TCONS_00002135 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00002135
Unique Name	TCONS_00002135
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1421

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000018:340115..345714-
coding sequence from alignment at sc0000018:340115..345714-

transcript sequence

>TCONS_00002135 ID=TCONS_00002135|Name=TCONS_00002135|organism=Clytia hemisphaerica|type=transcript|length=1421bp
CATTTATTGATGGATGGGATGGCGGTAGttttttaaaacaTATAGATACA
ACTTCAATAAACTAGAAAAATTCATCAATCATAAAATGACTGAAAGAACA
CCACAACATATGACAACATCTGCTGACCGATTCTGGTTGCGCATTACAAA
CACATTGCCTGCTAAAGAAATAGGATCAGAAGTCTCATTGGGCATAATGG
AAAAAGCAATGAACAGGAGAAGAGTTGGCATTAACGTAGGCCTCATTTTG
TTTTCATCCATTGCTGCTTTTGCGTATGGACGTCAATTCAGCAAAGAACG
AAAAAGTAGAGCTCAACAAATCGAAGAAGACCAATTCAAAtagattatta
ttttttttgaagtaTATGGAAATAAGTACAAGATTTTTAGCTACCAGACA
CAGATTGCTAGCAATTCAAAAGAATTTTAGCTGACTTTGAATGTTGGAAT
TTTCTTAAATCAACGAagtaaatcaataaaaatattatGTACTATGTGTA
ATTCAAGTTTTAAAcatattatttttcttgtatttttaaatctttaaatc
aAATGCAGAAAAATGATAACTGCGGTgtgagtttttttcttttttgtaaa
taCGGACTAATTATTTTTACATTCAGAAACTTAGAAAAcagaatatttca
aatataGACTCTGGGTTGTTTTTTTACAtccctttttctttcaaagatgc
tcaaaattaactaaaacttggttttcatAGAAATAAGCGTTCAATTATTA
TGAGCCTGACctatttccatttttttttttcagttgaaaaaattaaacta
aaaataataattattaaaaataataattactGAAATTACATATGTCTCTT
AGATCAAAGgttttaggTGCTTATCGTACTCTTTTACGCACAAGGCAGAT
AGTGTTTTCAGGCGATGCAGTCGCATTAACAAAAAGTAGAGAGAAAATAA
GAGACAGCTTCCTGGCTAATAAACATTTAACCGCATCAGAGGATATTTTA
CAACAGATTCAATGTGCTAATGAAACAAGTGATTTCTTGCTTCAAGGAGT
TGTTCAAGGGAAGTTGAACACACAAGATAACACATACAAAGTCAAAATTA
CTGAACATACAAAACTTCACgataatgtccctttaaaagaaCAGAACAAA
GTTGATctcaataattttgaaattccacaaaaattcCGCAAGAAGAAGAA
CTGAATATCATAAGATGAACAAagagaatttattttgaatgtgtaaataa
tattttatatgaatgaaaaaaaatcacttctaaaaacaaaaactttgttC
CCGTAGTCCTAAAATAGACTAAATTCTTGTTGATGGAAACTGTTGATATC
AACATCAGTTTAGTttcctcctgggttggttccaCCGCAGAAATTTTAGA
CTAGGCCCAGTTCTCAACCCC

Run BLAST on NCBI

protein sequence of TCONS_00002135-protein

>TCONS_00002135-protein ID=TCONS_00002135-protein|Name=TCONS_00002135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=120bp
MSLRSKVLGAYRTLLRTRQIVFSGDAVALTKSREKIRDSFLANKHLTASE
DILQQIQCANETSDFLLQGVVQGKLNTQDNTYKVKITEHTKLHDNVPLKE
QNKVDLNNFEIPQKFRKKKN

Run BLAST on NCBI

transcript from alignment at sc0000018:340115..345714-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00002135 ID=TCONS_00002135|Name=TCONS_00002135|organism=Clytia hemisphaerica|type=transcript|length=5600bp|location=Sequence derived from alignment at sc0000018:340115..345714- (Clytia hemisphaerica)
CATTTATTGATGGATGGGATGGCGGTAGGTAAGAAGATTGATTGTGTTTT
GAAAGGCTGAAGTAGTGTGAAAAGGCAGGACCCTGCCGACGCACCGGACT
GTCCGGTGTATATTAATCCGGTGTATTTTTCCGGTGTTAAGAAGTATCCT
TTCGTTACACCGGACACAATAAGTCAGGTGTTAGTCTGGTGTTGTGCATA
CAGCCGGAATTTTGGACGCCGGACATTATGAAACAAAAATTAAGAAACAC
TGGACGCACCGGAGTCATGTCCGGTGGGAAAAAAATATCCTTCTCCGACA
CCGGACATCCTGTGTAGAAATTGTCCGGTGGTAGAAAATTTCATTTTACA
CCTCAATTGAACGGAATTACGATCAAACCAAATCGAACGCAATCGACCGA
TTGAAATTTGATTGTCGAACGCAATCGAATCTCATTCGAATATTACCGCA
ATTTTCAGATTCGATTGATATTCGATTGTGTTCGATTGATGTTCGATTGC
GTTCAATTGCGTTCGATCGTCGATTCATTGACCCCCGGATTGTTCATCGC
ATAATTTCTACGGGAAATCAAAAGTAATTTCATTCGGCTTGTGATGTTTG
AGAGCTTGGATGTTGGAAAGCTGCAAGAATAAAGCCAGACATTCTCAATC
GAACGGAATCGACGATCGAACCAGTCGACCAACAATCGAACCAATCAAAT
ATTACCCAGAATTTTGACGTTCGATTGCGTTCGACAATCGAATTTCAATC
AGTCGATTGCGTTTGATTGAGATCGTCTGGTTAAGTCCGGTGTGCGCCGC
GCCGGCAGGGTCCTGTCGTTTACTAATTGATAAAATCAATTATCGATTAA
AATGGATAGCTAATTGATAATTAATCGATTGATTAAATATCAATTAAAAA
CGATAATCGATAGCTAAGCGATACTCACAATTTTTCAGCACTCAATTAAA
TTATCACCATAGATTTTAAATCGATAATACCGATTAGGGTGGGAAGGTGA
TGGCGGACAAGATTGGAGGAAATTGTGTTTTTGAAGATGTAAAAGTTGGA
TTTGAAAAATTTTGGCCGATAAGAGCAAGGGGGGGAGGGGGTCTGAAGCT
TATCGGCCCAATGCATATAAAAATTTTGAAAGTTTTTTGTCAAAGACCCC
TTACAAAGTTAATAATTGATATAATATTAAGCAGTTATTGGACAAAGTGG
AAACCAATATGTAAAAATATTGCCAATATTTTTCATATTGGATGAGACTG
CGTCCAAATAAATGGTTTATTATCTGTTCATCGCTAAAATACTTCTAGTT
TTCAAACATAATTCCAATCTATGATCTATAAAGCTCGTGAATCTGGCTTC
TTGGTAGTTTTTTATTCAAAAGTTTTATTTTTATTTTTATTTTGTGACGT
AACGTGTCAAAAAGAAGATGCTCAATTGTCATCATTGAACTCGTTGTGTG
AAGTCAATTTTTGAAATATATAGCCTCCATGGAAGCTATATATTCGAAAA
TATTGGGCAGTAAAGAAGCCAATCAAATGTCGCTATTTACCCGTGTCGGA
TAATAAATGATTAATATCGACATAATCAGATAATTGACAAATTGATACCT
TGGCCCTATCGATTTTTAATCGATATCGATTTTTAATCGATAATATCGAT
GAAACTTCTAATTGATATAATCGATATCTTATATCTGGTCGATATAATCG
ATGTACTCACAATTTTTTAGGCGATTAGCTACCGTCAACTGCTCCAACTT
GGGACGAGTGGTTGCAACATGGGACTTGTTGATATCTGGCCTGTATTTTT
ACTTACTATTAAATCTCTTTGACAACAAATTTGTTTTGATAACTCCACCA
AGTTTATCAATCATACTTCATACTTCACATAATCTGTCATAACATGTCAC
GATAACTTTCACTGATAGCGCGCCCTTTTTAACTTTTGTTTTCATTCAAA
ATGACCTGACGCCGAATGGAGAATTAGAGAATGACCGCCGCCTAACCGCC
TTACGCCTACCGCCCACCGCCCACCGCCCACCGCCCAATGGGATTAACAA
ATAGCGAGTGTGTAACTTGTCGCGCGAGAGTGACGTCAAACCCTCCATCG
TTTTGCCACTAATTTGGTCTTCTTTGTTCCAGACACTTGCGCGTGTTCCA
CTACGGATTTTTTCATATTTCAATTTAAAAGCCTACTCGGTGCGAAAGAG
AGATTGTGTATTTTTTAATACGCGATCCATTAAACTCAAATCCAATGATT
TTGGTGGAATGGCTGTCCCATGTTGCGTCAGATAGTCCCAAGTTGGAGCA
GTTGATGGTATCGATTATCGTTTTTGATCGGTATTTAATCAATCGATTAA
TTATCAATTAGCTATTGGATTTTAATCAATAATCGATTTTATCGATTAGT
AACGTCTGGTTTTGTCTTGTGTTATTTTTAGAATGAACTAGATTTCTTGA
GAATAGATTGAATTGTCCTACAGTGATAGTGATAGTATCTAGCTAGCTAG
TATCCAAGAAAACTGGTGGCAAATGCCACCCCCCCTCGAGTGGAAGTTTT
TCACAGGGGTGCCCCCCTCCGAAAAACAAAGGGTGCAAAAAGATGCCTTT
GGTTATTAATTTTGGCGCCCCTTTGCTCTTTTACAGCTTAAATGGGTGAA
TTGCAGAAAAGTCATACAATGTCCCGTCCGCAATAAAAGCACCATTTATG
CTTACAAATCAACATCTAGGAACTAGAGAACCCCCTTTTCTTTGTTGTGA
CATATTGAATGCCTTCTTCTGTTAAAGACATTTTTATTGCCTTCAAATAA
TCTATTCTGAATTTTTAAACTGGTAAAAACTAATATGGTCCAAAAATTTG
TCCTGTCCGCAAGGGCAGAAAATTCTTTTTTAATTTCTCATTTTTTGAGA
CATCTTTAATGTTCTAACTGTATCAAGCCAATAAACTATAGGGAACAGCG
ACCGTAGTACTGTGGTAGAGCATCCGGCTAAGGTTCGCAAGGTTGTGGGT
TCAACCCCCAGCCGGGTCATACCAAAGATTCCCAAAATTGATGCCTCTCT
GCTTGATGCTCAGCAACTAAGAGAAGGATCAAGGGAAAGTGGAGAAATCC
AGGGAGAAAGAGTGGCGCCCTCCCCTACCTTCAGGTAGATAGCTATCAAA
AGAGTAGCCTTCGGGTCGCCTCCGACTGCGGTCGCAGACTTACTTATAGG
GAACTACATATGCTTTTTGCAGCAGTATATATTCCTTTTCTTGACATTAC
ATGTACTGGCTATGAATTAAAAACTTTTTGTCCTATCCGCAACAAAGTGT
CTATAACACTCCAAGGAAGGCTATTTAGTGAAGTTCACAAAAATGTGCTA
CCGGATAACGGTAGCAGAAACTGAATCTTTTTAATTGAGTTTTTAATTGA
GGCTACCTTACCACCAAGAACATTATTTAATCTGTCTTATATAATGTAAA
ATTGGATTTTAAACCTTTTTTTGATGTCCTAAAAGGCATTTTGCATTTTT
AAAGTCATTACTTCAGTTCCAGCCAGTGCAGTGCTATAATACTTCATACG
CCTACTTGATTTTGAATGTCATTTTTTTTAGTTTTTTAAAACATATAGAT
ACAACTTCAATAAACTAGAAAAATTCATCAATCATAAAATGACTGGTAAG
AAAAAGATCTATTTTTTGAAATATTGTTACTTGTTGTTCATGTATAAACT
TTTCTTATTTTTTCTCAATTGAGAGCATTTCTAAAATGCTACTAAAGTAA
CTTACTGTATCATTAGTATATCTAATTTCTTATATATTTTATTTTTGAAA
TATGTTTTTTTTTCTTCAATAATTTTCTTTTTCTTATCTTATCCATTTCA
AATAGAAAGAACACCACAACATATGACAACATCTGCTGACCGATTCTGGT
TGCGCATTACAAACACATTGCCTGCTAAAGAAATAGGATCAGAAGTCTCG
TAAGGACAAACTTTTGTTTTCAAGTGTTAGTTGAACAACGAAACCATTGA
AGTTTTTTTTTTCAAGATGCTTTTTGGCATAGACTTGGACCAAGATTTTA
CAATTTAAAAGTTATTCTAAATAATGGGATCTATATTCTAATGTGCCTTC
TTTCTTAAACTAGAGACTTTTTTCATGATATCTCTCAGATCGATCAATTT
TCAATTTTTAGTGTAAGTAATCCAAAAATGCATCGCAAATTGCGAAATAC
GATACGCTAATTCGATCCCTGTTTCTAATGAAATAGCACTTAATTATCCT
GTTACGTTTTGTAATTTGTTTTATAGATTGGGCATAATGGAAAAAGCAAT
GAACAGGAGAAGAGTTGGCATTAACGTAGGCCTCATTTTGTTTTCATCCA
TTGCTGCTTTTGCGTATGGACGTCAATTCAGCAAAGAACGAAAAAGTAGA
GCTCAACAAATCGAAGAAGACCAATTCAAATAGATTATTATTTTTTTTGA
AGTATATGGAAATAAGTACAAGATTTTTAGCTACCAGACACAGATTGCTA
GCAATTCAAAAGAATTTTAGCTGACTTTGAATGTTGGAATTTTCTTAAAT
CAACGAAGTAAATCAATAAAAATATTATGTACTATGTGTAATTCAAGTTT
TAAACATATTATTTTTCTTGTATTTTTAAATCTTTAAATCAAATGCAGAA
AAATGATAACTGCGGTGTGAGTTTTTTTCTTTTTTGTAAATACGGACTAA
TTATTTTTACATTCAGAAACTTAGAAAACAGAATATTTCAAATATAGACT
CTGGGTTGTTTTTTTACATCCCTTTTTCTTTCAAAGATGCTCAAAATTAA
CTAAAACTTGGTTTTCATAGAAATAAGCGTTCAATTATTATGAGCCTGAC
CTATTTCCATTTTTTTTTTTCAGTTGAAAAAATTAAACTAAAAATAATAA
TTATTAAAAATAATAATTACTGAAATTACATATGTCTCTTAGATCAAAGG
TAAGATCATCATTCATCTATCATCTTTTAGGAAAACACTACTCCAGCAGA
TGTATAACTTCTTATGTATTTCAATGTTTTTTTTTCAGGTTTTAGGTGCT
TATCGTACTCTTTTACGCACAAGGCAGATAGTGTTTTCAGGCGATGCAGT
CGCATTAACAAAAAGTAGAGAGAAAATAAGAGACAGCTTCCTGGCTAATA
AACATTTAACCGCATCAGAGGATATTTTACAACAGATTCAATGTGCTAAT
GAAACAAGTGATTTCTTGCTTCAAGGAGTTGTTCAAGGGAAGTTGAACAC
ACAAGATAACACATACAAAGTCAAAATTACTGAACATACAAAACTTCACG
ATAATGTCCCTTTAAAAGAACAGAACAAAGTTGATCTCAATAATTTTGAA
ATTCCACAAAAATTCCGCAAGAAGAAGAACTGAATATCATAAGATGAACA
AAGAGAATTTATTTTGAATGTGTAAATAATATTTTATATGAATGAAAAAA
AATCACTTCTAAAAACAAAAACTTTGTTCCCGTAGTCCTAAAATAGACTA
AATTCTTGTTGATGGAAACTGTTGATATCAACATCAGTTTAGTTTCCTCC
TGGGTTGGTTCCACCGCAGAAATTTTAGACTAGGCCCAGTTCTCAACCCC

Coding sequence (CDS) from alignment at sc0000018:340115..345714-

>TCONS_00002135 ID=TCONS_00002135|Name=TCONS_00002135|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at sc0000018:340115..345714- (Clytia hemisphaerica)
GTTTTAGGTGCTTATCGTACTCTTTTACGCACAAGGCAGATAGTGTTTTC
AGGCGATGCAGTCGCATTAACAAAAAGTAGAGAGAAAATAAGAGACAGCT
TCCTGGCTAATAAACATTTAACCGCATCAGAGGATATTTTACAACAGATT
CAATGTGCTAATGAAACAAGTGATTTCTTGCTTCAAGGAGTTGTTCAAGG
GAAGTTGAACACACAAGATAACACATACAAAGTCAAAATTACTGAACATA
CAAAACTTCACGATAATGTCCCTTTAAAAGAACAGAACAAAGTTGATCTC
AATAATTTTGAAATTCCACAAAAATTCCGCAAGAAGAAGAACTGAATGTC
TCTTAGATCAAAGGTTTTAGGTGCTTATCGTACTCTTTTACGCACAAGGC
AGATAGTGTTTTCAGGCGATGCAGTCGCATTAACAAAAAGTAGAGAGAAA
ATAAGAGACAGCTTCCTGGCTAATAAACATTTAACCGCATCAGAGGATAT
TTTACAACAGATTCAATGTGCTAATGAAACAAGTGATTTCTTGCTTCAAG
GAGTTGTTCAAGGGAAGTTGAACACACAAGATAACACATACAAAGTCAAA
ATTACTGAACATACAAAACTTCACGATAATGTCCCTTTAAAAGAACAGAA
CAAAGTTGATCTCAATAATTTTGAAATTCCACAAAAATTCCGCAAGAAGA
AGAACTGAATGTCTCTTAGATCAAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_001113	XLOC_001113	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00002135-protein	TCONS_00002135-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000018	supercontig	sc0000018:340115..345714 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
56.3681	53.253	62.6264	62.1843	55.1265	41.1366	57.7664	59.6906	61.3467	49.6133	47.7819	37.9044	19.342	15.2877	23.8425	22.9155	40.3789	37.9883	15.0294	17.0627	23.1082	22.0733	48.7238	45.293	25.3078	33.3614	32.7735	27.6315	34.648	28.8266

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR008011	Complex1_LYR

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00002135 vs. Swiss-Prot (Human)

BLAST of TCONS_00002135 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00002135 (transcript) - C. hemisphaerica