TCONS_00002139-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002139-protein
Unique Name	TCONS_00002139-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	321

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002139-protein ID=TCONS_00002139-protein|Name=TCONS_00002139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MMFKRKRKNIIIFVVGCFCGIYLENILKKYMDRRFYSNQEDTNNTWHLVP
EKHNIKNGALYFTGKNLYHKNSEASNYFHSIPILCWVLTTKDTLHTKAQA
VKDTWGQRCQVLLFFSSEDDPSFPAISLDVKEGYMNLHEKVKAAWRYIFK
HHSKDASWFIKADDDTFLIMENLRHFLSSYSSSDKLFFGHNLWHHSTDYN
SGGAGYIFSRQTLIEYFSISKTCESKSNAEDVAVAACLKKVGITPSDTRD
DDGRETFHPFAPDFHLIPGSIGKDNWLYQRSRWELVEGVGCCSKYSIAFH
YTTTKRMYLLNYYLYVLKKGF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001115	XLOC_001115	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002139	TCONS_00002139	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003378	Fringe-like

Vocabulary: **Cellular Component**
Term	Definition
GO:0016020	membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0016757	transferase activity, transferring glycosyl groups

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003378	Fringe-like	PFAM	PF02434	Fringe	coord: 85..242 e-value: 8.0E-11 score: 41.8

Blast

[Close]

BLAST of TCONS_00002139-protein vs. Swiss-Prot (Human)
Match: C1GLT (Glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 OS=Homo sapiens GN=C1GALT1 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 5.785e-69
Identity = 116/320 (36.25%), Postives = 176/320 (55.00%), Query Frame = 0

Query:    9 NIIIFVVGCFCGIYL-ENILKKYMDRRFYSNQEDTNNTWHLVPEKHNIKN---GALYFTGKNLYHKNSE---ASNYFHSIPILCWVLTTKDTLHTKAQAVKDTWGQRCQVLLFFSSEDDPSFPAISLDVKEGYMNLHEKVKAAWRYIFKHHSKDASWFIKADDDTFLIMENLRHFLSSYSSSDKLFFGHNLWHH-STDYNSGGAGYIFSRQTLIEYFSISKT--CESKSNAEDVAVAACLKKVGITPSDTRDDDGRETFHPFAPDFHLIPGSIGKDNWLYQRSRWELVEGVGCCSKYSIAFHYTTTKRMYLLNYYLYVLK 318
            N + F+ G   G  L   +    +  +  +     +N  H      N +N   G + F   +  HK+     A N +  + ILCWV+T    L  KA+ VK TW QRC  +LF SSE++  FPA+ L  KEG   L+ K   A++Y+ +H+ +DA WF+KADDDT++I++NLR  LS Y   + ++FG     +    Y SGGAGY+ S++ L  +    KT  C   S+ ED+A+  C++ + +   D+RD  G+ETFHPF P+ HLI G + +  W +  + +  VEG GCCS  +++FHY  +  MY L Y +Y L+
Sbjct:    8 NFLTFLCGSAIGFLLCSQLFSILLGEKVDTQPNVLHNDPHARHSDDNGQNHLEGQMNFNADSSQHKDENTDIAENLYQKVRILCWVMTGPQNLEKKAKHVKATWAQRCNKVLFMSSEENKDFPAVGLKTKEGRDQLYWKTIKAFQYVHEHYLEDADWFLKADDDTYVILDNLRWLLSKYDPEEPIYFGRRFKPYVKQGYMSGGAGYVLSKEALKRFVDAFKTDKCTHSSSIEDLALGRCMEIMNVEAGDSRDTIGKETFHPFVPEHHLIKGYLPRTFWYWNYNYYPPVEGPGCCSDLAVSFHYVDSTTMYELEYLVYHLR 327

The following BLAST results are available for this feature:

BLAST of TCONS_00002139-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002139-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
C1GLT	5.785e-69	36.25	Glycoprotein-N-acetylgalactosamine 3-beta-galactos...	[more]

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TCONS_00002139-protein (polypeptide) - C. hemisphaerica