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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002083 ID=TCONS_00002083|Name=TCONS_00002083|organism=Clytia hemisphaerica|type=transcript|length=1928bpRun BLAST on NCBI transcript from alignment at sc0000018:876030..899125+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002083 ID=TCONS_00002083|Name=TCONS_00002083|organism=Clytia hemisphaerica|type=transcript|length=23096bp|location=Sequence derived from alignment at sc0000018:876030..899125+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00002083 vs. Swiss-Prot (Human)
Match: TTC5 (Tetratricopeptide repeat protein 5 OS=Homo sapiens GN=TTC5 PE=1 SV=2) HSP 1 Score: 284.263 bits (726), Expect = 7.752e-88 Identity = 143/335 (42.69%), Postives = 207/335 (61.79%), Query Frame = 3
Query: 339 ECLSKALKLNPNLIDAWNELGESYWKNKDIDAAYNCFTQANSKEKNKVSLRNLSMVQRQIGKDFESKI-KNIKESVTTAKQAVSLDVTDGKSWFILGNAYLSCFFSTGQNPSDIKQAMVAYSRAEK-DKCSQVNPDLHYNKAVAFKYEEDFPNAMKGYEMARKLDPEWDQPKEELADLKKRLKASVELTRNKAGLKPKRVQTLLNAFKDTDYGPYQTGVYTSPLNNKIELTRTKFEELNAGRNPNKVACGKVVAMVPVTDSFPFPCILMDASSDCIVVSVFNLANGKGLLLGDTVAIPEPFVQNNAFSIENEELSFKSIRVDNPIVLVVNRRKVG 1337
E LSKA+KL P L++AWN+LGE YWK D+ AA+ CF+ A + +NKVSL+NLSMV RQ+ D E + ++ +SV AK AV +DV DG+SW+ILGN+YLS +FSTGQNP +QA+ AY++AEK D+ + NPDLH N+A KYEE + A++G+ A LDP W +P++ L + L L +K +K K++Q++L + + GP G Y S K+ L L G N V GKVV + + PF L+D+ C V V+N+ G+L+GD+VAIPEP ++ + + ++ SF S+RV+ P++LVVN + G
Sbjct: 90 ELLSKAVKLEPELVEAWNQLGEVYWKKGDVAAAHTCFSGALTHCRNKVSLQNLSMVLRQLRTDTEDEHSHHVMDSVRQAKLAVQMDVHDGRSWYILGNSYLSLYFSTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSRAAALDPAWPEPRQREQQLLEFLDRLTSLLESKGKVKTKKLQSMLGSLRPAHLGPCSDGHYQSASGQKVTLELKPLSTLQPGVNSGAVILGKVVFSLTTEEKVPFTFGLVDSDGPCYAVMVYNIVQSWGVLIGDSVAIPEPNLRLHRIQHKGKDYSFSSVRVETPLLLVVNGKPQG 424 HSP 2 Score: 80.8777 bits (198), Expect = 5.162e-16 Identity = 41/98 (41.84%), Postives = 63/98 (64.29%), Query Frame = 2
Query: 35 QPL*DLVVKLYEYRDEYLLNNDIEKAIDKPNDVKEKAKEALCELDSLQLSISEKAIFFGLRGKILNISQDYDSRAAECLSKALKLNPNLIDAWNELGE 328
Q L +LV +LY +RD Y + +E A K DV+++ ++ L +++ + S+ KA L GK LN++ DY +A E LSKA+KL P L++AWN+LGE
Sbjct: 14 QKLQELVDQLYSFRDCYFETHSVEDAGRKQQDVQKEMEKTLQQMEEVVGSVQGKAQVLMLTGKALNVTPDYSPKAEELLSKAVKLEPELVEAWNQLGE 111 The following BLAST results are available for this feature:
BLAST of TCONS_00002083 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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