TCONS_00001916-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00001916-protein
Unique NameTCONS_00001916-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00001916-protein ID=TCONS_00001916-protein|Name=TCONS_00001916-protein|organism=Clytia hemisphaerica|type=polypeptide|length=419bp
EIKYIMMLQLFIAIYLASGCFADILDCGNGSKLSRIGCFTKNDNAPTKFI
MRKPVYGDGSIKSLACDCAAKAKEGALVLTDYEECFETKAADHGSRYPGQ
TSYEKCINTVFHHCEKGQNCIGTTDSVYIYAKVVDGKWSTWSAVGACNRK
CGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSS
FGACNRRCGPGRRRATRNCNNPKPAFGGKSCIGPKIKFESCNNGACIPDL
RNQGQNCWKKPTYFCGKKGLCSRKGWGRWQDAAFPCVNRHCCTEPALVKN
LGSNCWSKCGRKGGYCPGFCGVNGRCCRRGWNDAGCAGMATPCNGKHCCT
TKRRDVQNSGKNCWWKCNKKDGECSTGFCGKDGVCCRRGWDTYRCIRTTG
ACRYKHCCVGTAAMGIQKP
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_000989XLOC_000989Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00001916TCONS_00001916Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000884TSP1_rpt
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000884Thrombospondin type-1 (TSP1) repeatSMARTSM00209TSP1_2coord: 195..247
e-value: 1.6E-7
score: 41.0
coord: 138..190
e-value: 1.6E-8
score: 44.3
IPR000884Thrombospondin type-1 (TSP1) repeatGENE3D2.20.100.10coord: 134..189
e-value: 7.6E-14
score: 51.3
coord: 191..246
e-value: 5.9E-14
score: 51.6
IPR000884Thrombospondin type-1 (TSP1) repeatPFAMPF00090TSP_1coord: 139..189
e-value: 6.5E-6
score: 26.2
coord: 196..246
e-value: 2.7E-5
score: 24.2
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 192..247
score: 11.768
IPR000884Thrombospondin type-1 (TSP1) repeatPROSITEPS50092TSP1coord: 135..190
score: 11.701
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 189..246
IPR000884Thrombospondin type-1 (TSP1) repeatSUPERFAMILY82895TSP-1 type 1 repeatcoord: 133..189

Blast
[Close]
BLAST of TCONS_00001916-protein vs. Swiss-Prot (Human)
Match: HMCN1 (Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.460e-33
Identity = 56/143 (39.16%), Postives = 84/143 (58.74%), Query Frame = 0 
Query:  134 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGACNRRCGPGRRRATRNCNNPKPAFGGKSCIGPKIKFESCNNGACIPDLRNQGQNCWKKPTYFCG-----KKGLC 271
            + GKW+TW++  AC+  CG G R+ TR C++P P +GG+ CEG  ++ + CN+  CP +G WS WS +G C+R C  G+ R  R C+NP P+ GG++C GP  + + CN   C  D      + W + +  CG     +K LC
Sbjct: 4699 IHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPCPTHGNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLC 4841

HSP 2 Score: 133.265 bits (334), Expect = 2.062e-33
Identity = 64/168 (38.10%), Postives = 91/168 (54.17%), Query Frame = 0 
Query:   82 YEECFETKAADHGSRYPGQTSYEKCINTVFHHCEKGQNCIGTTDSVY---IYAKVVDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGACNRRCGPGRRRATRNCNNPKPAFGGKSCIGPKIKFESCNNGAC 246
            +EEC  T++   G+    QT    C N    H   G+ C G    +    I    V G WS W   G C+  CG G +   R CNNP PAFGG  C+G + + + CN   CP++GKW+TW+S+ AC+  CG G R+ TR C++P P +GG+ C G  ++ + CN+  C
Sbjct: 4595 WEEC--TRSCGRGN----QTRTRTCNNPSVQH--GGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCGGGARQRTRGCSDPVPQYGGRKCEGSDVQSDFCNSDPC 4754

HSP 3 Score: 123.25 bits (308), Expect = 4.775e-30
Identity = 55/133 (41.35%), Postives = 68/133 (51.13%), Query Frame = 0 
Query:  134 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGACNRRCGPGRRRATRNCNNPKPAFGGKSCIGPKIKFESCNNGACIPDLRNQGQNCWKKPTYFCG 266
            VDG WS WS    C R CG G +  TR CNNP    GG+ CEG  ++   CN   CPV+G WS W  +G C+  CG G +   R CNNP PAFGG  C G + + + CN   C    +      W   +  CG
Sbjct: 4585 VDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGKGTQTRARLCNNPPPAFGGSYCDGAETQMQVCNERNCPIHGKWATWASWSACSVSCG 4717

HSP 4 Score: 115.931 bits (289), Expect = 1.437e-27
Identity = 46/111 (41.44%), Postives = 63/111 (56.76%), Query Frame = 0 
Query:  136 GKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGACNRRCGPGRRRATRNCNNPKPAFGGKSCIGPKIKFESCNNGAC 246
            G WS WS  G C+R C  G+ R  R C+NP P+ GG++C GP  + + CN   CPV+G W +W S+  C+  CG G +   R C++P P  GG+ C G   +   CN  AC
Sbjct: 4758 GNWSPWSGWGTCSRTCNGGQMRRYRTCDNPPPSNGGRACGGPDSQIQRCNTDMCPVDGSWGSWHSWSQCSASCGGGEKTRKRLCDHPVPVKGGRPCPGDTTQVTRCNVQAC 4868

HSP 5 Score: 114.39 bits (285), Expect = 3.820e-27
Identity = 54/134 (40.30%), Postives = 70/134 (52.24%), Query Frame = 0 
Query:  134 VDGKWSTWSAVGACNRKCGPGRRRFTRKCNNPKPAFGGKSCEGPKIKFESCNNGACPVNGKWSTWSSFGACNRRCGPGRRRATRNCNNPKPAFGGKSCIGPKIKFESCNNGACIPDLRNQGQNCWKKPTYFCGK 267
            V G +S WSA  AC+  CG G ++ +R CN P PA GGK C+G  ++  +C N  CPV+G WS WS +  C R CG G +  TR CNNP    GG+ C G  ++   CN   C           W   +  CGK
Sbjct: 4528 VHGGFSQWSAWRACSVTCGKGIQKRSRLCNQPLPANGGKPCQGSDLEMRNCQNKPCPVDGSWSEWSLWEECTRSCGRGNQTRTRTCNNPSVQHGGRPCEGNAVEIIMCNIRPCPVHGAWSAWQPWGTCSESCGK 4661
The following BLAST results are available for this feature:
BLAST of TCONS_00001916-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HMCN11.460e-3339.16Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2[more]
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