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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002417 ID=TCONS_00002417|Name=TCONS_00002417|organism=Clytia hemisphaerica|type=transcript|length=3387bpRun BLAST on NCBI protein sequence of TCONS_00002417-protein >TCONS_00002417-protein ID=TCONS_00002417-protein|Name=TCONS_00002417-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1128bp LTFELGLTQFELADVALSTLEKWYKESCSDRNHTQDMNDLLSEILPSLDDRun BLAST on NCBI transcript from alignment at sc0000020:61505..140304+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002417 ID=TCONS_00002417|Name=TCONS_00002417|organism=Clytia hemisphaerica|type=transcript|length=78800bp|location=Sequence derived from alignment at sc0000020:61505..140304+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000020:61505..140304+ >TCONS_00002417 ID=TCONS_00002417|Name=TCONS_00002417|organism=Clytia hemisphaerica|type=CDS|length=74448bp|location=Sequence derived from alignment at sc0000020:61505..140304+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002417 vs. Swiss-Prot (Human)
Match: PRKDC (DNA-dependent protein kinase catalytic subunit OS=Homo sapiens GN=PRKDC PE=1 SV=3) HSP 1 Score: 491.5 bits (1264), Expect = 2.572e-146 Identity = 355/1132 (31.36%), Postives = 576/1132 (50.88%), Query Frame = 3
Query: 3 LTFELGLTQFELADVALSTLEKWYKESCSDRNHTQDMNDLLSEILPSLDDYLRSELNSNEPNEDFSISKASMTRSEKKVKRVPIRYLKALIKANKQSLQSPLEKLKLRILRFIGSLGG-ISSTALAQTTEDASLQNTIAWNNEELLSFQLPFPDMKAAIYLDSFLPRVVELAQTSVNRQTKVVACELLHALVLFMIGKSVHDPIQHKKQVSMEALYKRVFPAILKLACGSEQVAEQLFSPLVFQIIHWMSGNTKYESPETVVLLNTLLDGVANEDDCSLRDFSAKCIKEFFQWSIKHLSPKQLEKNPANPKSLFKRLSSLALHPSPFKRLGAAICFNNIYSIFREEDTLVSKFTLELLVVYIKSLSLAHKDEVSLGTVEQCQNVLNXXXXXXXXXXXXXXXXXXDRNVPTDVRVASKEGFTVYHINLLLIKYCGAPQTACRHACMKLFNQFLPLQEDVDSVSNWMKAFANKEGGKFFTARCFEKGGISK-AGIINFPTLTEVITKNQLSMESLSQWLENLLAALDNYCWVLGAKYLTCAQLLKDNPRTNLLKSLSYFLDTICLNTI---EGIFKNCNLNDDITITPNQLDAFNKLRCTVVVRTINFLTLSLFDGYITSHQNQW----IDVLNEKLFRIVTLCIMKPSRVGFNITDKIVLEKLPGELEKFSNALMKFGPLDVKKQFTDALKLLLK-----QPEFDLLTYLPLDLTHSIDVCRTLDLGHLLSGLMFLSGLNVLNDLIPTQNRAHLH---TSLLGTLTRSLVPXXXXXXXXXXXXXXXXDPQLKSLSEKILRFVLILDAESKKIVDLLLDTSTITLEGHTDKRGSTFYHSFPQIFNEHFISTPN---LFNV------LVKPGVANAELILTIIHGICNLILRTNDKERNKNSMNFCRFLASNLTNLSHWSHGDD----DXXXXXXXXXXXXXXXHPDVIKDKGFLTS--------TVQIGFKEPTKSKLAVKSRACDVIPHVLKHCSRDQTEKVCQMVKNYVAEAFPFSSEDLTVGTTKYLEYMAQLDQLCRMLTTCGEPGLFKAMISIMVRETTEVYQQXXXXXXXXXXXXXXXXXXASEVFNYCMEVFKDEISYTNQIRQMAIERLCLPLLEHTSSKTLEEFF 3284
+ F+LGL+ LA+V L+ LE+W S H M +ILP LD YL++ S+E ++ +S S ++K +V +++LK + S LE++++R+++ +GSLGG I+ L T+ D +++ +AW+ E+ LSF +PF +MK I+LD FLPRV ELA T+ +RQTKV ACELLH++V+FM+GK+ P + M LYKR FP +L+LAC +QV QL+ PLV Q+IHW + N K+ES +TV LL +LDG+ + D +LRDF +CI+EF +WSIK ++P+Q EK+P N KSLFKRL SLALHP+ FKRLGA++ FNNIY FREE++LV +F E LV+Y++SL+LAH DE SLGT++QC + ++ I +K + L K R +P ++ + + L+ +CG PQT CRH ++LF +F+PL S + W+K +EG F FE GG + +GI+ PTL + + S+++ WL+ LLAAL+ Y +G + + Q+L +++LLK++++FL++I ++ I E F + +P + + +N +CTVVVR + F T L + W D+ N L R++ + +P+ +GFNI D V+ LP AL K P + D L+ L+ Q +L +D R L ++S L +L++++P+Q+ H T LL + + + P +Q S D K L+ +L +++V LLL+ + ++ +GS + S + F F T N L N+ L++ V N +++ +++G+ + R ++++ L T L HW D D + L+ + F TS T I TK L +K +A ++P + E++ ++++ + FP S + GT ++ Y+ + + L P L + M ++ RE V ++ + ++ + + + E+F+ + + RQ ++R L LL H S L EFF
Sbjct: 754 MAFKLGLSYTPLAEVGLNALEEW---SIYIDRHV--MQPYYKDILPCLDGYLKTSALSDETKNNWEVSALSRA-AQKGFNKVVLKHLKKTKNLSSNEAIS-LEEIRIRVVQMLGSLGGQINKNLLTVTSSDEMMKSYVAWDREKRLSFAVPFREMKPVIFLDVFLPRVTELALTASDRQTKVAACELLHSMVMFMLGKATQMPEGGQGAPPMYQLYKRTFPVLLRLACDVDQVTRQLYEPLVMQLIHWFTNNKKFESQDTVALLEAILDGIVDPVDSTLRDFCGRCIREFLKWSIKQITPQQQEKSPVNTKSLFKRLYSLALHPNAFKRLGASLAFNNIYREFREEESLVEQFVFEALVIYMESLALAHADEKSLGTIQQCCDAID-HLCRIIEKKHVSLNKAKKRRLPRGFPPSA--SLCLLDLVKWLLAHCGRPQTECRHKSIELFYKFVPLLPGNRSPNLWLKDVLKEEGVSFLI-NTFEGGGCGQPSGILAQPTL--LYLRGPFSLQATLCWLDLLLAALECYNTFIGERTVGALQVLGTEAQSSLLKAVAFFLESIAMHDIIAAEKCFGTGAAGN--RTSPQEGERYNYSKCTVVVRIMEFTTTLL-----NTSPEGWKLLKKDLCNTHLMRVLVQTLCEPASIGFNIGDVQVMAHLPDVCVNLMKAL-KMSP------YKDILETHLREKITAQSIEELCAVNLYGPDAQVDRSR---LAAVVSACKQLHRAGLLHNILPSQSTDLHHSVGTELLSLVYKGIAP------GDERQCLPSLDLSCKQLASGLLELAFAFGGLCERLVSLLLNPAVLSTASLGSSQGSVIHFSHGEYFYSLFSETINTELLKNLDLAVLELMQSSVDNTKMVSAVLNGMLDQSFRERANQKHQG-------LKLATTILQHWKKCDSWWAKDSPLETKMAVLALLAKILQIDSSVSFNTSHGSFPEVFTTYISLLADTKLDLHLKGQAVTLLP-FFTSLTGGSLEELRRVLEQLIVAHFPMQSREFPPGTPRFNNYVDCMKKFLDALELSQSPMLLELMTEVLCREQQHVMEELFQSSFRRIARRGSCVTQVG-LLESVYEMFRKDDPRLSFTRQSFVDRSLLTLLWHCSLDALREFF 1840 The following BLAST results are available for this feature:
BLAST of TCONS_00002417 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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