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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002479 ID=TCONS_00002479|Name=TCONS_00002479|organism=Clytia hemisphaerica|type=transcript|length=325bp AAGGAAAAATCTggatcaaaaataaagaaaaagaccACGGCCTTCAGGTC ACTTCACTGAACCACAAATATTTTCGGACAGACCTTGAAGATGCGTTATC TCTCGGACGACCTTTACTCATTGAAGATGTTGGCGAAGAACTTGATCCAG TTCTCGATATCTTGGAAaagaattttattaaattggGAAGTAGTTTCAAG GTGAAACTTGGTGACAAAGAAGTAGACGTGATGAATGGCTTCACAATGTA CATCACAACCAAATTGCCCAACCCTTCTTACACTCCAGAGagaatcaaga GAATCATTTGAATGTACTTGCTGAC Run BLAST on NCBI transcript from alignment at sc0000020:908102..916324+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002479 ID=TCONS_00002479|Name=TCONS_00002479|organism=Clytia hemisphaerica|type=transcript|length=8223bp|location=Sequence derived from alignment at sc0000020:908102..916324+ (Clytia hemisphaerica) AAGGAAAAATCTggatcaaaaataaagaaaaagaccACGGCCTTCAGGTA
AGGAAGAATGGGTTTCTTGGTGAAATCTTGGAAtcctttttgaatgtttt
taaattgaaaggTCAAACTCataagatttataaagcccgaagggctagat
gtcgtgctttggctgaaaagtatgccgaggttaggtaggaaatcctttcT
AGGCCACGTGAgattacaataaaatttcagcgcttgaacaataagaagct
tcgcaggttttcgaaagcaataggagcaatattttttgcgatattcactt
ctctctctaattcgatcttcaagggaagaatcattttattcgaattagag
aaaaattcgaattacagaaagattcgaattgcagAGAGTAATTTTTACCA
CTTTCTAGCTGAGGGCACCAAtaatttagttcgaattacagaaagattcg
agtaatagagattcgaataagagagagcTGACTGTAAATCAGGTCCAAAC
TAGCCTTTGTTTGGAAAATTAACTTGAATCATTCTCTTATATAGGTCACT
TCACTGAACCACAAATATTTTCGGACAGACCTTGAAGATGCGTTATCTCT
CGGACGACCTTTACTCATTGAAGATGTTGGCGAAGAACTTGATCCAGTTC
TCGATATCTTGGAAaagaattttattaaattggGAAGTAGTTTCAAGGTA
AGAcaggcattttttcaaaacaaaagaaaatttactaatTGAGCCAAATC
TGTTTAATAACGTTGAAACAAAACTGTTTTAGGTAATCTAGAagggttaa
aataaaaaaaaactttacccGCCGGCGTAAACCATGGTGGCGCTTCCTTA
GTCCGCATACCATGGTCTtatcactttcaaagtggagcTGCGACCCCTGT
AAGAAAGGATAAATTCTAACAATTTGGGGATGCTCTGAAATAGGTcatga
aaaagaacaaatcaCCAACAAGAGACATAACTCAGTTAACTGGGAAAtca
tatatttttaaaatatgtttaatgttgaaacaaatataaatattttgagA
CTACGCAATCGTTTTCACCATTGAACCATTGCTTTTGTTTCCGTCTTTTG
TTAAAAGTTAGAGCTCCCGtacataaaaaatatttgttttgcatattttt
tgaTCATCCCAAGAATCGAAAATGGTAACGTGAAGAAAATTgacaataaa
ttaaaaaaatacatcACCAGACCGGTGTTTTCTATTATGACTATGATTAA
ACACTAGGGCCAAAACATTATCAAACAACGTGCAAATAAAAACGTTGATG
ATCTTCGTCGTTGGATCAAGGCTGAAAATTCCCTAAAGTTGGAAGGCAGG
GTCTTTAATCGTAGTCAAACCAGGCCAAataaacgtaaatctcgtgatcc
aagccaccaTAAACTTCCAAatgaatatcactgggtcgataaacTCAAAC
GTATTTAGATTAatcttgaatttttgttttctttactgCAGGTGAAACTT
GGTGACAAAGAAGTAGACGTGATGAATGGCTTCACAATGTACATCACAAC
CAAATTGCCCAACCCTTCTTACACTCCAGAGGTTTGTCTAATTTCTAAGA
TGTATAGatatgatatgagccctccgaatgcattcgggataGGCCCTACC
CATGAAGAATTAGAAATCACGGCGCTGGCAGTCGGACAGAGTCAAGGGTG
ATAACCAATACACCTTTCAAATTTTCCATAGTAAATAAAAAGCTCCATGC
GTTGAAAGGTTCTACCTACATTGATCCCAGCCGGCactcaacgttgtttc
aacgttcatctaacgctaACGttaatggacgttgtgaacattagatgaac
gttaaaacaacattgtgtgtcagctgggataaTATTCGTAAACGTTAACC
TCGATTGGCCAATCGGAGAATATCGGTTCAACCTATTGCCGCTATCAAAT
AGTTCATGAGTCACGGGGGTTTTAGGTCCTTGCGTAAAGCTAGTATGACG
TGAAGTATAATATTATAATTGGTGGCCCAACGACTGATGGCCCGTTGCGA
ATGATTGTCCTTCTACTTGACCAATGAACAGTCACTACAAACTAGGCTAC
TATATCTTCATTCGTTCTGAGCGTAAAACTGTTACTCTTCTCACTCTTTG
AGAGTAACTTTTTGCCtgctctaacaattagaatatgcagggcagaaagt
tggtcgtctaaactagagctaaggcctaaaagcctggagttGCTTATTGT
GTATactccatcatcatcatcatcatcatcatcatcagcaGCAGGTGGAT
CTCTGTTCGATTTTGAAACGCGCAGCGATGAAATGTTATCGGCTACAGTT
TTTGaacgatttttcaaaatgaagcggGGATTCGTTTTTTGAATTCCTTG
AACTCTAAATTTTCGAAATgacaccaaaaaaaattttcccgcgaccttta
gttttttttccaggtgatttttcaacaaattgTTTCAAAAGCGAACATAA
GTGGAATCTTTTTTGTGAgtagatatttgcaaatttttttcagcTGGTAG
CCTCAACAGGGTCCTTATCTTCAAATTTGAgcagagaaaaagtcaattca
cTTCGTCATGTTTTGGGAATTTCACAAAATCACggtcaatttttttgcct
ggaaGATGCCCTACGTTATATGCGAAACGCTTCTAGACCCAAATTTCAAA
CCTATgagaaagacaaaaaaataaatttttctttttgatccaATTCAATT
TTCAGGACCCAAATATAACCACTTTGATAAATATGTGGTGTTTtgtgcga
aaaaaaaatttttttagccaatttttcaagttgaaattCTGGTATGTTCG
TTATTGAAACCTCGTTTTTGCAATTTGATTGCAATCCATGAGAAATAATT
GTCAATGTTGTCCCAAATGACACTATCTGCTATTTATAATcgtaaaattg
ataattttatcGAAATAGGTAATCTTTGGTACCTTGGGGGGTGTTATTTT
AATCCTATGGAGCACCCAATTTTATCATCGTGATCAGAAGGTTTCAAAAA
CGAACAGGGTGGTTTTAAGATAGCCACTACCCTAGATGCTAATTTTTGCT
TGATGTATCGTTTTCCGTGACTCAAATTTGACTAGTGCTTGAATATTATT
GAAAGggtgaatatattttttcatttttcaaaaatcttgattttcgGGGC
CTGGGACGAGTTTTTACGCCCAAACGAGGCTAAATCTTTGggacagcctg
gagacttcaaaaatggtcagatttggctgaaatttggctcacttgttcct
tgggaaaTTATCTggagttaatttttttcatttttcaaaaattttgattt
ttggggcctggggacgagtttttcaccaaaacgaggctacaactttgggg
cagcctggagacttcaaaaatggtcggatttggctgaaatttggcacact
ttttccttgggtgaatatctggagagtgttttccatttttttcttaattt
tgtcatttttttcttaattttgatttttgaggcctGAGGACAAGTTTtac
gccaaaacgaggctaaaactttggggaaTCCTTGAGACTTCAAAAGATGG
TCGGATTGGGTTGAAATTCGACACACTTGTTTCTTGGGTAAAATATGTGG
ATGtgtcttttattttttgaaaattttgattcttggggcctggggacgag
tttttcgcccaAACGGggctaaaactttggagcagcctggagacttcaga
AATGGTCGGAtttaacttaaatttggcacatTTTTTCTTTGGGTAAATGT
CTGTTCggtgtttattttcattttttgaaagtttagatttttgggtcctg
gggacgagttttacGCCAAAACGAGGTAAAAACTTTGGGGGAGCCTAAGG
AGTTCAAAAATTCGCTTAGATACAAATTtgaatcagagaaaatttttgcg
CTTGAAAGTCCGTTTAGCCTGTTATTTTTAAAGGAATTCCTCCACCCTAT
TATTTGAGCATTTACAATCGGGCCTTTTGAGTcagttcccagctggcaca
caacgttatttcaacgtttatctaacgttcacaacgtccatataatgtta
gatgaacgttgagacaacattatgtgccagctgggttgggaaaatactga
agttgagcccagtgcgttacGCACGTTCAATTATTTCACAGACCGGAACA
TTAGCCTCCAAATGAGGATTAAGAGTGATAAGACTGAGGAAAATTCTTTG
AAGTTCAGTCCACATATTGATAAATTCTATTGACAAGTATCCGAAAATAC
AGTCACGTGAGCTTAGTACTTTACAAATCGGTCTGCAAAATACACGTTCA
ACCTCTCTGaaattgaaactaaaataaaaattttcagcatTTAGAGAAAT
TGACAatatgacacccctgtctcagtgacccggtgagaaCTTTTTATTAC
CCAGTGGGGATAGATTGAAGGAGCCAAATGCCAATAgggatgaaaaattt
taaattttattgtttacagCTCCAAAATCCAGTGAGAATTCCCATAATTA
ATGCTTTTCCCAGTGGGGATGAGATTTCAGTGTAgtttttcaatggggat
gaaatttcagggtatttttctcACCGAGGACAAATTTTCGgccgattttt
ccagtggggagggggtcccactgggtctgtgacacgggagTGTAATAGGA
GAAGGGTGCAAACTTTCAGTTCGGTACTCTGCGCTTTTGTTATTgctaaa
aaatgcaaaaaattacCATGAGCCGCAGCGAAAATGAACAACCCGATAAC
TAGAAGAGTACCATAATGAACTTTCCTTGCAGAGGGCCGTTAGCTAATTA
TTTTTGCCTTTATCTTTACGAACTTTAACGTGCTAAAGCCTGGGCTTCAA
CTTCAGTGTACGTGTGAAGGTGGAAGgccaaattttaaacaaaaaccaTA
ATAAGATCAAGTAAAACTGTAATCTTTTAGGGGGTCTGACTATTGGTTTT
TAGCAATATTCCACTAGATTTTGAGATATTTCTAGTTTAagatctttcaa
aaataaaaaaaatcagaatatgcttacgtcagcaaaaaaactaGCCCttt
agatattttgaaatttgatctAGTGGCCAAAACTTGACTAACAATACCAG
TACTCTTTTAATATAAATTATGGTCTAAAGTCGAAAAGATTGACAATTTT
ATTAGGTATAACATGAAATGCTCGAGAATAAacttaaaaagaagaaaaat
tgaagcttcTCCAAAGAGATATGAGTGCAGCTTAgggaatttgaaagaaa
atcttaagaataTGTATCGGCCCAACTTCTGGGGGTGAGTTAAATAAAGT
ATTCATAGCAATGATTTTCAAGATAATCggtattttcaaaatgacgatAA
GATATAAATGAATATGAAATGATGTTAGAAAAATCTTACATGATTAAAAG
TCTGAGTAAAAATATGATCCGATTACTTTAAAAAAACTAGGAAGAACTAG
TGTGAGTCTGAATGGATAgcaccttaagtggataaattttggcgtggact
taatttggcgattggccgaaaaacaatttttggcggggatttaatttggc
gaatcggaaattttgtcacatttaaatgggtgaaaattactcaaagtATA
Cagtactaaaaagttgtgatttttcacataattcttttttttgttaaatt
tggccgggatttaatttggcgaattgccgaatttggaaattttggcgcca
aaatttatccacttaaggtagatAACATCTCACCATAAAGAAATCGAAAT
GGAATGAAAGTCTAGCCACTTTTTCTGAGCTCAAGTCTTGGAATTTCTTC
TAGTtgtgttattgaaaaacaaattaataTGTTGGAAGCTGGAAGGAATT
ACcaaaattttttgcaaatttaaacAAAGTTgacataaaatatatatttt
tataaattacgtcacaaacatcacttgcctcgtattgaCTTGGTTCTTTA
AATTTGCTTTCTattcatgaaaaaatcatttgatGTCTCAATAGACATAA
TCACCACGGCCATTGCTTGAAAacaggcaagtgatgttcgtgacgtaatt
tatggaaTGATAGCGGGTTTCTGTCAAAGAAATTGAATAAATTCGTATTA
ATTaataaaaaatggcaaaattaagacgaaaattcaaaattaactAACAA
ATAGACTGAAAATGCAGACACGCCATAAAAAGATGGTTACTGATATAGGT
TGCTTTCTGTAAAACacttaaatttgaataaattaacatgaaatgaaaaa
gaattaatACAAAAATCTATTTGCAACTTATAGAAATAATGAACCACCTT
GAAAATTAAGAAACAAAgagcaattttattttttccaattaATAAAGAAG
GTCCGTGAGAATCGAATTTTATTAGActtgaatttgaacttccaaTTGGA
TTCGGTCCACGttttttaaaaactgaaaaaatttccgaaatttttggcaa
atatttaaaaataaaattgaagttcgaaTAAATTAACATTAAATGACAAA
ATTaggacaaaaatttcaaaataattaacAAACACTGAATATGCTGAAGC
ACCATAAAGAGATAGTAGCTAATACTCTTTAGTTGACATAAAATTGAGAT
GATTTCTGTAAAACacttaaatttgaataaattaacattaaatgacaaaa
ttaggacaaaaatttcaaaataattaacAAACACTGAATATGCTGAAGCA
CAATAAAGAGATAGTAGCTAatacTCTTTAGTTGACATAAAATTGAGATG
ATTTCTGTAAAACacttaaatttgaataaattaacGTAAATGAAAGAAGT
TAGgacaaaattctttaaaaagaaataatGAATCACCTTAAAAATCGAGA
AACAAAGAGTAAAAGCGCACTTCAAAAGTGCAATTCAAATTAAAAGCTGT
ATTATAAAACTGAGCTAACATTGGAGATGTTAATTTGAAAGCTCCGTGAG
TATCAAAATTATGCTTGAAATTTGAgctgtatttttataaatttgggtTA
GCCCAAATTTCCTTGCAAATCTCAACAAAGTTAACATAGAATTTGAGATG
ATACTTGTAAACTGAAATTCGAATAAATtacataaaattaaaaaattagg
ACACAAATTCAAAGATAATTAACAATATACTGACAGTGCTGAAACACCAT
AAATgtgagaagaaaaaaatgatgacaaaTATAGCTTATTgactgtacac
gtttttttataagcataacgcttataagcatatccaggcccaaatcttgt
aaaaacttaAGCATTGGCTTATAGCATATGCTGAGGCTCAGTTTACAGtt
attgaatttttactaaaataccGTGTAATATTGGGGGTCAAAAAAAACTA
ACAGGATAAAAGACGTACGTCATTACATAAGCATAGCATAAGCAtatttg
aggctcaaaaataGAATTTCGCTAAGCATAATGAAGCTGAGAAAAAATAC
CCCTATGCGTATAAAAAAAAACGAGCAACTTGTTAAAGCTTTGAAATAAT
AGTCCTAGTAGAAAGTAGACTTCATCGAAATAAATTGGAAATAAATTAAT
GGAAtcattaaaaagataaattgTACAAAAAGGTAAAACCAAAATTAGCA
CCAccaaaaattataaatatttgGTGAAACTCACGAAAGTTTCTTTTGGG
TTATAATgactaccttattggtatatattttcgcgtgttacaaatttcaA
TCGcgaattttttcggaaaaacgtttttcgcgtgtattaaatttcgcgat
tgccgacttctggTAAATTTTCTCgcgtattaaatttcgcgattcactaa
attaggtattttgaaaaagtgGGAATATAGTGTCTTtagtcatttttgaa
aattttgcatttttcagcctatttaaaaaattttttcgcgtgtatttaat
ttcgcgattttgtaattttgaaaaattcaaacagtaaaaatttcgcgaaa
attgacctAAAAACTCGctaaattaagtacccgcgaaaattcgtAACACG
CAAAAATATATACTAAAAAGGTACTAAAAATAAAGTGTGTTCACATATGA
TTGGCAATGGAAGCAAAAAAAGCCTgtaagaatgcctgtaacttttgata
gtcaaatacaattgtgaatattttttgttttgttttagagaatcaagaGA
ATCATTTGAATGTACTTGCTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00002479-exon-sc0000020-1491911889:908102..908148 | TCONS_00002479-exon-sc0000020-1491911889:908102..908148 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1510915933:908102..908148 | TCONS_00002479-exon-sc0000020-1510915933:908102..908148 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1575043694:908102..908148 | TCONS_00002479-exon-sc0000020-1575043694:908102..908148 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1491911889:908646..908798 | TCONS_00002479-exon-sc0000020-1491911889:908646..908798 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1510915933:908646..908798 | TCONS_00002479-exon-sc0000020-1510915933:908646..908798 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1575043694:908646..908798 | TCONS_00002479-exon-sc0000020-1575043694:908646..908798 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1491911889:909593..909682 | TCONS_00002479-exon-sc0000020-1491911889:909593..909682 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1510915933:909593..909682 | TCONS_00002479-exon-sc0000020-1510915933:909593..909682 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1575043694:909593..909682 | TCONS_00002479-exon-sc0000020-1575043694:909593..909682 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1491911889:916290..916324 | TCONS_00002479-exon-sc0000020-1491911889:916290..916324 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1510915933:916290..916324 | TCONS_00002479-exon-sc0000020-1510915933:916290..916324 | Clytia hemisphaerica | exon |
TCONS_00002479-exon-sc0000020-1575043694:916290..916324 | TCONS_00002479-exon-sc0000020-1575043694:916290..916324 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000020 | supercontig | sc0000020:908102..916324 + |
Blast
BLAST of TCONS_00002479 vs. Swiss-Prot (Human)
Match: DYH5 (Dynein heavy chain 5, axonemal OS=Homo sapiens GN=DNAH5 PE=1 SV=3) HSP 1 Score: 162.925 bits (411), Expect = 1.403e-46 Identity = 77/97 (79.38%), Postives = 88/97 (90.72%), Query Frame = 3
Query: 3 GKIWIKNKEKDHGLQVTSLNHKYFRTDLEDALSLGRPLLIEDVGEELDPVLD-ILEKNFIKLGSSFKVKLGDKEVDVMNGFTMYITTKLPNPSYTPE 290
GKIWIKNKE + LQ+TSLNHKYFR LED+LSLGRPLLIEDVGEELDP LD +LE+NFIK GS+FKVK+GDKEVDV++GF +YITTKLPNP+YTPE
Sbjct: 3610 GKIWIKNKESRNELQITSLNHKYFRNHLEDSLSLGRPLLIEDVGEELDPALDNVLERNFIKTGSTFKVKVGDKEVDVLDGFRLYITTKLPNPAYTPE 3706
The following BLAST results are available for this feature:
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