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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002042 ID=TCONS_00002042|Name=TCONS_00002042|organism=Clytia hemisphaerica|type=transcript|length=2817bp
ACCGTGTGGCCAACGACAATGACCATGTAGCCAACGACAGTGACCGTGTA
GCCAACGACAATGACCGTGTGGCCGACGACAGTGACCGTGTGGCCAACGA
CAGTGACCGTGTGGCTAACGACAGTGACCGTGTAGCCAACGACAGTGACC
GTGTGGCCAACGACAGTGACCGTGTGGCCGACGACAGTGTCCGTGTGGCC
AACGACAGTGACCGTGTGGCCAACGACAGTGTCCGTGTGACCAACGACAG
TGACCGTGTGGCCAACGACAGTGACCGGGTGGCCAACGACAGTGACCGTG
TAGCCAACGACAGTGACCGTGTGGCCAACGACAGTGACCGTGTAGCCAAC
GACAGTGTCCGTGTGGCCAACGACAGTGACCGTGTGGCCAACGACAGTGA
TCGTGTAGCCAACGACAATGACCGTGTGGCCAACGACAGTGACCGTGTAG
CCAACGACAGTGACCGTGTAGCCAACGACAGTGTCCGTGTGGCCAACGAC
AGTGACCGTGTGGCCAACGACAATGACCATGTGGCCAACGATAGTGACCG
TGTAGCCAACGACAGTGATCGTGTAGCCAACGACAATGACCGTGTGGCCA
ACGACAGTGACCGTGTAGCCAACGACAGTGACCGTGTGGCCAACGACAGT
GACCGTAACACGACGTGACACGAACGTGACTAAAATGACCAAATCAATAC
ACAATTATTTACTCATATCGATTAAAGattttttcaaatgtcATGTTACA
CCGATTGATATTATCAATACAAGTTTATTGTTCGAACGAGGATACAGGTT
GTCAATGGGTCGGTGAAGTCAACCAATTGGAGGAGCATTTACTGTCATGC
GCAAAGGGTACAGGTTACCATCCCAACAGAAGAGCATTAACATTCGGTAA
AAAACAGCACGGTTTTAACAACTCGGCATCAAGCAGTTCcaataaccatc
attctttcaaccaatcacaacacgacaattttcaaaacaatgtGATGCTC
AACATGCTGGATAGTTTAACATCACTTCGTTCGAAAATGGATTTCATCGA
AAACAACATTACACCTAACCATACGTCATCTCCTGAAAGGCACGCCACGA
GTGCTTGCCATTCGCGCACACCAAGCTCTGGCACCGGTGGGAATACTCCT
AAAGTCCAGCGTAAAAGATCACGACGCAGTCAAAGCGAGGAAACAACTGC
TCTAACTAAATTCAAAAACCTCATTCATTTCGAAAATCAAACCTACctga
aaatcggattttttgtCGCCTTAATATCGATATACCTGATGACGGCAAAG
TTGTTTTACACCATGGAAAATACTCCATCTTACGACTCTACAGCATGTGG
AAACCGCTTCGATCGTCTTTTGTCACAGGACATTCAAAAGAGCACTGAAA
CATTTGAGGCCGGTTTTCATCGTCTAAGTGAATTTCATGAATACAACATA
AGGATCCATCTACATGAGCTTCAATCGCAAGAAAAGGAAGCGGCCGAAAT
GATCCCATCTTTTTATCGCGAGATGAACCGAACCATTGTAGAGATGGATC
GACGTTTTCATTGGCTGATTGAACAATCACGTGatgaaatcaaaagaaac
attacgtcatttgaTGACCGATCACTGAGGGAATTCTCAATCGATAGCGT
GGTGGTTTTAGTTGGTATGGTCAATGATATTACCAATAATGTTTGGAGGC
GAGTGACCGAAGAAATGAGTTTCAGCGAATATCGAATGTTGAACCGAGCA
GGAGCTCTGGTTGATTTTGTacgacaaaaatattttgaaattttggagaa
AGCCAAGTTCAATTTAAGCCAAACAAAAGGGCGGTCAGCTTTAAAAGATC
TAAGTCTGGAGTACGAAGGATTTGTATCAAATGTAACGCAACGCCTAACT
AGCCTGCATGAAGATCAAGTGGAATCAATGGTCAGGCTAGATATATCAAC
CGTTCGTAAATTTTACGAGGATTATTTACGAGCGTATTACACGAATCAGT
CGCAACTGGTAACGCACGAAAATCGTTTGCAGTTCTTGGTAGATTCGGTG
CAGAACAAGAATCTAATGAACGGTCGTTTTATTTGGCAATTAAATGCTAC
GCGAATCTTGGAAACAAGACGCAGCAAAGATGTACAAAGTTCAATTGAGT
TTCGATCTGGGTCTATGGGCAAAGCGCGTTTGTATTTGTACCGCGATCGA
GTTCGTAAAGGGTTTTGGAAGATGTCCTTTGTCCAAGTGGACTTAAATCC
AGTTAAGATTTGGCTATCTGTATTAAGTCAAGTTAAGCCGGAGCTGTTAT
TGATTCACGAGAATATCGTTGGTTCTGTTACAATTCCGGTCACCAAGGCT
GAGagatcgaaagtgaaagtggtcAAACATTTCTCACTACCAATGAATAC
TACCAAGCTGATTGAGAAAGGTTATATTAAGAATGGTAGAATCTACATTC
GATGTCTTACTACTGACTAAATACATTACTGATGTGATGTATTTATTATA
GAGATGTTATAATAAGAGACTTGGGCGGGAAAAATGTTTATTCTAGGAGC
TAAGTGATATGCCTGACCTTGGTATTATAGATTTTNGGACTTGAGCGGGG
AAAATGTTTATTTTAGGAGCTAAGTGATATGCCTAACCTTGGTATTATAG
ATTTTGTTGTTGTATCAGTTAATTAAAATGTCGGTTATTGTATTctaaaa
aaatcgaacaaatgtttttaaagctaaaaataatattattcattctttga
aaattcttaatattttttagatttaaaccGTGTGactcttataaaaagaa
ttcttatacaaaaaaat Run BLAST on NCBI transcript from alignment at sc0000018:443603..449276+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002042 ID=TCONS_00002042|Name=TCONS_00002042|organism=Clytia hemisphaerica|type=transcript|length=5674bp|location=Sequence derived from alignment at sc0000018:443603..449276+ (Clytia hemisphaerica)
ACCGTGTGGCCAACGACAATGACCATGTAGCCAACGACAGTGACCGTGTA
GCCAACGACAATGACCGTGTGGCCGACGACAGTGACCGTGTGGCCAACGA
CAGTGACCGTGTGGCTAACGACAGTGACCGTGTAGCCAACGACAGTGACC
GTGTGGCCAACGACAGTGACCGTGTGGCCGACGACAGTGTCCGTGTGGCC
AACGACAGTGACCGTGTGGCCAACGACAGTGTCCGTGTGACCAACGACAG
TGACCGTGTGGCCAACGACAGTGACCGGGTGGCCAACGACAGTGACCGTG
TAGCCAACGACAGTGACCGTGTGGCCAACGACAGTGACCGTGTAGCCAAC
GACAGTGTCCGTGTGGCCAACGACAGTGACCGTGTGGCCAACGACAGTGA
TCGTGTAGCCAACGACAATGACCGTGTGGCCAACGACAGTGACCGTGTAG
CCAACGACAGTGACCGTGTAGCCAACGACAGTGTCCGTGTGGCCAACGAC
AGTGACCGTGTGGCCAACGACAATGACCATGTGGCCAACGATAGTGACCG
TGTAGCCAACGACAGTGATCGTGTAGCCAACGACAATGACCGTGTGGCCA
ACGACAGTGACCGTGTAGCCAACGACAGTGACCGTGTGGCCAACGACAGT
GACCGTAACACGACGTGACACGAACGTGACTAAAATGACCAAATCAATAC
ACAATTATTTACTCATATCGATTAAAGGTATAATCAACTTTTCTTACAAT
ACACAGATACAGTTACCTCCCTCTAATccgaacctctataattcgaattt
tccATCATTCGAAACTAAAACCTTTGTTTCATCAGCTGGAAATGTCATAT
GTAATTCAAATCTTCCTCGGATTCATACGTCTCTGAGACAGCTCTTGTTG
TTAATTCATTGCACGACTTGTAAACCTCGTAAATTTTGCTTAATGATATC
GTCGcggttttaatgtttttttttaaataataaaaccGCCCATTTTTTCG
ATGAGAGATATGAATGTAtcttttgctttgttttttttctctgtaTGCGA
TCTTTTGTTTGCGATAGACCGTCTTcagattttatcaattttacttATAT
GACTGATACACAAACTGAAGTATGACAGAAAATATATGGCCGACATAATG
AGTCATTTGTACGCTATAAATCATCCCTCTTCCCTCTTTTGCTCTTTGTT
TCGATTTATTCCAATGGGTtcttccagaaaatatttgtaCATAAGTGGTG
GAGGatatatattggatattttgtccgggggtattggaaaatctgcaaaa
tttacctttttttagGGGCTTACTTGCTCTGATTcggggtgattttgaat
gtccgggggggggTCAACTGACTGACTCTCAACTGGGTTGAGATCGGTTG
TCCGGGgagtaaatttccaaaatatgTTTCAGCcagcatattcaattttt
ttctggaagagcccaatctcCCGAACCTTATCAGGAccactttgaaaata
ttttcaaatattgtcAAATGAAAAGTGTCTTACTTGCTCaatttccattt
tattttggaGGTATCCAGAAGCATAATTCGTGGTATtcattcatgacgta
atgttttatacggaagcacaaAAAAAAGACCGGGTATTTGTCActaattt
tgaatccaaaattGGTGGCAAAAGTCCGAGCTATTTTAAATGCTTCCGTT
TAGAACATATCATCGTGAATATCATGACTTCCATCCCAGCAGGGGCCCCT
CTGAAAACCATAACTTTattaattgtttcgtttttttaaagattttttca
aatgtcATGTTACACCGATTGATATTATCAATACAAGTTTATTGTTCGAA
CGAGGATACAGGTTGTCAATGGGTCGGTGAAGTCAACCAATTGGAGGTGA
GGCAGAATTAATATTTCATAATTGCACGATAGGttgttattttttctcaa
agagagcaattaatcgtttaattgcatcctgtaataccgtggtataatag
ccatggtatatcatggtaattattcaatggctgtttttgcctacaggtat
ataataatagaaaaaaatcttcgaacattatcattattttttcttagctc
tagtttagacggccgactttctgccctgcctattctaattgttagagtag
gcagaatGTGGGCACAAAGTTGGCTGTTAAAATGAAGTGCGTATCCTCac
taaatataataaaatttatATCTGATTAACGTCACACTTCTATCGttcga
ttatttttgaaaattcgatTAAAATCAAACTATTTTCAGGGCAAGTTTCC
TCGTATACTGTGTCGATAAAACCTTCTGGTGTGTAAGATTCAGAAAACAT
CTCCCGTAGGTAATTCTGTAGCACCAGTAGTACAGATAAGGTGATTTTTC
CCACTTTGTCAAGATTCTTGTAGAGGAAAATTCTAAATCTTCTTAAGACA
TAGGACCAAATGCATTTTCAGAGATTCTACGGAAACGTGATAAGTGATAA
TCATAGTGTCCAGCCCCCCCCCTCTTTTACTGGGGGGCTAgagattttta
aaatgttccaaaaatggGGCAACAAACCTTAGTTTAAGACTTTTTCCCTT
TCAATGTGTCAGATGGTCCAGAGTACCGGTTCCCACAAATCTCCAAAAAT
GGGGGGGGGAAGGGGGTctgggaaattttgaattttctggaGGGATGAGG
TAGAAGGGGTCACCTGCTTTTTTCCCTGAGGGCTGAGACCCTAAGGACAC
TATGATAATTAAATACACGACTTCTGAGGGAAAGGTCCTGTTGAATGGAG
GGTTTAAGGCAGTCTATCCCCAAAGGAAAAGCACTGTCTCCGACAAATAC
ACATTAAGGTACAGGATAGTGTCATGGTTGATGTAATTGGGGTCATCAAG
ATGGTAATAAGCTAGGTCCTTGAAGGCCGAATGTGTCGTATTCAAATGCT
TTGTATTAGAAGTAaaattctatttcaatgatcttaagttatcaaaaata
gcaaaagaaatattttttccggcCTGctgcatgagagcttttttccttca
cccgcattctggaaacactacatttttttattgtcCAATTTCTTGATTTT
AATCGCCATGTTTCCTTACCTCTATTTTTAGGAGCATTTACTGTCATGCG
CAAAGGGTACAGGTTACCATCCCAACAGAAGAGCATTAACATTCGTAAGA
AGTATTCTTTTGGCCTTCACAAAATTATTCTGACCATTTATGTTAAATGA
TAGCTAGAAAAGCAAATCACACTTTACATCTTTATGAATATATTAATAAT
TCTTGATCTTGATCTGTTTTTAAAGAACGTTGATGTTTAAGAACTATCCG
CGGGGGCACAATCGTACGTGCGTGCGGCCCTTAATGGTCCTTTTTCTTCC
CAAAGTACACTGTAAATGTCCAAATAAGCAAAGGATGAGACAAAACTTTT
AAGAAAACTTACCGTAAGGGTAGATTTTTCgacaaatttgctcaaatttg
gctaaatgtCTTCTGCACTGTAAGGCCTTTATTTTGGGCCccacgtacgg
tcgtttttgaatcgagtgccctcCCCCTCCGGGAGAATCATGCACTCCCT
AAATCACAAGAAAgtattttaaacctaaaaaatttcaactctatttttgt
tttagtttgGGAAAGTATCTTTGTtgacaagattttttgaagaatagaTA
TATTAGAGGAATACGGAAATTAATGACTCTTTCATCTCATTTATAACTCT
AGGGTAAAAAACAGCACGGTTTTAACAACTCGGCATCAAGCAGTTCcaat
aaccatcattctttcaaccaatcacaacacgacaattttcaaaacaatgt
GATGCTCAACATGCTGGATAGTTTAACATCACTTCGTTCGAAAATGGATT
TCATCGAAAACAACATTACACCTAACCATACGTCATCTCCTGAAAGGCAC
GCCACGAGTGCTTGCCATTCGCGCACACCAAGCTCTGGCACCGGTGGGAA
TACTCCTAAAGTCCAGCGTAAAAGATCACGACGCAGTCAAAGCGAGGAAA
CAACTGCTCTAACTAAATTCAAAAACCTCATTCATTTCGAAAATCAAACC
TACctgaaaatcggattttttgtCGCCTTAATATCGATATACCTGATGAC
GGCAAAGTTGTTTTACACCATGGAAAATACTCCATCTTACGACTCTACAG
CATGTGGAAACCGCTTCGATCGTCTTTTGTCACAGGACATTCAAAAGAGC
ACTGAAACATTTGAGGCCGGTTTTCATCGTCTAAGTGAATTTCATGAATA
CAACATAAGGATCCATCTACATGAGCTTCAATCGCAAGAAAAGGAAGCGG
CCGAAATGATCCCATCTTTTTATCGCGAGATGAACCGAACCATTGTAGAG
ATGGATCGACGTTTTCATTGGCTGATTGAACAATCACGTGatgaaatcaa
aagaaacattacgtcatttgaTGACCGATCACTGAGGGAATTCTCAATCG
ATAGCGTGGTGGTTTTAGTTGGTATGGTCAATGATATTACCAATAATGTT
TGGAGGCGAGTGACCGAAGAAATGAGTTTCAGCGAATATCGAATGTTGAA
CCGAGCAGGAGCTCTGGTTGATTTTGTacgacaaaaatattttgaaattt
tggagaaAGCCAAGTTCAATTTAAGCCAAACAAAAGGGCGGTCAGCTTTA
AAAGATCTAAGTCTGGAGTACGAAGGATTTGTATCAAATGTAACGCAACG
CCTAACTAGCCTGCATGAAGATCAAGTGGAATCAATGGTCAGGCTAGATA
TATCAACCGTTCGTAAATTTTACGAGGATTATTTACGAGCGTATTACACG
AATCAGTCGCAACTGGTAACGCACGAAAATCGTTTGCAGTTCTTGGTAGA
TTCGGTGCAGAACAAGAATCTAATGAACGGTCGTTTTATTTGGCAATTAA
ATGCTACGCGAATCTTGGAAACAAGACGCAGCAAAGATGTACAAAGTTCA
ATTGAGTTTCGATCTGGGTCTATGGGCAAAGCGCGTTTGTATTTGTACCG
CGATCGAGTTCGTAAAGGGTTTTGGAAGATGTCCTTTGTCCAAGTGGACT
TAAATCCAGTTAAGATTTGGCTATCTGTATTAAGTCAAGTTAAGCCGGAG
CTGTTATTGATTCACGAGAATATCGTTGGTTCTGTTACAATTCCGGTCAC
CAAGGCTGAGagatcgaaagtgaaagtggtcAAACATTTCTCACTACCAA
TGAATACTACCAAGCTGATTGAGAAAGGTTATATTAAGAATGGTAGAATC
TACATTCGATGTCTTACTACTGACTAAATACATTACTGATGTGATGTATT
TATTATAGAGATGTTATAATAAGAGACTTGGGCGGGAAAAATGTTTATTC
TAGGAGCTAAGTGATATGCCTGACCTTGGTATTATAGATTTTNGGACTTG
AGCGGGGAAAATGTTTATTTTAGGAGCTAAGTGATATGCCTAACCTTGGT
ATTATAGATTTTGTTGTTGTATCAGTTAATTAAAATGTCGGTTATTGTAT
Tctaaaaaaatcgaacaaatgtttttaaagctaaaaataatattattcat
tctttgaaaattcttaatattttttagatttaaaccGTGTGactcttata
aaaagaattcttatacaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002042-exon-sc0000018-1491911889:443603..444329 | TCONS_00002042-exon-sc0000018-1491911889:443603..444329 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1510915933:443603..444329 | TCONS_00002042-exon-sc0000018-1510915933:443603..444329 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1575043694:443603..444329 | TCONS_00002042-exon-sc0000018-1575043694:443603..444329 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1491911889:445394..445498 | TCONS_00002042-exon-sc0000018-1491911889:445394..445498 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1510915933:445394..445498 | TCONS_00002042-exon-sc0000018-1510915933:445394..445498 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1575043694:445394..445498 | TCONS_00002042-exon-sc0000018-1575043694:445394..445498 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1491911889:446734..446796 | TCONS_00002042-exon-sc0000018-1491911889:446734..446796 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1510915933:446734..446796 | TCONS_00002042-exon-sc0000018-1510915933:446734..446796 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1575043694:446734..446796 | TCONS_00002042-exon-sc0000018-1575043694:446734..446796 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1491911889:447355..449276 | TCONS_00002042-exon-sc0000018-1491911889:447355..449276 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1510915933:447355..449276 | TCONS_00002042-exon-sc0000018-1510915933:447355..449276 | Clytia hemisphaerica | exon |
| TCONS_00002042-exon-sc0000018-1575043694:447355..449276 | TCONS_00002042-exon-sc0000018-1575043694:447355..449276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000018 | supercontig | sc0000018:443603..449276 + |
Blast
The following BLAST results are available for this feature:
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