TCONS_00002400 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002400
Unique NameTCONS_00002400
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002400 ID=TCONS_00002400|Name=TCONS_00002400|organism=Clytia hemisphaerica|type=transcript|length=743bp
NNCGGCATGTGTAATACAGAGGCCCCGTAAGTACAAAGGCTAACATAGGC
CCTAGGAAGAGAATCTAGGCGTCACAATCATGTGACCAACCGCCAAATAA
AGGAACGGCCAAAGAGCGACCCCAATGCCACACCTACAGGGAGGGAAGAA
CAGTACTAGACGAACTAGTGTGTGGGATGCCGAAAGAAAACAAACTAATT
AATAAGTTGAGTAAATACTAATATTACGGATGTATATAGAAAATACTTGA
GTATAAAGAGCGATTCTGATATGATAACTATAtgctaaaataagaacata
agtaTACCATTGAAATATactatatgaaaaaaaaacaaaaaaaaaacagg
ctaCCGCAGAATGTGAGTACCTAGATATAGTCGTATGCTAAATGATGCAC
GAGGAGTAGGCCCGAATGAAAAAGGACGTCGAGTAGTAAGTGACTAGTAA
GTGCTAGAAGTGCCGACGCAGTAGAGCACAGTAGAGATGTAAATAGGGCA
TAATTGTACGCTTGAATCCGACGAGGTAGATGCAAATAATATAATAAATA
CTAGAAAGGCTATTGTTGCTGAGGTGCATCTGGATTCCACAGTCCATGCC
CAAGGGTTTTAGTTCGACACAATAATTGTCCTGTTTGCCTGATGGTTTTA
TCTGGGATACGAATGTAAGTCTCAAAACAAGTGCTGTTCCATCTACCAAG
TTGCTTAATTAGCCAGCTTGGTAGTCCTGCTGCTGCTGCTGTT
Run BLAST on NCBI

transcript from alignment at sc0000019:804639..805381

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002400 ID=TCONS_00002400|Name=TCONS_00002400|organism=Clytia hemisphaerica|type=transcript|length=743bp|location=Sequence derived from alignment at sc0000019:804639..805381 (Clytia hemisphaerica)
AACAGCAGCAGCAGCAGGACTACCAAGCTGGCTAATTAAGCAACTTGGTA
GATGGAACAGCACTTGTTTTGAGACTTACATTCGTATCCCAGATAAAACC
ATCAGGCAAACAGGACAATTATTGTGTCGAACTAAAACCCTTGGGCATGG
ACTGTGGAATCCAGATGCACCTCAGCAACAATAGCCTTTCTAGTATTTAT
TATATTATTTGCATCTACCTCGTCGGATTCAAGCGTACAATTATGCCCTA
TTTACATCTCTACTGTGCTCTACTGCGTCGGCACTTCTAGCACTTACTAG
TCACTTACTACTCGACGTCCTTTTTCATTCGGGCCTACTCCTCGTGCATC
ATTTAGCATACGACTATATCTAGGTACTCACATTCTGCGGtagcctgttt
tttttttgtttttttttcatatagtATATTTCAATGGTAtacttatgttc
ttattttagcaTATAGTTATCATATCAGAATCGCTCTTTATACTCAAGTA
TTTTCTATATACATCCGTAATATTAGTATTTACTCAACTTATTAATTAGT
TTGTTTTCTTTCGGCATCCCACACACTAGTTCGTCTAGTACTGTTCTTCC
CTCCCTGTAGGTGTGGCATTGGGGTCGCTCTTTGGCCGTTCCTTTATTTG
GCGGTTGGTCACATGATTGTGACGCCTAGATTCTCTTCCTAGGGCCTATG
TTAGCCTTTGTACTTACGGGGCCTCTGTATTACACATGCCGNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001287XLOC_001287Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002400-exon-sc0000019-1491911889:804639..805381TCONS_00002400-exon-sc0000019-1491911889:804639..805381Clytia hemisphaericaexon
TCONS_00002400-exon-sc0000019-1510915933:804639..805381TCONS_00002400-exon-sc0000019-1510915933:804639..805381Clytia hemisphaericaexon
TCONS_00002400-exon-sc0000019-1575043694:804639..805381TCONS_00002400-exon-sc0000019-1575043694:804639..805381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:804639..805381 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.25545	3.43372	1.80538	1.5455	25.4941	22.2481	22.9497	28.9187	16.2607	18.1134	19.9213	16.2808	21.7936	21.8509	12.3093	13.0895	20.054	19.5161	20.8133	26.3628	24.1647	27.0561	9.44153	13.5984	18.9741	21.7939	51.293	48.8549	16.1362	13.5007
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002400 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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