TCONS_00002345 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002345
Unique NameTCONS_00002345
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length568

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002345 ID=TCONS_00002345|Name=TCONS_00002345|organism=Clytia hemisphaerica|type=transcript|length=568bp
CTAAAATGTGACACAGAGTTTCCTTAAAAACCACCAAAAAATCCAAAGTC
AATTCGAAAGGTTTTGAACCTTTTTGGGATATTTTATGATGATTTTTAGT
ACAAATCCCTTgcaaataagattttcaaaaagtgttcaaacaataaattt
tgacctGTTAAATTCAAATCTTCGATTGCACGATTCAAAGCAAATTTAAT
ACATTCTTCGAAAGTTTTACCTTTTGCAGAAGATTCAACGCTATCATAAA
GCTCTTTTTTCTGGATTAAATGTTCAGCTTGTTTAACCTTTTCCTCATTT
TCAGCTAATTGTGAGGTTAGTTCCTCAGCATTTTTCTTTTGGATTTCTGC
GAGCCTTTTCTGTTTCTCTAGATCTTTTTCTGCTTCCTCAGCTTTTTTCT
TTTGGATTTCTGCGAGCCTTTTCTGTTTCTCTCGATCTGTAAAAGatcgt
gaaaagtagataacgAAAGTGGTgttgtttttaaagttttgtcAATTATA
ACCTCTCATAATGGTCCTGATAGCCATATGCTTATTTTCTGGTAACGTCA
TAAGCTGCTCATCAATTT
Run BLAST on NCBI

transcript from alignment at sc0000019:972428..972995-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002345 ID=TCONS_00002345|Name=TCONS_00002345|organism=Clytia hemisphaerica|type=transcript|length=568bp|location=Sequence derived from alignment at sc0000019:972428..972995- (Clytia hemisphaerica)
CTAAAATGTGACACAGAGTTTCCTTAAAAACCACCAAAAAATCCAAAGTC
AATTCGAAAGGTTTTGAACCTTTTTGGGATATTTTATGATGATTTTTAGT
ACAAATCCCTTGCAAATAAGATTTTCAAAAAGTGTTCAAACAATAAATTT
TGACCTGTTAAATTCAAATCTTCGATTGCACGATTCAAAGCAAATTTAAT
ACATTCTTCGAAAGTTTTACCTTTTGCAGAAGATTCAACGCTATCATAAA
GCTCTTTTTTCTGGATTAAATGTTCAGCTTGTTTAACCTTTTCCTCATTT
TCAGCTAATTGTGAGGTTAGTTCCTCAGCATTTTTCTTTTGGATTTCTGC
GAGCCTTTTCTGTTTCTCTAGATCTTTTTCTGCTTCCTCAGCTTTTTTCT
TTTGGATTTCTGCGAGCCTTTTCTGTTTCTCTCGATCTGTAAAAGATCGT
GAAAAGTAGATAACGAAAGTGGTGTTGTTTTTAAAGTTTTGTCAATTATA
ACCTCTCATAATGGTCCTGATAGCCATATGCTTATTTTCTGGTAACGTCA
TAAGCTGCTCATCAATTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001237XLOC_001237Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002345-exon-sc0000019-1575043694:972428..972995TCONS_00002345-exon-sc0000019-1575043694:972428..972995Clytia hemisphaericaexon
TCONS_00002345-exon-sc0000019-1510915933:972428..972995TCONS_00002345-exon-sc0000019-1510915933:972428..972995Clytia hemisphaericaexon
TCONS_00002345-exon-sc0000019-1491911889:972428..972995TCONS_00002345-exon-sc0000019-1491911889:972428..972995Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000019supercontigsc0000019:972428..972995 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103819	0	0	0	0.357725	0.405908	0.805558	0.44395	0.424605	0.406872	0.0674377	0.697969	0.394348	0.341278	0.567876	0.496428	0.296747	0.49465	0.105052	0.468125	0.109525	0.2398	0.453238	0.2095	0.530514	0.392296	0.542028	0	0.614834	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002345 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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