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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002330 ID=TCONS_00002330|Name=TCONS_00002330|organism=Clytia hemisphaerica|type=transcript|length=2089bp
ATTTCACTCAGGAATTGTTCATCAAATTGAATTCTGAAGATTGAAGTTTA
ATTTGTTGAGATCTTGTTGTtatcaaaatctttaaagtCGACCTATCCAG
AAAATCTTTAAGCATGCCTTTGATTGGAATCTTCATCATGAGTGGTGTGT
GCGGTGTCGCTTCCACCTGGTTTCTATGGGTGTGGTCAAACATACTGAAA
GAACGTTACTCAAAACACGAATGATTCATTATTATCGCCAGTTGAACTTA
TGTAGAAATAGAAATTCATTAAACGACTGTCATACAAtcaatagaattca
aaataaCGACTGACTGACGCCCGAATGACGTTCAAACAATGCTACATTAG
CAGGGAGCATTTTTAGTAATATGAGCTAGAAGACGTTAATGgcaaatttg
ttcaatttaCGTTTAGAGTTTAACATGAAGCAACACGTTTTAAACCACGT
CGAAAAATGACTATCTAGAAGATTCTTAACTTGATGCCAATTCAATGCAC
GGTTTTTCCAATAAAGGTAATAACGTCAAAATTATGTCCATTTAACGTCA
ATAACATCAAAGGATACGTTGTGAAAAAACATGAAGAAAGCTGTATTTAC
TGTAAAGTCATCACATCATTCAAAAGGTGTCATTCAACTTGTATTACTTT
ATCACGATCGGCTTTCACTCGTTGGATGTACTGTCACAGGGTTCAAAATG
GTATTTCCTTTCCAGTTCCGTATAAATGCTTTCCGGGCTCTCTTATTAAC
GGAAACAAAGATAACCGCATTAACAACCGAATTGGTATGAGCAATCAACA
CGCTTAAATAAAATCCAAATTCAAGCCAACTTCTCCATTTATCACTGGCA
TACGGATACGCAATATGGTACAAGGCGTGCAATATGATGTAGATTGTATC
AAACAGACCTATAGAAAGAAGAACCAATTTCGCTAATCTTGATACTGTGT
TATCAACCAACTCTAGAATATGTTTATTATTTGCATCTTTACGATATCTT
TTGATCTTCAAAGCAGCTAGAATGTAAGATGACATTAACCCAATGACAAT
AAACACATCGACTATGAGAGCTACCAATACACCGATATCGAAGAAATCCA
TAACGGTACCCAAAGTAAACATCAACGCATTGAAAGTCGCAAAAAATAAA
GCTAGCAGGGAAAATAAGTTAGCATGTTTCATGTTTACTTTTGTTTTATA
CCTTGTCATCAATTTGACACGCGCATAACGATCAAACCCAATTAATACTG
TTAAGAACGCGGAAAGGTGACCAAAAAACGCGGTAAAGAACTGAGCAAGT
GTTTCGATCCCGCATATTCTTGTGTAGTGGTATTTAGTCAATAATAGCGC
CTCAAATAATGGTGTGACCAATGAAATACAAAGATCAGACATACTAAGAT
ATAAAATCAAGCGCATCGATGGTATACGGACTTGTTTTGAAACGAAAAGa
attgtaatgacaagacaatTTGATATTAAGTTTGCGATACAGTTAACAAT
AAATGCgtacgtcagcaaaatttttttttgttcttcagAGATACCTTCGC
GATGCATGTAAGCATTTCGACACAGTTCTTTTGTTGTCGTGTTCCCATGG
TGATCCATAATGGTGCTTTAAATTTTTTGCCCCCGCAAGGAGCGCAGCGA
CTGAGGAGGCACTCGTAGCTTCACGCAATATATTGGACTGGAATCTCGAT
TTTTTGCGaattgtttttgtttttgtgtttgcgtcgtaatcggctttccg
gccaattaagtgttccgcaaaaatatggcggtaaattatacagcggtaaa
tgttatacatattctCATATTACGTTAattgctattaccattattgtgta
ttacattttattagtttcgatttagcattgaaaagctgaagcgagtgtta
taaatgcaaattatagaaaaagtatagtgattacaccataacacgaatta
caatattaataaatcaaaacaaacaaaatggcagactggttatgatgatg
agctgattcgtTGACtggaaaagtgttttgtatgtcaaattttgtttctt
gtctttcaaactgaatactaaatactgtaatttagtcag Run BLAST on NCBI transcript from alignment at sc0000019:839269..843395- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002330 ID=TCONS_00002330|Name=TCONS_00002330|organism=Clytia hemisphaerica|type=transcript|length=4127bp|location=Sequence derived from alignment at sc0000019:839269..843395- (Clytia hemisphaerica)
ATTTCACTCAGGAATTGTTCATCAAATTGAATTCTGAAGATTGAAGTTTA
ATTTGTTGAGATCTTGTTGTTATCAAAATCTTTAAAGTCGACCTATCCAG
AAAATCTTTAAGGTTGTATTTATTTGTAGTCTCCATGATTTTATCTTGAC
CACTTTTATACAGTTGACTCTCGCTAATTCGAGCTTGTTTGGGAAACCTA
ATAGCGTNAGAAACTTGAAAGAAACTTGGACGAAGTGAACTTTTGTCGTA
ACCAAGCACTATTGGTTGCAATAGCGCACCGCGCTGAATCTAAAAGTAGA
TTTTATTTTTGACATAATCATTACTCTCGATGTGTTTGTACGAGTTCCAA
TCCCATCAACCTTTGCGTTAATCTCTTTTGCACGTTAATGGCATCATTTG
ACAAAAGATATATAACAACTTGCACGTATCTTTAATTGAGCCGCGTTGAA
TTGTGGGATTGCAACTCGTACAAATTTCAAAAAAAGTGAAAAGTAATAAT
TATGACGTAAGCGTTGCGGAGCGCCATTTGTTCGAATACACAAGTAGACT
GGCACGCCAGTCGGGCCGGAACGGTATCACGCGGGAAAATTGAGCGTAGG
AGTTAGGTAAGCGTAGGAAGAAATTTTGTCGGCGGCAAGGGCTGAAATCA
GCAGCCTCTCACCAACTTTTGCTCGTTCTCCTACGCAGCTCCTATTATAG
CAAACGCCCGCCGCCTTTATGTTCCCGCCCTGGACATGATTAATTAACAG
ACTAGTTTGCTAGTCTAATACACAAGTTGCAAAATTAAAGTCTGAAGACA
AATCACGTTTTTACTCGAAATTTTTATGTGCTTATATTACATGACATTTA
TTTCTGATTGGTTCGAATTTATTGACACTAATAAAGTTATCAGCTGTTGT
AAAGCAAGCAACATGGGAATAAAATCACGTGAACTTTTTCGAGTACACGT
TTTTTTTTTATAAGAACGTCAAAAATTTTCGAAGCCTTTAGATGTTCTTA
GTATTTTGGATTTGAAGCCTAAAAATGTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
TCCAAAGCCTTAGAATGTTCTTAGAATGTTCTTAAATTTTTGGGCCTCGA
AGCCTTATGTTCTTATATAGTTTGTTCTTATAAAAAAAAACGTGTAATCT
CATGTTTTGACTGCATTGATATAATTTTGCAACTTGTGTATTGAAGATAG
GTTTTGAATGAAAAAAATGTTTTATTTCTTACCAGGAACCGAGATTAATT
CAGGTTCAAGATATACCTTAAAGGAAGAAATTTTGGCGGAAAGTAAATTT
GGCGGATTTGGCGGATTTGGCCAGAATCCGCCAAATTAAGTTCCCGCCAA
AATTTCTTTTTTCGCCATCCGCCAAATTAAACATTTTGAAAATATGATCT
CTTTTAGGTGGTTTTGCATTTTTTTTGCGGTTTTTACGCCATTTTAAGGA
TAAATTTATCAGCAAACGCCAAATTAAATTCCCGCTAAATTTAGTTTTTT
CGTCCATCCGCCAAATTAAATTCCCTTTAAAAAACTTTTTTGGCCATCCG
CCAAAATTTCTTCCTTTAAGGTAGTATAATTCGAATAATAGAAATTCGAT
TTTTCCAAAGTCCACTGTAATATATTTGTTCCTAATCTTTAATTGTTCTT
ATTTTTGTTTTAATTTATGTTTTTTTTGCAATGGTGTTTATTTGTTTCCC
TTTAAAAGTTTCATGTGTTTCGAACCCTATGATCAAACAGATTATGGATA
AAACACAGTTAAATTTTTCTGCCAGAAAATCTCAGCATTTGAAAAATAGC
TCCTCTAAAATTCTAAAGTTTAGTACATTTAAATTATATTCTGAATTTAC
TTTATATTTTTCTCTACTCAGCATGCCTTTGATTGGAATCTTCATCATGA
GTGGTGTGTGCGGTGTCGCTTCCACCTGGTTTCTATGGGTGTGGTCAAAC
ATACTGAAAGAACGTTACTCAAAACACGAATGATTCATTATTATCGCCAG
TTGAACTTATGTAGAAATAGAAATTCATTAAACGACTGTCATACAATCAA
TAGAATTCAAAATAACGACTGACTGACGCCCGAATGACGTTCAAACAATG
CTACATTAGCAGGGAGCATTTTTAGTAATATGAGCTAGAAGACGTTAATG
GCAAATTTGTTCAATTTACGTTTAGAGTTTAACATGAAGCAACACGTTTT
AAACCACGTCGAAAAATGACTATCTAGAAGATTCTTAACTTGATGCCAAT
TCAATGCACGGTTTTTCCAATAAAGGTAATAACGTCAAAATTATGTCCAT
TTAACGTCAATAACATCAAAGGATACGTTGTGAAAAAACATGAAGAAAGC
TGTATTTACTGTAAAGTCATCACATCATTCAAAAGGTGTCATTCAACTTG
TATTACTTTATCACGATCGGCTTTCACTCGTTGGATGTACTGTCACAGGG
TTCAAAATGGTATTTCCTTTCCAGTTCCGTATAAATGCTTTCCGGGCTCT
CTTATTAACGGAAACAAAGATAACCGCATTAACAACCGAATTGGTATGAG
CAATCAACACGCTTAAATAAAATCCAAATTCAAGCCAACTTCTCCATTTA
TCACTGGCATACGGATACGCAATATGGTACAAGGCGTGCAATATGATGTA
GATTGTATCAAACAGACCTATAGAAAGAAGAACCAATTTCGCTAATCTTG
ATACTGTGTTATCAACCAACTCTAGAATATGTTTATTATTTGCATCTTTA
CGATATCTTTTGATCTTCAAAGCAGCTAGAATGTAAGATGACATTAACCC
AATGACAATAAACACATCGACTATGAGAGCTACCAATACACCGATATCGA
AGAAATCCATAACGGTACCCAAAGTAAACATCAACGCATTGAAAGTCGCA
AAAAATAAAGCTAGCAGGGAAAATAAGTTAGCATGTTTCATGTTTACTTT
TGTTTTATACCTTGTCATCAATTTGACACGCGCATAACGATCAAACCCAA
TTAATACTGTTAAGAACGCGGAAAGGTGACCGNTTATACATTGTCATCAA
TTTGACACGCGCATAACGATCAAACCCAATTAATACTGTTAAGAATGCGG
AAAGGTGACCAAAAAACGCGGTAAAGAACTGAGCAAGTGTTTCGATCCCG
CATATTCTTGTGTAGTGGTATTTAGTCAATAATAGCGCCTCAAATAATGG
TGTGACCAATGAAATACAAAGATCAGACATACTAAGATATAAAATCAAGC
GCATCGATGGTATACGGACTTGTTTTGAAACGAAAAGAATTGTAATGACA
AGACAATTTGATATTAAGTTTGCGATACAGTTAACAATAAATGCGTACGT
CAGCAAAATTTTTTTTTGTTCTTCAGAGATACCTTCGCGATGCATGTAAG
CATTTCGACACAGTTCTTTTGTTGTCGTGTTCCCATGGTGATCCATAATG
GTGCTTTAAATTTTTTGCCCCCGCAAGGAGCGCAGCGACTGAGGAGGCAC
TCGTAGCTTCACGCAATATATTGGACTGGAATCTCGATTTTTTGCGAATT
GTTTTTGTTTTTGTGTTTGCGTCGTAATCGGCTTTCCGGCCAATTAAGTG
TTCCGCAAAAATATGGCGGTAAATTATACAGCGGTAAATGTTATACATAT
TCTCATATTACGTTAATTGCTATTACCATTATTGTGTATTACATTTTATT
AGTTTCGATTTAGCATTGAAAAGCTGAAGCGAGTGTTATAAATGCAAATT
ATAGAAAAAGTATAGTGATTACACCATAACACGAATTACAATATTAATAA
ATCAAAACAAACAAAATGGCAGACTGGTTATGATGATGAGCTGATTCGTT
GACTGGAAAAGTGTTTTGTATGTCAAATTTTGTTTCTTGTCTTTCAAACT
GAATACTAAATACTGTAATTTAGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002330-exon-sc0000019-1575043694:843284..843395 | TCONS_00002330-exon-sc0000019-1575043694:843284..843395 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1575043694:840171..841324 | TCONS_00002330-exon-sc0000019-1575043694:840171..841324 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1575043694:839269..840091 | TCONS_00002330-exon-sc0000019-1575043694:839269..840091 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1510915933:843284..843395 | TCONS_00002330-exon-sc0000019-1510915933:843284..843395 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1510915933:840171..841324 | TCONS_00002330-exon-sc0000019-1510915933:840171..841324 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1510915933:839269..840091 | TCONS_00002330-exon-sc0000019-1510915933:839269..840091 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1491911889:843284..843395 | TCONS_00002330-exon-sc0000019-1491911889:843284..843395 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1491911889:840171..841324 | TCONS_00002330-exon-sc0000019-1491911889:840171..841324 | Clytia hemisphaerica | exon |
| TCONS_00002330-exon-sc0000019-1491911889:839269..840091 | TCONS_00002330-exon-sc0000019-1491911889:839269..840091 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000019 | supercontig | sc0000019:839269..843395 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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