACCCGGTAGGATTCTTTCAGCCAGTGGGGATAAAAATAAC
GGATAAAAACTTGATGGGGATTGATATTCCAATATTTTTTATGACTGAGG
ATTTCAATTCCTTTGTCTTCAAGTCAGAAAATTCAGTAGGAATGGGAAAA
ATAGCACAATATTTTGCAGTGAGGATTGGTTTTTTGGTTATTTTCGGTGG
GTTCAAAAATTAGAGGATAATTTTCCACCGGGACGATATTTTGGCCAAAT
TTTCCAGTGGGTCTGTGAGAAGGGGTTGTTGAATAAGATTATGATATATA
GGAGTATACGTTATGAAGAGCTATCCCCTTCATTTAGGAATTTTGGTCGA
GCATGTTTATGGCACGGACGGTAGATGGCATTGGGTTGACCACGGAAAAC
CAACAGATGAAAATGGCCGTATCTTAGCAACCCTTGATGCAACCAAATGC
GTAGCGTCCCAGGGTAACAATAGACATCGAGTGTTTGTACTTGGCAGAGA
TAATCGTCTTTATCAACGATGGTGGGTTAATGGTGCATGGAATTGGAGAA
GCCATTACTTTTCTTTTCATCGACAGGTAAGATTCAAAGGATTTCCTTTT
CATTAGATTTGCTCCCGTCAGGGGGGGGTACTAGGTTTGCAAGGTGACGG
ATATGTCCGGGCCAAAAATCGAAAATCGATCCTTAGAGTGGGAAAAAGTG
GCGTTTTTTTTTACCCTTGGAGAGACTTTTCTTAAAATATTTTGTAGATT
TTCGCTCGATTTTTGTCCAAATTTTTTAAAATCACGACCCTTTGAGAAAG
GAAATTTTGATTTGTGTGAATTTTGGACCCTTACGGAGATTCAATCAATT
TGTTTTTTAATATTTTATGTACCCCTTTGAGAGACTTTCAAGGTCGTGAA
AAAAGGACCCTTATGGCTTGCACATACCCAGCACCTAAGTACTCCCCTCA
GGATTTGCTGTTTTGTTGAAGTCGTTTATAATCCATGTAATACAGCAATA
TTGGTGTTATGTAATTATACAATCATCGTGACGGGATAGTTTGTTTTTTT
GCGTTGCAATAATCACTTCGTTTGCTGGATTAATCGTCTGTCATGCTAGA
CGAGCAGTTTATGAATGAATACCGGGTGACCCAGAAAAAACGTTACTGCA
TTGATTTATGCGCTTACAAATTGACGTCTTTCCATACAGACTTTCTAAAA
TTTCAGACAAAGAAGCTTAACAGCATTTTGCTTAGTTTGCAAAAACTTCA
GGAGGATATCTCTACTGGATATTTTTTTGCGCACAAAATTCTATTAAAAG
GAATTTTGATAGAGTATTTTCTGCTGATAGCACATCATAATCTAAGGTTT
TGCTGTAGTCTTTTCATTGTTTTCACGGGGTACACGACCAGCTTTCAGAA
CTTTAAAGGTTTGGACATTCTAACCCTTTCAAAACTTTAATTTAGATCTG
GCCAGGTGGTTTCGATGTAGGATTTACGGGTACACATGTTTACGCTGTTG
GAACCAATGGAGAACTTTATCGTTTCGAGATGAGCCCTAATGGTAACCAA
AAATTTGACTGGGATCATTCTCTTGGTAAACCAGACCACGGATCAACCAT
TATTCGAAGTTTGTCTGTTAACACCATCAATGGTGCAACTAGAGTCTTAG
TTGTATCTGCCACTAATCATATTCACGAATGGAGGGGCACTGGCGGTAAT
CCGAATAGCTTTTCATCCGGTACTCAGCCGGCTGGGGTCAGTTCCTATGG
TCCGCAGATGATTCTTTCCAAAGAGTTTCAGCACACTTGTGGAAGAGGAA
ATACACCTACGAATATGGTAATGATTAAAACACCGCATACAATCTACGCC
ATGACCATTCCGAATTTTGGTGGATTCGATCCTCCTGTGGCTATTGGTAC
TAATAGCAATTCATTTATTGATGCGATGCCAGCCGTTTTGCAGAATCCGA
GATGTCCTAAAGTATTCCTTGTAACAAGCAATAAAAAATTAGTGGAATTT
TACGTTTAATGAATTTATACGTAGTTTGTTGTTAGATTAATTTATAACTA
TTGAAATAGTAAGAAAATCTGGGTATACTAAAATATTTAAAATTATTTTA
CTCGCCGTACTAATTTCTTTTTGCAATTTATAGACCGGATGGTGCGATTA
AGTGACCCAGTAGTATATGCATATGACTTTGCTTAGGCGGACTGTAAAAC
AGTCTGCCAGATTTTAGTTGNTGCGATTAAGTGGCCCAGTAGTATATGCA
TATGACTTTGCTTAGGCGGACTGTAAAACAGTCTGCCAGATTTTAGTTGA
TTTTGGAAGGTAAAAATAGTATGAAGCAATGTCTTTATTTGGGAATAAGG
G

Coding sequence (CDS) from alignment at sc0000018:120667..123817-

>TCONS_00002104 ID=TCONS_00002104|Name=TCONS_00002104|organism=Clytia hemisphaerica|type=CDS|length=3312bp|location=Sequence derived from alignment at sc0000018:120667..123817- (Clytia hemisphaerica)
ATCTGGCCAGGTGGTTTCGATGTAGGATTTACGGGTACACATGTTTACGC
TGTTGGAACCAATGGAGAACTTTATCGTTTCGAGATGAGCCCTAATGGTA
ACCAAAAATTTGACTGGGATCATTCTCTTGGTAAACCAGACCACGGATCA
ACCATTATTCGAAGTTTGTCTGTTAACACCATCAATGGTGCAACTAGAGT
CTTAGTTGTATCTGCCACTAATCATATTCACGAATGGAGGGGCACTGGCG
GTAATCCGAATAGCTTTTCATCCGGTACTCAGCCGGCTGGGGTCAGTTCC
TATGGTCCGCAGATGATTCTTTCCAAAGAGTTTCAGCACACTTGTGGAAG
AGGAAATACACCTACGAATATGGTAATGATTAAAACACCGCATACAATCT
ACGCCATGACCATTCCGAATTTTGGTGGATTCGATCCTCCTGTGGCTATT
GGTACTAATAGCAATTCATTTATTGATGCGATGCCAGCCGTTTTGCAGAA
TCCGAGATGTCCTAAAGTATTCCTTGTAACAAGCAATAAAAAATTAGTGG
AATTTTACGTTTAAGAATTTTGGTCGAGCATGTTTATGGCACGGACGGTA
GATGGCATTGGGTTGACCACGGAAAACCAACAGATGAAAATGGCCGTATC
TTAGCAACCCTTGATGCAACCAAATGCGTAGCGTCCCAGGGTAACAATAG
ACATCGAGTGTTTGTACTTGGCAGAGATAATCGTCTTTATCAACGATGGT
GGGTTAATGGTGCATGGAATTGGAGAAGCCATTACTTTTCTTTTCATCGA
CAGATGAAAGTAAATTACCTGTTTTTGTCACTTCTTTTCGTGGTAACACG
AAGCGCTCTTGGGAGCTGGCATAAATATACTCATCATGGCTCAGGTAACT
TGGTAAGCGGTGTAGCTGTTATGCAATCACGAAATACCAAACTGTTTGTT
GTAGGAAGACATGGTCATTTATGGGAAAGGGTTTATACCAGTTCTTGGAA
ATGGGTGGATCATGGCGTACCGCCCTTTCTCACTGGGTTCGACAGATTGA
AATCTATGCCATGCGTTCTAATGGATGGAAAATTGTTCATTGTCACAAAC
GATGATCTGGCCAGGTGGTTTCGATGTAGGATTTACGGGTACACATGTTT
ACGCTGTTGGAACCAATGGAGAACTTTATCGTTTCGAGATGAGCCCTAAT
GGTAACCAAAAATTTGACTGGGATCATTCTCTTGGTAAACCAGACCACGG
ATCAACCATTATTCGAAGTTTGTCTGTTAACACCATCAATGGTGCAACTA
GAGTCTTAGTTGTATCTGCCACTAATCATATTCACGAATGGAGGGGCACT
GGCGGTAATCCGAATAGCTTTTCATCCGGTACTCAGCCGGCTGGGGTCAG
TTCCTATGGTCCGCAGATGATTCTTTCCAAAGAGTTTCAGCACACTTGTG
GAAGAGGAAATACACCTACGAATATGGTAATGATTAAAACACCGCATACA
ATCTACGCCATGACCATTCCGAATTTTGGTGGATTCGATCCTCCTGTGGC
TATTGGTACTAATAGCAATTCATTTATTGATGCGATGCCAGCCGTTTTGC
AGAATCCGAGATGTCCTAAAGTATTCCTTGTAACAAGCAATAAAAAATTA
GTGGAATTTTACGTTTAAGAATTTTGGTCGAGCATGTTTATGGCACGGAC
GGTAGATGGCATTGGGTTGACCACGGAAAACCAACAGATGAAAATGGCCG
TATCTTAGCAACCCTTGATGCAACCAAATGCGTAGCGTCCCAGGGTAACA
ATAGACATCGAGTGTTTGTACTTGGCAGAGATAATCGTCTTTATCAACGA
TGGTGGGTTAATGGTGCATGGAATTGGAGAAGCCATTACTTTTCTTTTCA
TCGACAGATGAAAGTAAATTACCTGTTTTTGTCACTTCTTTTCGTGGTAA
CACGAAGCGCTCTTGGGAGCTGGCATAAATATACTCATCATGGCTCAGGT
AACTTGGTAAGCGGTGTAGCTGTTATGCAATCACGAAATACCAAACTGTT
TGTTGTAGGAAGACATGGTCATTTATGGGAAAGGGTTTATACCAGTTCTT
GGAAATGGGTGGATCATGGCGTACCGCCCTTTCTCACTGGGTTCGACAGA
TTGAAATCTATGCCATGCGTTCTAATGGATGGAAAATTGTTCATTGTCAC
AAACGATGATCTGGCCAGGTGGTTTCGATGTAGGATTTACGGGTACACAT
GTTTACGCTGTTGGAACCAATGGAGAACTTTATCGTTTCGAGATGAGCCC
TAATGGTAACCAAAAATTTGACTGGGATCATTCTCTTGGTAAACCAGACC
ACGGATCAACCATTATTCGAAGTTTGTCTGTTAACACCATCAATGGTGCA
ACTAGAGTCTTAGTTGTATCTGCCACTAATCATATTCACGAATGGAGGGG
CACTGGCGGTAATCCGAATAGCTTTTCATCCGGTACTCAGCCGGCTGGGG
TCAGTTCCTATGGTCCGCAGATGATTCTTTCCAAAGAGTTTCAGCACACT
TGTGGAAGAGGAAATACACCTACGAATATGGTAATGATTAAAACACCGCA
TACAATCTACGCCATGACCATTCCGAATTTTGGTGGATTCGATCCTCCTG
TGGCTATTGGTACTAATAGCAATTCATTTATTGATGCGATGCCAGCCGTT
TTGCAGAATCCGAGATGTCCTAAAGTATTCCTTGTAACAAGCAATAAAAA
ATTAGTGGAATTTTACGTTTAAGAATTTTGGTCGAGCATGTTTATGGCAC
GGACGGTAGATGGCATTGGGTTGACCACGGAAAACCAACAGATGAAAATG
GCCGTATCTTAGCAACCCTTGATGCAACCAAATGCGTAGCGTCCCAGGGT
AACAATAGACATCGAGTGTTTGTACTTGGCAGAGATAATCGTCTTTATCA
ACGATGGTGGGTTAATGGTGCATGGAATTGGAGAAGCCATTACTTTTCTT
TTCATCGACAGATGAAAGTAAATTACCTGTTTTTGTCACTTCTTTTCGTG
GTAACACGAAGCGCTCTTGGGAGCTGGCATAAATATACTCATCATGGCTC
AGGTAACTTGGTAAGCGGTGTAGCTGTTATGCAATCACGAAATACCAAAC
TGTTTGTTGTAGGAAGACATGGTCATTTATGGGAAAGGGTTTATACCAGT
TCTTGGAAATGGGTGGATCATGGCGTACCGCCCTTTCTCACTGGGTTCGA
CAGATTGAAATCTATGCCATGCGTTCTAATGGATGGAAAATTGTTCATTG
TCACAAACGATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001102XLOC_001102Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002104-proteinTCONS_00002104-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002104-exon-sc0000018-1575043694:123241..123817TCONS_00002104-exon-sc0000018-1575043694:123241..123817Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1575043694:122442..122680TCONS_00002104-exon-sc0000018-1575043694:122442..122680Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1575043694:120667..121572TCONS_00002104-exon-sc0000018-1575043694:120667..121572Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1510915933:123241..123817TCONS_00002104-exon-sc0000018-1510915933:123241..123817Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1510915933:122442..122680TCONS_00002104-exon-sc0000018-1510915933:122442..122680Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1510915933:120667..121572TCONS_00002104-exon-sc0000018-1510915933:120667..121572Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1491911889:123241..123817TCONS_00002104-exon-sc0000018-1491911889:123241..123817Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1491911889:122442..122680TCONS_00002104-exon-sc0000018-1491911889:122442..122680Clytia hemisphaericaexon
TCONS_00002104-exon-sc0000018-1491911889:120667..121572TCONS_00002104-exon-sc0000018-1491911889:120667..121572Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000018supercontigsc0000018:120667..123817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.187589	0.137197	0.0530994	0.0259748	0.252974	0.199903	0.542644	0.395124	0.0987985	0.685316	0.0237566	0.327949	1.29438	3.19051	0.0665745	0.0142889	0	0.378888	4.13778	22.771	0.0453429	0.2654	0.3764	0.708847	2.11476	14.6271	1.63979	0.549028	2.26427	0.53033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002104 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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