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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002129 ID=TCONS_00002129|Name=TCONS_00002129|organism=Clytia hemisphaerica|type=transcript|length=1502bp
CTTGGTGACGGTGCCCCATTTTGCTTAAACagACTGTGCGAGCAtttcaa
ataacaataatggtgtCATTTTCAATGTAATAACAGATAGCTATTAACTG
ATAACAGATTTTCAAAGTATGAAAAACTTCGTTTCGGAATAAACCATGTG
TGATGCCGAGAGCGCCACCAGATACAAATCGGATGAAATTATCTCCCACT
AGTGGACCCATGGCGTATAACGACTTCCGGCCGCGGCATTCATACGTCAA
AAGGTCAGTGTCTAaacagtttgtttttatattaaATTCTTCCTCTGGAT
CCTCGCGTAGTAAATGCTCCTCTTTGATGAAGTCCAGATTCGGTTTTGAT
CCAACATGGATGATGACTCGGCTCACGTGAACTTTGAACGAGGCACCGCC
CTTTTTACCACATGGCTCAATAAGTACTTCCTTATTGGGTAAGATTTCGG
CCAATCGGTGTTGAGGAAGTGGCGTGTAAAATTCACATTTTGATTTGAGC
TGTATCAGcgattttaatttcaaatagtCTGCGTAGGCAGACGATAATTG
GTTTAGAACGAGATTAGGGTCTTTAGGCGAACGTCTGAACACGTGTATGA
CTGGTATCTGTCGTGAGATGAGGTAAAGGACTGCGTCTGCTGCAACTAGC
CCACATCCTACTACAACCACAGGGCATTTGTGTGTCTGGAGTCGATCGAA
ATCTGGGAAGTGGTGATGTACGAAGGTGAAGTCTTCACCAGGGATCTCGA
GTTTGCGTGGATTATTGAAAGCTCCGGTTGCCATAACAATGTTGTCCGCT
TTCACGGTATACGTTTCACCTGTTTGTTGGTCTGTATATTGAACGCCTTC
CACCGTCCATTGTGACGTGTTGGATAAGCTCTGTGAGATGGATTTGACGT
AAACGTTATCAACGAAAAATGATGATAAGCCCATATATTTGACATAGTCG
GAATAATAAAGCCCTATATAATAAGGGTTTGTACGCTCTGGATGTACACC
ACCGACGCTGGGAACTTTTGGTAGATTACCAAGACTCAATTGTTTCTGTT
CATACCATTCATTGAATGTATATCCAGGTAATTCCAACCAGTTTGCCAAA
CTAACAGTCAATTGTGAGTTAATCATATTATGCCATGAACCACCTGGTGG
ACCGAATCCAAGAACAACATGTCGGACTTCATTTTCGGGTAAATATTTCC
ATTCGATAACCGATTCGNCGGTGGACCAAATCCAAGAACAACATGTCGGA
CTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTCGGGTTTGGTC
AACATATCAGCATTTGGATGGTATAAATGGTCGAAGAGAATTGATACAGG
ATTCATGGTTCGTGAATCGAACAAACCTTCGCTCAGCCATTGTAAATCCT
GCGGAAATGAAGAGAATCAAATTCTTTATTACATAGAAAAAGACAACTAC
AGATGAACATTCTTCAAGTGatataaaaatcaaatatgAATTTAAAAAGT
TC Run BLAST on NCBI transcript from alignment at sc0000018:321428..325689- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002129 ID=TCONS_00002129|Name=TCONS_00002129|organism=Clytia hemisphaerica|type=transcript|length=4262bp|location=Sequence derived from alignment at sc0000018:321428..325689- (Clytia hemisphaerica)
CTTGGTGACGGTGCCCCATTTTGCTTAAACAGGTTAAAATTTGAAATACC
CTTTACTTTATACCCTCAATATGACAATAATACCCTTTCGAAAAAGTCTC
AAAATCATAATCTGATTGAACGTTTTTTTTTCTCTAGTACTTCCTAGTAC
TTTGGATGAGGGTCAAGTATTCTTAACTTATTAACACTTGACTTTTTTAC
AAACATGAGAAATGATCAATTTGAGAGTTTTGGACTTTTGAGTGAACATT
TGGGTTAAAATTACATTTCTTCCTCAAAGCTTTCAATTTATCTCTAACAA
AGAAAGCAGTTTTCTTCTGTTAACCAAATACGAAATAACTTATCAAATAA
CTTATTCTTATCAAATTCTGTGAAATTCACACTAGAGGGTATTCTTAGGG
TATTCTAAAGATTTGGCCAATTTTCACCCTGATATTCTTATAGAAGATAT
TCTTATAAAAAAAGCGTGAACCAGCCACGTGTGGTCGAGTCCCACTAAAG
ATGCTACAGATCCTAAAGGTTAGCCTATTACCTAATGGACGGGGTTGGTG
GGATTAGCAGGGTAGGTAGAAAAATACAATAAGACTAGGGAGGGGAGTTT
TCCTTAGTGGAAAGCTTGTAAAAGGCGACTAACAAAAAAAAACTACTTCA
AAATTTCGCTGCTCAAATAAAAAAGTGAACCAAGGTTTAGCATTTTGCTC
TTTAAGTTCCGTTTTCTTTTTACTTTCTGTTATTTTACCAGGTTAAATTT
TCTTGTAGTTGTTGTTTTTTAATTTTCTTTTGGGCTGAAATGGAATGAAA
TATGAGATTGGATTAAAGAAAAAAAAACTAATTAGTTGAATAGTGCTTAA
AACCAGAACCTGTTACTCGAACTTTCCGAACCGACTTTTCACTCAAACTT
ATTGAACCCCGGAGGGGCACTCGATTTCTAAACGGCGGCATGTGCCGCCG
AAAATTGCCTTTCAAAATCGGACCCTTATGCAGTTCTTGAGCAGTGAAAA
GGTACCCTTACAGTGCATTTTACCGAACGTTTCTGACCCTTACAGTGCAG
CTTGATTTCATATCTTATTTTGCTGAAGCCATCTGAAAATGAGTCTGAGA
TGTCGACACAATAATGTGAATTAAAACTGTAAAGATACACCAGATTTTTA
CTGTCAGACTTGCAATTAAGTAGTTCTCGAACACACCCTTACAGTGTATC
CAGCTAAAAGAACACCCTTGTAGTGCACTCTATCAAAGTACACCCTTACA
GTGCATTTCAAGGGTCTCGAAAAATCGAACCATATGAGTGCCCCTGTTCG
AGTAATAAGGTCTGAAAAATTTGATTTTGGAAGGTAGAAACCAAATGTCA
ACTCATTAAGAAAATACAAGCTTTTTTTCGTCAACCAATATATATTTTCT
GTTTTTTAAAATTTTCAATTTTCGTCAAAAAAGTGATGTTACTACATAAT
ACAATGTCGTCATTAAAAAAGAAAAGAAAAAGAAAAAGAAACTGTTTATG
AAAAATCCTCTTCAAAAAGTATGTTCGCTTTAAGCTTGAGGTACCTTTGA
ACTTTATGTTTGTTCGTAATATAAGAGACATTATATTCCGACTAGGCTTA
AGGGGTTCTTATCCAACGCTTGCGCCGAAATTGAGCATACAGTGTGTCCC
AAAAAAGTAAACAAATTATTATATTAAAGTCATCATTATATATGCGAAGT
TTTATGACTTAGTTTACTTGTTTACTTTCAATCTCCAAAAATTAATTTAG
TCATCTTGGGAATTGAATATCTAATGATTGAACAAAGAATTCTAATCTTC
AATTATTCCATTCCCCAGTTTAGATGACGAGTTTTGTGTTTTGAGGATTT
TCCTTTATATAAAAATATGCCCGCTTTTTTTTGGGACATACTGTACATTC
TTGTTCTCACTCGTTATAGAGAGACGAAAGCTTTCCAATAAAATTTAAGC
TTCTGCGAATATTACTTTTTGAAGGATCTCCTGTTTTTATAGTTTTTAAA
ATTCAGATACCATAATATCGAAAAATATTCATGCACATTTCTATTTACAA
TACAATAGTTCTATTTATACTGAGACGATTAATTTGTCTGAGACGAGCAA
TTTAGAAAATGAGCATTATGGAGGAGTGTACTTTTTATTCATGTTTCAAT
AAATAGGATTTCCTCCACAGATCACATTTTACAAACTACTCGTCTCAGAC
GATTTTTCCGTCTCAGTATAAATGGAACTAATGTTTAAAAAAAGTGTAAA
ATTGGTTGTTCTTGTTTAATAAATTGGGAATAAATTACTGCGTGTCTTTA
ACTTAATAATATAGCTCATAATTTCTACGACTACTAATTTTAATAATACC
TTGAAATTAACTCATTTATTTTTCTACAGACTGTGCGAGCATTTCAAATA
ACAATAATGGTGTCATTTTCAATGTAATAACAGATAGCTATTAACTGATA
ACAGATTTTCAAAGTATGAAAAAGTAAGTTTGTTCAATCCTTATTACCAT
ACTGCATTAATATCCCAACTTCGTGTTTCAAATCCCCATATGCCCTAACC
TTTATATGTAAACCCCACCTATCGCCTCCAATTTTAAGGAGACCCAAAAT
TTTCACTTTTAGATTTAAAGATTATATCCAAAAAGATATATTTATTTACA
TCTATCTATCTACATATATTGAAAGTTCTCTAACTACTTAGCTCATTTCC
CCTACAGCTTAAGAGAGCCTGTCTACAGAGCATCCTCGAAAGAAATGAGA
ACCTGTTTTTAAAGTATCCTTTAATCACAAAGACCAGATATTTCAACACG
TTTTTTACATCAAAAAGGTGAACCTGTATTTCAACCATCCTTGGAAGAAA
AATGACCAGCTGTTTTTCACACATCTTCATTTTCAGCTTCGTTTCGGAAT
AAACCATGTGTGATGCCGAGAGCGCCACCAGATACAAATCGGATGAAATT
ATCTCCCACTAGTGGACCCATGGCGTATAACGACTTCCGGCCGCGGCATT
CATACGTCAAAAGGTCAGTGTCTAAACAGTTTGTTTTTATATTAAATTCT
TCCTCTGGATCCTCGCGTAGTAAATGCTCCTCTTTGATGAAGTCCAGATT
CGGTTTTGATCCAACATGGATGATGACTCGGCTCACGTGAACTTTGAACG
AGGCACCGCCCTTTTTACCACATGGCTCAATAAGTACTTCCTTATTGGGT
AAGATTTCGGCCAATCGGTGTTGAGGAAGTGGCGTGTAAAATTCACATTT
TGATTTGAGCTGTATCAGCGATTTTAATTTCAAATAGTCTGCGTAGGCAG
ACGATAATTGGTTTAGAACGAGATTAGGGTCTTTAGGCGAACGTCTGAAC
ACGTGTATGACTGGTATCTGTCGTGAGATGAGGTAAAGGACTGCGTCTGC
TGCAACTAGCCCACATCCTACTACAACCACAGGGCATTTGTGTGTCTGGA
GTCGATCGAAATCTGGGAAGTGGTGATGTACGAAGGTGAAGTCTTCACCA
GGGATCTCGAGTTTGCGTGGATTATTGAAAGCTCCGGTTGCCATAACAAT
GTTGTCCGCTTTCACGGTATACGTTTCACCTGTTTGTTGGTCTGTATATT
GAACGCCTTCCACCGTCCATTGTGACGTGTTGGATAAGCTCTGTGAGATG
GATTTGACGTAAACGTTATCAACGAAAAATGATGATAAGCCCATATATTT
GACATAGTCGGAATAATAAAGCCCTATATAATAAGGGTTTGTACGCTCTG
GATGTACACCACCGACGCTGGGAACTTTTGGTAGATTACCAAGACTCAAT
TGTTTCTGTTCATACCATTCATTGAATGTATATCCAGGTAATTCCAACCA
GTTTGCCAAACTAACAGTCAATTGTGAGTTAATCATATTATGCCATGAAC
CACCTGGTGGACCGAATCCAAGAACAACATGTCGGACTTCATTTTCGGGT
AAATATTTCCATTCGATAACCGATTCGNCGGTGGACCAAATCCAAGAACA
ACATGTCGGACTTCATTTTCGGGTAAATATTTCCATTCGATAACCGATTC
GGGTTTGGTCAACATATCAGCATTTGGATGGTATAAATGGTCGAAGAGAA
TTGATACAGGATTCATGGTTCGTGAATCGAACAAACCTTCGCTCAGCCAT
TGTAAATCCTGCGGAAATGAAGAGAATCAAATTCTTTATTACATAGAAAA
AGACAACTACAGATGAACATTCTTCAAGTGATATAAAAATCAAATATGAA
TTTAAAAAGTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002129-exon-sc0000018-1575043694:325658..325689 | TCONS_00002129-exon-sc0000018-1575043694:325658..325689 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1575043694:323217..323310 | TCONS_00002129-exon-sc0000018-1575043694:323217..323310 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1575043694:321428..322803 | TCONS_00002129-exon-sc0000018-1575043694:321428..322803 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1510915933:325658..325689 | TCONS_00002129-exon-sc0000018-1510915933:325658..325689 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1510915933:323217..323310 | TCONS_00002129-exon-sc0000018-1510915933:323217..323310 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1510915933:321428..322803 | TCONS_00002129-exon-sc0000018-1510915933:321428..322803 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1491911889:325658..325689 | TCONS_00002129-exon-sc0000018-1491911889:325658..325689 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1491911889:323217..323310 | TCONS_00002129-exon-sc0000018-1491911889:323217..323310 | Clytia hemisphaerica | exon |
| TCONS_00002129-exon-sc0000018-1491911889:321428..322803 | TCONS_00002129-exon-sc0000018-1491911889:321428..322803 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:321428..325689 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR023753 | FAD/NAD-binding_dom |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016491 | oxidoreductase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0016491 |
oxidoreductase activity |
Blast
BLAST of TCONS_00002129 vs. Swiss-Prot (Human)
Match: OSGI2 (Oxidative stress-induced growth inhibitor 2 OS=Homo sapiens GN=OSGIN2 PE=2 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 9.356e-68 Identity = 141/396 (35.61%), Postives = 199/396 (50.25%), Query Frame = -2
Query: 140 SVIEWKYLPENEVRHVVLGFGPPGGSWHNMINSQLTVSLANWLELPGYTFNEWYEQKQLSLGNLPKVPSVGGVHPERTNPYYIGLYYSDYVKYMGLSSFFVDNVYVKSISQ----------------------SLSN--TSQWTVEGVQYTDQQTGETYTVKADNIVMATGAFNNPRKLEIPGEDFTFVHHHFPDFD------RLQTHKCPVVVVGCGLVAADAVLYLISRQIPVIHVFRRSPKDPNLVLNQL-SSAYADY------XXXXXXXXXXXKCEFYTPLPQHRLAEILPNKEVLIEPCGKKGGASFKVHVSRVIIHVGSKPNLDFIKXXXXXXXXXXXE-FNIKTNCLDTDLLTYECRGRKSLYAMGPLVGDNFIRFVSGGALGITHGL 1213
SV+ WK + + HVVLG GPPGG+WHNM S LT+S +W+ELPG F +W K+ SL +R P I YY YVK MGL F +N Y+ S+S+ SN W + G Q + + + A+N+ +ATG ++P LEI GEDF FV H P+F +L+ PV++VG GL AADAVL + IPVIHVFRR DP+L+ QL Y +Y + +S + YT P+HR+ + + +++ G +S ++ +GS PNL F+K++ + K N ++ D TYEC +L+A+GPLVGDNF+RF+ GGALG+T L
Sbjct: 105 SVLHWKLEQHHYIPHVVLGKGPPGGAWHNMEGSMLTISFGSWMELPGLKFKDWVSSKRRSLKG------------DRVMPEEIARYYKHYVKVMGLQKNFRENTYITSVSRLYRDQDDDDIQDRDISTKHLQIEKSNFIKRNWEIRGYQRIADGSHVPFCLFAENVALATGTLDSPAHLEIEGEDFPFVFHSMPEFGAAINKGKLRGKVDPVLIVGSGLTAADAVLCAYNSNIPVIHVFRRRVTDPSLIFKQLPKKLYPEYHKVYHMMCTQSYSVDSNLLSDYTSFPEHRVLSFKSDMKCVLQSVS---GLKKIFKLSAAVVLIGSHPNLSFLKDQGCYLGHKSSQPITCKGNPVEIDTYTYECIKEANLFALGPLVGDNFVRFLKGGALGVTRCL 485
The following BLAST results are available for this feature:
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