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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002524 ID=TCONS_00002524|Name=TCONS_00002524|organism=Clytia hemisphaerica|type=transcript|length=1004bp
cgaGGAGAGAAGCTTTTTTTAGAGATTTGACGATAAATAGTTTTTGAAAA
GAGATATGGAAAGTTTACAAAGATCTCCAGAAGAATTATTATCAGAGACA
TTACAAGATCTCGTAAAATCGTATGAAGGTTTAAAGCAGAATCTAAACGG
TTATACACAGGCTGTACGttatttgaaaacaaacgattttaacaatgaag
atgaaaaacacGAGAATTACTTGGTGATTTTTCAAGCAGATTCTAAAAAC
ACTTTAAGAGATTTCATTGGTTGTTTTAAAGAGTTGACATCattgattga
aatatttcaagactTCTTCGGTGTGTATCAAGTTGATTTTGAATattggt
gtaaaaatgaatatCAACTACAAACTGTTTCAGAAGATTTTTATAGTGAT
GGGGAAAAGATCGTTCACAACTTGGAAACTGTTTATAACCGATTAAGAAA
ATTAGCCGAAGAGGCTGGGAAAAAGAATGCAGAGACACGTGAACAGGAAT
CTCGCTTAGCTGAGCAAAATTCGAATCTGAAAACTCGCCGCAATGAGGGA
ACAAAGGTTTCATGTAGGTGCGTCTTATTATGGTTGCCTCGCTTGCTCAG
TCGTCGATGTCATCAATCATCGAGACAAAATTCATCATCTTATGAGAACC
TTGTTCTGGAAAAAGAGAGACAGAACAAAATCACTGAAGCAAACTCGACA
GCAgatgttttcattgaaaatatcCATTCAATTGTGACAGTCTCCAgcat
gttaatcacttcagtgaaTTCCGTTACTAACGGTATGTCTTATTTACACC
AAGATTTATGTCGCCTTGACTACCTGGATGCtaacaaagaaaaacatttt
gagatTGTCAATGAACAcggagaaaatcttttaaaattgctgacatcagc
atatTCTTGGATCACCATTGCCAATAATGAGCTCGGCAACATATAGATAT
ATATTACTGACGTATGTTAAGATCCTGAACTAAGTTGTACCCGCCATCTT
CGAT Run BLAST on NCBI protein sequence of TCONS_00002524-protein >TCONS_00002524-protein ID=TCONS_00002524-protein|Name=TCONS_00002524-protein|organism=Clytia hemisphaerica|type=polypeptide|length=296bp
MESLQRSPEELLSETLQDLVKSYEGLKQNLNGYTQAVRYLKTNDFNNEDE
KHENYLVIFQADSKNTLRDFIGCFKELTSLIEIFQDFFGVYQVDFEYWCK
NEYQLQTVSEDFYSDGEKIVHNLETVYNRLRKLAEEAGKKNAETREQESR
LAEQNSNLKTRRNEGTKVSCRCVLLWLPRLLSRRCHQSSRQNSSSYENLV
LEKERQNKITEANSTADVFIENIHSIVTVSSMLITSVNSVTNGMSYLHQD
LCRLDYLDANKEKHFEIVNEHGENLLKLLTSAYSWITIANNELGNI Run BLAST on NCBI transcript from alignment at sc0000020:793064..794232- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002524 ID=TCONS_00002524|Name=TCONS_00002524|organism=Clytia hemisphaerica|type=transcript|length=1169bp|location=Sequence derived from alignment at sc0000020:793064..794232- (Clytia hemisphaerica)
CGAGGAGAGAAGCTTTTTTTAGAGATTTGACGATAAATAGTTTTTGAAAA
GAGGTATGAACTAAAATTGTTAAAAAAAAAGAAAAAAATATTTCAAGTTC
CTAGCATTTTTTTCATCTCAGAGTAGGATTGTGTGATCAAGAGAGAGGAG
AGCGAGAAGCCTACCGGTACCGGGTTCTAACTTACGTTGATAATTTACGT
TGTTTTTTTATCGTACAGATATGGAAAGTTTACAAAGATCTCCAGAAGAA
TTATTATCAGAGACATTACAAGATCTCGTAAAATCGTATGAAGGTTTAAA
GCAGAATCTAAACGGTTATACACAGGCTGTACGTTATTTGAAAACAAACG
ATTTTAACAATGAAGATGAAAAACACGAGAATTACTTGGTGATTTTTCAA
GCAGATTCTAAAAACACTTTAAGAGATTTCATTGGTTGTTTTAAAGAGTT
GACATCATTGATTGAAATATTTCAAGACTTCTTCGGTGTGTATCAAGTTG
ATTTTGAATATTGGTGTAAAAATGAATATCAACTACAAACTGTTTCAGAA
GATTTTTATAGTGATGGGGAAAAGATCGTTCACAACTTGGAAACTGTTTA
TAACCGATTAAGAAAATTAGCCGAAGAGGCTGGGAAAAAGAATGCAGAGA
CACGTGAACAGGAATCTCGCTTAGCTGAGCAAAATTCGAATCTGAAAACT
CGCCGCAATGAGGGAACAAAGGTTTCATGTAGGTGCGTCTTATTATGGTT
GCCTCGCTTGCTCAGTCGTCGATGTCATCAATCATCGAGACAAAATTCAT
CATCTTATGAGAACCTTGTTCTGGAAAAAGAGAGACAGAACAAAATCACT
GAAGCAAACTCGACAGCAGATGTTTTCATTGAAAATATCCATTCAATTGT
GACAGTCTCCAGCATGTTAATCACTTCAGTGAATTCCGTTACTAACGGTA
TGTCTTATTTACACCAAGATTTATGTCGCCTTGACTACCTGGATGCTAAC
AAAGAAAAACATTTTGAGATTGTCAATGAACACGGAGAAAATCTTTTAAA
ATTGCTGACATCAGCATATTCTTGGATCACCATTGCCAATAATGAGCTCG
GCAACATATAGATATATATTACTGACGTATGTTAAGATCCTGAACTAAGT
TGTACCCGCCATCTTCGAT Coding sequence (CDS) from alignment at sc0000020:793064..794232- >TCONS_00002524 ID=TCONS_00002524|Name=TCONS_00002524|organism=Clytia hemisphaerica|type=CDS|length=891bp|location=Sequence derived from alignment at sc0000020:793064..794232- (Clytia hemisphaerica)
ATGGAAAGTTTACAAAGATCTCCAGAAGAATTATTATCAGAGACATTACA
AGATCTCGTAAAATCGTATGAAGGTTTAAAGCAGAATCTAAACGGTTATA
CACAGGCTGTACGTTATTTGAAAACAAACGATTTTAACAATGAAGATGAA
AAACACGAGAATTACTTGGTGATTTTTCAAGCAGATTCTAAAAACACTTT
AAGAGATTTCATTGGTTGTTTTAAAGAGTTGACATCATTGATTGAAATAT
TTCAAGACTTCTTCGGTGTGTATCAAGTTGATTTTGAATATTGGTGTAAA
AATGAATATCAACTACAAACTGTTTCAGAAGATTTTTATAGTGATGGGGA
AAAGATCGTTCACAACTTGGAAACTGTTTATAACCGATTAAGAAAATTAG
CCGAAGAGGCTGGGAAAAAGAATGCAGAGACACGTGAACAGGAATCTCGC
TTAGCTGAGCAAAATTCGAATCTGAAAACTCGCCGCAATGAGGGAACAAA
GGTTTCATGTAGGTGCGTCTTATTATGGTTGCCTCGCTTGCTCAGTCGTC
GATGTCATCAATCATCGAGACAAAATTCATCATCTTATGAGAACCTTGTT
CTGGAAAAAGAGAGACAGAACAAAATCACTGAAGCAAACTCGACAGCAGA
TGTTTTCATTGAAAATATCCATTCAATTGTGACAGTCTCCAGCATGTTAA
TCACTTCAGTGAATTCCGTTACTAACGGTATGTCTTATTTACACCAAGAT
TTATGTCGCCTTGACTACCTGGATGCTAACAAAGAAAAACATTTTGAGAT
TGTCAATGAACACGGAGAAAATCTTTTAAAATTGCTGACATCAGCATATT
CTTGGATCACCATTGCCAATAATGAGCTCGGCAACATATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002524-exon-sc0000020-1575043694:794180..794232 | TCONS_00002524-exon-sc0000020-1575043694:794180..794232 | Clytia hemisphaerica | exon |
| TCONS_00002524-exon-sc0000020-1575043694:793064..794014 | TCONS_00002524-exon-sc0000020-1575043694:793064..794014 | Clytia hemisphaerica | exon |
| TCONS_00002524-exon-sc0000020-1510915933:794180..794232 | TCONS_00002524-exon-sc0000020-1510915933:794180..794232 | Clytia hemisphaerica | exon |
| TCONS_00002524-exon-sc0000020-1510915933:793064..794014 | TCONS_00002524-exon-sc0000020-1510915933:793064..794014 | Clytia hemisphaerica | exon |
| TCONS_00002524-exon-sc0000020-1491911889:794180..794232 | TCONS_00002524-exon-sc0000020-1491911889:794180..794232 | Clytia hemisphaerica | exon |
| TCONS_00002524-exon-sc0000020-1491911889:793064..794014 | TCONS_00002524-exon-sc0000020-1491911889:793064..794014 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020 | supercontig | sc0000020:793064..794232 - |
Blast
The following BLAST results are available for this feature:
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