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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002252 ID=TCONS_00002252|Name=TCONS_00002252|organism=Clytia hemisphaerica|type=transcript|length=2993bpRun BLAST on NCBI protein sequence of TCONS_00002252-protein >TCONS_00002252-protein ID=TCONS_00002252-protein|Name=TCONS_00002252-protein|organism=Clytia hemisphaerica|type=polypeptide|length=874bp MVFKILFICIQFGFLSAQLDIVTDETPLEDRGACISNPCLHNGMCTVTSNRun BLAST on NCBI transcript from alignment at sc0000019:441901..485607+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002252 ID=TCONS_00002252|Name=TCONS_00002252|organism=Clytia hemisphaerica|type=transcript|length=43707bp|location=Sequence derived from alignment at sc0000019:441901..485607+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000019:441901..485607+ >TCONS_00002252 ID=TCONS_00002252|Name=TCONS_00002252|organism=Clytia hemisphaerica|type=CDS|length=28875bp|location=Sequence derived from alignment at sc0000019:441901..485607+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002252 vs. Swiss-Prot (Human)
Match: DNER (Delta and Notch-like epidermal growth factor-related receptor OS=Homo sapiens GN=DNER PE=1 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 4.355e-73 Identity = 190/617 (30.79%), Postives = 277/617 (44.89%), Query Frame = 3
Query: 249 TPLEDRGACISNPCLHNGMCT------------VTSNGFICTCVNSYIGVNCERRADDCPRDLSMKCVHGVCKLDMNGNPK---CICKEGFEGPICSLQVDNCASNPCLNSGTCIDKVGGYECKCKSNTRGSHCQIKDDEISKCLNSCGDHYYGGKCWH--NGEQKISVGWGLGEPICNTLQTCFNATKGQFDDHEYIPAQLKPIQMQDTDDLVFITDRDASLYDHHFIPHILPMEASSRDAFEKCNTTNALPLTKNISISKLNVNDKLLHPGIQYFIANMN-HLYRCDFGLRLNVTVKDKACTDPKDLTPNQFCNGHGKCYTDFTQKLYSCLCCEGYAGKYCQHEDPCVAKPCSNNGQCKLIDIGSGMLNHECECQPGYHGKQCEKKINHCQSYPCQNDGACYPELGDFRCQCKEGFSGKQCEINNDECASSPCKNGGKCQDGLNNFKCVCEPGFKGTLCEINIDDCEMQPCINSTCLDLVNNYTCACSPGQSGRNCEHVLDECSTYPCKNGK-CVNEEGGPTCSCGIGYTGQLCELKLDLCRHSQYCITKHAISCVDRGDNVTCTCADGWAGSNCGVNIDECEGNKCVNGGQCVDEVSGYVCKCKNGFTGLYCEV 2042
PL G C + PC + G+CT G+ CTC G NC+ AD C S C HG C + + CIC EG+EGP C + P L + + + + + T+ + + + L + W G++ + + W E I + C NA+ +L ++ + D ASL IL + ++ F++C+ + +T + L + +++L G +FI +N + + LRL + VK C + + C+G GKC T ++ +SC C E Y G +C+ D C KPC NN C + N C C PGY G+ C+ KI++C PC+N C L F CQC EG+ G CE D CASSPC+N G C +F C C PGF G C ID C + PC + TC + +Y C C PG G CE +EC + PC N C + G C C Y G CEL D C + C+ + +C G N TC CA G+ G C ++I+EC+ N C +GG C+D+ +GY C C +G+ G CE+
Sbjct: 40 APLSAPGPCAAQPCRNGGVCTSRPEPDPQHPAPAGEPGYSCTCPAGISGANCQLVADPC---ASNPCHHGNCSSSSSSSSDGYLCICNEGYEGPNCEQAL------PSLPATGWTESMAPRQLQPVPATQEPDKILPRSQATVTLPT----------WQPKTGQKVVEMKWDQVEVIPDI--ACGNASSNSSAG-----GRLVSFEVPQNTSVKIRQDATASL--------ILLWKVTAT-GFQQCSLIDGRSVTPLQASGGLVLLEEMLALGNNHFIGFVNDSVTKSIVALRLTLVVKVSTCVPGESHANDLECSGKGKCTTKPSEATFSCTCEEQYVGTFCEEYDACQRKPCQNNASCIDANEKQDGSNFTCVCLPGYTGELCQSKIDYCILDPCRNGATCISSLSGFTCQCPEGYFGSACEEKVDPCASSPCQNNGTCYVDGVHFTCNCSPGFTGPTCAQLIDFCALSPCAHGTCRSVGTSYKCLCDPGYHGLYCEEEYNECLSAPCLNAATCRDLVNGYECVCLAEYKGTHCELYKDPCANVS-CL--NGATCDSDGLNGTCICAPGFTGEECDIDINECDSNPCHHGGSCLDQPNGYNCHCPHGWVGANCEI 618 HSP 2 Score: 89.7373 bits (221), Expect = 3.286e-18 Identity = 56/150 (37.33%), Postives = 81/150 (54.00%), Query Frame = 3
Query: 1143 GHGKCYTDFTQKLYSCLCCEGYAGKYCQHE-DPCVAKPCSNNGQCKLIDIGSGMLNHECECQPGYHGKQCEKKINHCQSYPCQNDGACYPELGDFRCQCKEGFSGKQCEINNDECASSPCKNGGKCQDGLNNFKCVCEPGFKGTLCEINI 1589
HG C + T Y CLC GY G YC+ E + C++ PC N C+ D+ +G +EC C Y G CE + C + C N C + + C C GF+G++C+I+ +EC S+PC +GG C D N + C C G+ G CEI++
Sbjct: 478 AHGTCRSVGTS--YKCLCDPGYHGLYCEEEYNECLSAPCLNAATCR--DLVNG---YECVCLAEYKGTHCELYKDPCANVSCLNGATCDSDGLNGTCICAPGFTGEECDIDINECDSNPCHHGGSCLDQPNGYNCHCPHGWVGANCEIHL 620 The following BLAST results are available for this feature:
BLAST of TCONS_00002252 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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