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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002251 ID=TCONS_00002251|Name=TCONS_00002251|organism=Clytia hemisphaerica|type=transcript|length=409bp
AATAACACATCTTATGTAGAAAATGAAGCAAGGAGCTGTTTTAGTCATTC
TTCTCTTTTCAGTATGCCAAATTTCGGCTACCTGGCAACAAGGCTTGACA
ACGGACAAAATCGATGATTATTTTGTAGACAGGTGTGTAAAATTCGGAAC
TCTACCGCGtacaaaagagatttttgatgTCAAGAAATTTACCAAAAGTC
AATGCCAAACGTTGTGGAATCAATTTGCGGAGAATATTAAAGGTCGTGAT
CCTTGTCAAGTAACAAAGGCAGATTACAGTAGCTGGCTTAACAAAGTCGA
CGAGTTGTATTTGGACCAAAAATGGGGATATTTCAAGGATAAGGCAACCT
TCTGGTCACAAACAAAAGATTTAGCAGATGGAATGAGTGCAATTCCTGGT
TCCAATTAC Run BLAST on NCBI transcript from alignment at sc0000019:397920..401182+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002251 ID=TCONS_00002251|Name=TCONS_00002251|organism=Clytia hemisphaerica|type=transcript|length=3263bp|location=Sequence derived from alignment at sc0000019:397920..401182+ (Clytia hemisphaerica)
AATAACACATCTTATGTAGAAAATGAAGCAAGGAGCTGTTTTAGTCATTC
TTCTCTTTTCAGTATGCCAAATTTCGGCTACCTGGCAACAAGGCTTGACA
ACGGACAAAATCGATGATTATTTTGTAGACAGGTGTGTAAAATTCGGAAC
TCTACCGCGtacaaaagagatttttgatgTCAAGAAATTTACCAAAAGTC
AATGCCAAACGTTGTGGAATCAATTTGCGGAGAATATTAAAGGTCGTGAT
CCTTGTCAAGTAACAAAGGCAGATTACAGTAGCTGGCTTAACAAAGTCGA
CGAGTTGTATTTGGACCAAAAATGGGGATATTTCAAGGATAAGGTATGAA
ATAATGACTTTCAAAGCTAATTTTTACTTATGGAAAACTAGTTTGACCCT
TTCTGATTGCATTTAAGTCATTTTTATATCATCAAAGATAATTTCGGCTT
ACTGTTTGCTCCTTGACGTTGGACCAGCGAAATTTTGTTCTCTCTGGGAC
AATATTTTCGGCTGCTGATAACTTTGATTGAGGACCTAAATCTGGCTGAA
AGATAGAGCTTTGAGAGAGCATTACAACGGTATTAAATATTACGGGTTTA
GCTATCACCACAGCCGATCGAGATTCGATTCAAAGTTTAAGTATTGAAAA
CTcttaaaaatgcgatttttttagctttttgagaACGTCTATTATTAAAA
TGAATATTACAGGTTGTAAGCACTCAgtgggcctctaaaccgatctcaat
ttacaaatttcgtGTATCGAATTTCTTTGGATGGCTTTTCCAtgcttctt
tcaactttttttgaagcctttctcTAAATTATCTTTCCGACGGTATATAA
TTATGCCGAAGCAGTTAACAGTTAGAGCGAATGGTCCACCTTTAATTCCT
TGACGTCTTCAAAAagcatttttaagatttttcgattttccaatttttac
ctaaaagcggcgttaattttttctcgatttatattaacagattttaagca
tgattaaaggatgaaaactatccatttttttactctatatccaaaacttc
attgattttcaatggaattttcatcAGTTTCAAGAAAGATGACATCTTTT
TTAACgtaaattttagttaatacttactgttttgaagcctgaatagcgat
ttttacaagttctgccctaattggcgtaagccaaaaattaggctgtggcg
gaataagggccggcgtaaaaggggccaacgttaaattagggccggcgtaa
aaagagccGATAAGGTAGCTAAACCCTTAATGTTTGGTACCGCTCtttca
aaagctctattttttcAGCGTACCAAATTTTTGAATTAGGTCCTCAATCA
AAACTACCGAATGAAAAGGACTTTTTTCTGGAATAAATGGTGTGTAGATT
TTTTCGTgttattaaccctttaagtgccacggtcatttttttctattttt
taaaaagaaaatctctagttcaaacttttaaaggcttatatctcgaGATC
AAGAAGGAGTTAGAAGTTTgttcatagctcgttggatagcttagagtctc
ctctttgtTGCGCGGAactgcctgaatgatagaaagatgcgaattaattt
gaagttttacttaCCActagtaaaacttcaaattaattcgctggaggaca
gaaaacagcgccaaatttggaggttcttggatccctcgttgaccaaaaat
ggttaaaaaacggtcaaaatcttaaaaagtggatttttgtcaaatttttg
cattttttgactttttggcttaaaatcttgctaaaaaaactaacttttga
ttttttttgcttgaccatgaagtgAAGctcaatccaattcctacgagtta
gaccaaaaatgaggATTTCTAACTCAAAATGGGCATTACAAGAGGGCTTC
ACCTTCCTACATTgtccatgtctgatatatacgacattggcacttaaagg
gtaaACAAGGTGAGTCTTTTTCAGTCTTTTTGAGtgattttaggccaaaa
aatgaatattaaaaaaaacaagtaatactttaatggacctacctatttat
aaaacgaataattagaatttgatggaagtaatgtataattttaaatttcg
atttatatatctattggaacggagaaagcaattaagaaacgcaccgatgt
ttaacggtgaaagaaaaataatatcgacactttaatcaatcattcagaga
aaattaaaactgaagtaaaccgttttacgccggttttcgcctgttccgac
gatttttaaggagttccggattcaaaggatgatttttttggaaatcaaac
aatgctaagttttgggcatcatcataaagaacatttttctgtaaagaaaN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNttgaaaaaatgtgacggaaatgtgaaaaaaacgacgatttccggc
acatttccggttctacagaccggaaaaaaatttttttcgacaaacggttt
tcgacatcttttcggcagtactaatgtgcatctatgtgcaaaaaatcgca
aaaaactaatgagaaaatctcgagaaaatctgtcgagtataagttgaaaa
aatgaaggaaaaccgttttacgccggttttcggctgttccggcgattttt
aaggagttccggattcaatagatcaaatctcaaaaaaccgcttttttcgg
gacatttccggttctaccggccggaaatttttttttcttcaaaaatcggg
ctccgtcaccttcgagggtttatagtaatgcacctttgtgcaaaaaatca
gaaaaattgaatgagccaatctcgagaaaagttggtaataaCGTactaac
gaactaactaacgaacacgggttaatttataggacactaccttaaggtag
gtccaaaaataataattttggcattttttaaaaaaaattcttaactcAAT
TTATTGAGGAAATACTTTTACACAAAAATTGGCTCCAAGGAGAAGTGAGT
TTTCAGACCAAAGTCGAGGAATTTCGACCAAATAAGATTCTCCAAATTCT
TAAATTCGTATAAGCGAGGGTCAACTGTACATATATTACAAATTTAGGCA
ACCTTCTGGTCACAAACAAAAGATTTAGCAGATGGAATGAGTGCAATTCC
TGGTTCCAATTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002251-exon-sc0000019-1491911889:397920..398262 | TCONS_00002251-exon-sc0000019-1491911889:397920..398262 | Clytia hemisphaerica | exon |
| TCONS_00002251-exon-sc0000019-1510915933:397920..398262 | TCONS_00002251-exon-sc0000019-1510915933:397920..398262 | Clytia hemisphaerica | exon |
| TCONS_00002251-exon-sc0000019-1575043694:397920..398262 | TCONS_00002251-exon-sc0000019-1575043694:397920..398262 | Clytia hemisphaerica | exon |
| TCONS_00002251-exon-sc0000019-1491911889:401117..401182 | TCONS_00002251-exon-sc0000019-1491911889:401117..401182 | Clytia hemisphaerica | exon |
| TCONS_00002251-exon-sc0000019-1510915933:401117..401182 | TCONS_00002251-exon-sc0000019-1510915933:401117..401182 | Clytia hemisphaerica | exon |
| TCONS_00002251-exon-sc0000019-1575043694:401117..401182 | TCONS_00002251-exon-sc0000019-1575043694:401117..401182 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:397920..401182 + |
Blast
The following BLAST results are available for this feature:
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