TCONS_00002269 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002269
Unique NameTCONS_00002269
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002269 ID=TCONS_00002269|Name=TCONS_00002269|organism=Clytia hemisphaerica|type=transcript|length=1614bp
aaaacttttaaatatttcctaggATGGATTTCTTGCGAAAATTGTCACCC
ATCGATGTTTTCCCAAAAATTCAATTATGAGACGAAAGAGATCAATGTTG
GATCTTTACTATACGACAAAACCAAAGCACCTGAATATTCAAAGTTAATT
GCTAACATTGTTGAGAAAGACAGCAGATGGCATTACGTTTGTGAAGAAGG
ATTTATTGATATTCCTGACAACCTGAGACATCTAATGACCAAAAACCATA
AAGTTCCGTACTTAAAAATTGCTGGTATAGGACCTCATTATATCCCGAAA
ATGAGATGTGCCCCAAAGGAAGATCCTACAGTCAAACCACTTTATTATAT
CGGACAATATAAAGGGACATATATGATGGCAAAACAATATTCATTCCAGG
ATCCACATTTCTATTTGCGTTTCAAGACGGACGGTGGGGGTGTCACTCAT
CTTGAGACTGTTATCATTGGGAAATTTTATCCTTGTCTTGAATTGGCTCA
TCATGAGTATAATGGGTATGCTTCTTCATTACTTGGTGTTTATAACAAGG
TTCAAATACATGATCATCTCCAATTTCATCCGTTTTGGGCTCACCAATAT
CTTTCCACCAAAGAACCACTTCACGAGCCTCGAGTTGTTATTGAGATGGA
GAAGAGGTTATTTTTGTCACAGAAGAAACAATTAGACTTTACCATGGACT
TTTAAGAATTTTACTGAATCAActtttgaagattctgaaaggcaTGCTGT
CTTTAAGTTAGCAGATCACGTGTTTGTGCCAGTTGGTGTCTTCATCTATA
TGGggaaatattattttgaatcaagtctcgttttcaaacaaaatgcttgG
CCAGACTTGATTAAATACGGCTTGCCAATAAAGCCAGCGGAGCAGATATA
TCATGTTGAAGAGAGTTACTTGGAGGCTGTAAAACACATAGGAAAGgTGT
CCTTTACAACATCACATGGAAGATACATAGGGATACGGACTGCAAACAAA
TATGCAATCAAAGCAACAGGAGTCTTCAAAGATATACCTAGTCTCAAAGT
GACCTTGCTTCGTGGAAGAAGATTTGAGTTTAGAATGGACGGACCAAAAC
TTCATCGCGTCGAATTAAATTTTAGGGATACGGAGTGCCAGCCTCTCAAT
GGCGACTTGCACACCAAATGGAAGAACTTGTGGAACGTAATGTGGAAATT
AGGGCGCACTCTGATTATTCGAGTGGGCGTTTTCAAACATGACTCCGGGG
AACAAGCTTATAAATACGATCCTCATGACAATAAAGTTTATTGCCCTAAA
AATCAATTTCGATTGCATCGTGTGACATTCCATCCAGTGGAAAAATACCA
TAAAGTTCAGGTTGCATTTTTTACTACAAATGCACTTGGAGAACGATGGT
ATCATGAGAATTACTCGGTTATGTTATTGAACGACGGTTTTCTTAAAGAA
CTTAGAAAAGGTTTATATTGAGACCTTAAAAAATGAATTCATGGAATATT
GCTCCTACTGGTTtgcgagttttaattttttcttttacgCAATCAAATTT
ATTAACTTATTTTTGTTAGCTTCTTCTTTGTAGAATCTTGAAATTGTCTT
CTTTTATATAAGAG
Run BLAST on NCBI

protein sequence of TCONS_00002269-protein

>TCONS_00002269-protein ID=TCONS_00002269-protein|Name=TCONS_00002269-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
KTFKYFLGWISCENCHPSMFSQKFNYETKEINVGSLLYDKTKAPEYSKLI
ANIVEKDSRWHYVCEEGFIDIPDNLRHLMTKNHKVPYLKIAGIGPHYIPK
MRCAPKEDPTVKPLYYIGQYKGTYMMAKQYSFQDPHFYLRFKTDGGGVTH
LETVIIGKFYPCLELAHHEYNGYASSLLGVYNKVQIHDHLQFHPFWAHQY
LSTKEPLHEPRVVIEMEKRLFLSQKKQLDFTMDF
Run BLAST on NCBI

transcript from alignment at sc0000019:699662..702930+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002269 ID=TCONS_00002269|Name=TCONS_00002269|organism=Clytia hemisphaerica|type=transcript|length=3269bp|location=Sequence derived from alignment at sc0000019:699662..702930+ (Clytia hemisphaerica)
aaaacttttaaatatttcctaggATGGATTTCTTGCGAAAATTGTCACCC
ATCGATGTTTTCCCAAAAATGTAAGTATATAAGAAAAACTAAAGGTCCGC
TCGCATAACTAGATTAATTATAAATGGCTTGCAATAAAATAGGCTCCCCA
GTGGAGGCCCTCATTACGTCAGCACGCCGAAATAACTCTAATCACGCTAT
TACGTCGTGTcagacaaaaattattttatcaaatcacgcatctttgtttt
tgaaatcttAAATCGTTCCACAAACGCCAAGAAACGCCTCACCACGCGAT
GTTGCAAACTACTGAGAGAGCTTATAAAATCCCTATGAAATAAATCTGAA
ATGGAAGATTTTAAACTGGATATCCCTCTTTTTTTACAGTCAATTATGAG
ACGAAAGAGATCAATGTTGGATCTTTACTATACGACAAAACCAAAGCACC
TGAATATTCAAAGTTAATTGCTAACATTGTTGAGAAAGACAGCAGATGGC
ATTACGTTTGTGAAGAAGGATTTATTGATATTCCTGACAACCTGAGACAT
CTAATGACCAAAAACCATAAAGTTCCGTACTTAAAAATTGCTGGTATAGG
ACCTCATTATATCCCGAAAATGAGATGTGCCCCAAAGGAAGATCCTACAG
TCAAACCACTTTATTATATCGGACAATATAAAGGGACATATATGATGGCA
AAACAATATTCATTCCAGGATCCACATTTCTATTTGCGTTTCAAGACGGA
CGGTGGGGGTGTCACTCATCTTGAGACTGTTATCATTGGGAAATTTTATC
CTTGTCTTGAATTGGCTCATCATGAGTATAATGGGTATGCTTCTTCATTA
CTTGGTGTTTATAACAAGGTTCAAATACATGATCATCTCCAATTTCATCC
GTTTTGGGCTCACCAATATCTTTCCACCAAAGAACCACTTCACGAGCCTC
GAGTTGTTATTGAGATGGAGAAGAGGTTATTTTTGTCACAGAAGAAACAA
TTAGACTTTACCATGGACTTTTAAGAATTTTACTGAATCAActtttgaag
attctgaaaggcaTGCTGTCTTTAAGTTAGCAGATCACGTGTTTGTGCCA
GTTGGTGTCTTCATCTATATGGggaaatattattttgaatcaagtctcgt
tttcaaacaaaatgcttgGCCAGACTTGATTAAATACGGCTTGCCAATAA
AGCCAGCGGAGCAGATATATCATGTTGAAGAGAGTTACTTGGAGGCTGTA
AAACACATAGGAAAGGTAGGTCTGATCCGTTATGTTCTTCTTTGAAAAGC
AAAATGCCGTAAATTGATTAATTCGCATTTTTATAACGgggttttaaaat
gaaattattgatatataatataacaagtagactggagtcgtttataatgc
gtgtaatactaataataataatatacgggatttagtttgtataaacgact
ggaagaatccggtgttccagtcttatagatacaggggctagctacgcaga
aacttgcgtagcgNNNNNNNNNNNNNNNNNNNNNNNNataacaaactctc
aaaacaaaatcaactcaaatgaaaaactttcaatacacaaatccacatac
atgtttttctcaagaattattttgagcgggaaaaagattataaatgcaaa
tattgacacttttcttttgtttggagttagtgcacaaaggtttctagacg
actaaaattggaTTCCAAATGGGGATGAGAACAAACCCGATATTGTATGG
TAACTTCCCACCAGGGGCGAAATTCCAGTGAGGCTTGGGTGACTAAAGGA
TGCATAAAGTAATATTGAAaactctttctttttattttccaggTGTCCTT
TACAACATCACATGGAAGATACATAGGGATACGGACTGCAAACAAATATG
CAATCAAAGCAACAGGAGTCTTCAAAGATATACCTAGTCTCAAAGTGACC
TTGCTTCGTGGAAGAAGATTTGAGTTTAGAATGGACGGACCAAAACTTCA
TCGCGTCGAATTAAATTTTAGGGATACGGAGTGCCAGCCTCTCAATGTAA
GTTGAGAACACCCTGCtggcacacagcgttgtttcaacgttcatctaacg
ttatatgaacgttgtgaaTGTTCGAAAAACGttcaaacaacgttgtgtgc
cagctgggcaggTCCTAAAATTTTGACGCTGAGCCAAATCAATCAAACAG
CTCTTATCTACAATCGAACGTGTAAACTAAGGTCGTGTGGGAAAAAAGCT
TATTCCATGTCCATAAAAAACTACCTGATCACTCATATCTCTAAAAGTCT
ctgtaatacaccttttcgaccgtagtcgcgcgggcattttttgtcaactt
tatcccactaaaaccgtcccaatccttttttgacgcatttttctattgtc
tattgaTGCGAAataaggactgggacggttttagtgggataaagcggaca
aaaaaatgcccgcgcgactatgatcgaaaaggtgtattgttggTATTTTT
GCGAAAGGAGTGAtccttgggggtaattgacaatttataattatgATTGC
Tctgaaaatgacattcttagcttcagtagcaaaatttcatgatgttgata
ttcttagcatgttcttaattttttggtcattttcatcatggatattcgta
taaagtgtattcttataaaaaagaacgcGTAGAACATCATTGCAACGTCC
ATCTGACACCCCTAACGTTCataaaacgttagatgaatgttaaaacaacg
ttCTGCACTACCTAGGATCGTAATTAAAAGATATGTTTCATTTTACAATC
TACAGGGCGACTTGCACACCAAATGGAAGAACTTGTGGAACGTAATGTGG
AAATTAGGGCGCACTCTGATTATTCGAGTGGGCGTTTTCAAACATGACTC
CGGGGAACAAGCTTATAAATACGATCCTCATGACAATAAAGTTTATTGCC
CTAAAAATCAATTTCGATTGCATCGTGTGACATTCCATCCAGTGGAAAAA
TACCATAAAGTTCAGGTTGCATTTTTTACTACAAATGCACTTGGAGAACG
ATGGTATCATGAGAATTACTCGGTTATGTTATTGAACGACGGTTTTCTTA
AAGAACTTAGAAAAGGTTTATATTGAGACCTTAAAAAATGAATTCATGGA
ATATTGCTCCTACTGGTTtgcgagttttaattttttcttttacgCAATCA
AATTTATTAACTTATTTTTGTTAGCTTCTTCTTTGTAGAATCTTGAAATT
GTCTTCTTTTATATAAGAG

Coding sequence (CDS) from alignment at sc0000019:699662..702930+

>TCONS_00002269 ID=TCONS_00002269|Name=TCONS_00002269|organism=Clytia hemisphaerica|type=CDS|length=1410bp|location=Sequence derived from alignment at sc0000019:699662..702930+ (Clytia hemisphaerica)
aaaacttttaaatatttcctaggATGGATTTCTTGCGAAAATTGTCACCC
ATCGATGTTTTCCCAAAAATTCAATTATGAGACGAAAGAGATCAATGTTG
GATCTTTACTATACGACAAAACCAAAGCACCTGAATATTCAAAGTTAATT
GCTAACATTGTTGAGAAAGACAGCAGATGGCATTACGTTTGTGAAGAAGG
ATTTATTGATATTCCTGACAACCTGAGACATCTAATGACCAAAAACCATA
AAGTTCCGTACTTAAAAATTGCTGGTATAGGACCTCATTATATCCCGAAA
ATGAGATGTGCCCCAAAGGAAGATCCTACAGTCAAACCACTTTATTATAT
CGGACAATATAAAGGGACATATATGATGGCAAAACAATATTCATTCCAGG
ATCCACATTTCTATTTGCGTTTCAAGACGGACGGTGGGGGTGTCACTCAT
CTTGAGACTGTTATCATTGGGAAATTTTATCCTTGTCTTGAATTGGCTCA
TCATGAGTATAATGGGTATGCTTCTTCATTACTTGGTGTTTATAACAAGG
TTCAAATACATGATCATCTCCAATTTCATCCGTTTTGGGCTCACCAATAT
CTTTCCACCAAAGAACCACTTCACGAGCCTCGAGTTGTTATTGAGATGGA
GAAGAGGTTATTTTTGTCACAGAAGAAACAATTAGACTTTACCATGGACT
TTTAAaaaacttttaaatatttcctaggATGGATTTCTTGCGAAAATTGT
CACCCATCGATGTTTTCCCAAAAATTCAATTATGAGACGAAAGAGATCAA
TGTTGGATCTTTACTATACGACAAAACCAAAGCACCTGAATATTCAAAGT
TAATTGCTAACATTGTTGAGAAAGACAGCAGATGGCATTACGTTTGTGAA
GAAGGATTTATTGATATTCCTGACAACCTGAGACATCTAATGACCAAAAA
CCATAAAGTTCCGTACTTAAAAATTGCTGGTATAGGACCTCATTATATCC
CGAAAATGAGATGTGCCCCAAAGGAAGATCCTACAGTCAAACCACTTTAT
TATATCGGACAATATAAAGGGACATATATGATGGCAAAACAATATTCATT
CCAGGATCCACATTTCTATTTGCGTTTCAAGACGGACGGTGGGGGTGTCA
CTCATCTTGAGACTGTTATCATTGGGAAATTTTATCCTTGTCTTGAATTG
GCTCATCATGAGTATAATGGGTATGCTTCTTCATTACTTGGTGTTTATAA
CAAGGTTCAAATACATGATCATCTCCAATTTCATCCGTTTTGGGCTCACC
AATATCTTTCCACCAAAGAACCACTTCACGAGCCTCGAGTTGTTATTGAG
ATGGAGAAGAGGTTATTTTTGTCACAGAAGAAACAATTAGACTTTACCAT
GGACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001201XLOC_001201Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002269-proteinTCONS_00002269-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002269-exon-sc0000019-1491911889:699662..699731TCONS_00002269-exon-sc0000019-1491911889:699662..699731Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1510915933:699662..699731TCONS_00002269-exon-sc0000019-1510915933:699662..699731Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1575043694:699662..699731TCONS_00002269-exon-sc0000019-1575043694:699662..699731Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1491911889:700051..700926TCONS_00002269-exon-sc0000019-1491911889:700051..700926Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1510915933:700051..700926TCONS_00002269-exon-sc0000019-1510915933:700051..700926Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1575043694:700051..700926TCONS_00002269-exon-sc0000019-1575043694:700051..700926Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1491911889:701504..701707TCONS_00002269-exon-sc0000019-1491911889:701504..701707Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1510915933:701504..701707TCONS_00002269-exon-sc0000019-1510915933:701504..701707Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1575043694:701504..701707TCONS_00002269-exon-sc0000019-1575043694:701504..701707Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1491911889:702467..702930TCONS_00002269-exon-sc0000019-1491911889:702467..702930Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1510915933:702467..702930TCONS_00002269-exon-sc0000019-1510915933:702467..702930Clytia hemisphaericaexon
TCONS_00002269-exon-sc0000019-1575043694:702467..702930TCONS_00002269-exon-sc0000019-1575043694:702467..702930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:699662..702930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0340525	0.0269087	0.324642	0.273534	0.106393	0.131785	0.332575	0.0336341	0.100762	0	0	0	0	0.0194292	0.0268424	0	0	0	0.347428	0.447472	0.325331	0.556505	58.9997	49.959	0.25224	0.142774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002269 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top