TCONS_00002265-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00002265-protein
Unique NameTCONS_00002265-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length615

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00002265-protein ID=TCONS_00002265-protein|Name=TCONS_00002265-protein|organism=Clytia hemisphaerica|type=polypeptide|length=615bp
MAYVLVFFLPFLIGLSNADDFFQIAPTDVNIYYDTPKKFERYCIPPGQSD
FVITWWRDDKRLGSQDKPNANINIPSRIKIRETSDLQSTKWHSVTPGSKI
SLLQINSVLPTDQGEYSCVATNKSGHFSAKFDVKVTDACRGGSFKCAIDK
KCILNYTLCDGIAQCSNDLDESTMAGCSLPSPPKHLIVKASEPNEIMLTW
QPVSKATHYEIEITYPDGSKKIISKSSRFNIAVIDGLKSKTEYGAKIRTR
SLTGVSNFTDQITVSTNSLETPAAPLVDNANIIRTVTDISLSWKPVPNAV
TYEITFRSPDGSVKKIFRSSSERTIHFSGLQEDTLYVIRIRARSSSGIAG
RFAKMKVKTLKNAPPSAPENIRHIVNARQSRVEFSWNFPTDMGTSFKPDL
NYQFEYCIFQSYKVIFKEYRNVSVVVPDDQNNTPDMKTKSGRQNDNNIPD
GKNNVGRKKTRKIVLKLVDVVKTRYRPIDCKQMTVSQKLLSLKLKPGFYF
YNLTTLGINNIEGGTRTGNFTIDMYTPTTEPEAGVGPTAIPMPGAFSGII
IFAIVTAGLCVILLVSFFMAWLCKWKLLTDAVDAYKLDVIENNRINNLEA
HQRHNNNDMYKKLNS
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001199XLOC_001199Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00002265TCONS_00002265Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR002172LDrepeatLR_classA_rpt
IPR013098Ig_I-set
IPR013783Ig-like_fold
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 272..349
e-value: 1.5E-4
score: 31.1
coord: 180..256
e-value: 4.8E-7
score: 39.4
coord: 365..515
e-value: 74.0
score: 3.9
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 285..347
e-value: 8.9E-8
score: 32.3
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 271..366
score: 14.493
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 182..269
score: 14.209
IPR003961Fibronectin type IIICDDcd00063FN3coord: 180..266
e-value: 4.44839E-10
score: 55.9655
IPR003961Fibronectin type IIICDDcd00063FN3coord: 285..347
e-value: 2.45936E-6
score: 44.7947
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 179..364
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSMARTSM00192LDLa_2coord: 138..179
e-value: 4.3E-5
score: 32.9
IPR002172Low-density lipoprotein (LDL) receptor class A repeatPROSITEPS50068LDLRA_2coord: 138..178
score: 9.637
IPR002172Low-density lipoprotein (LDL) receptor class A repeatSUPERFAMILY57424LDL receptor-like modulecoord: 138..173
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 22..135
e-value: 8.9E-8
score: 32.0
NoneNo IPR availableGENE3D4.10.1220.10coord: 163..189
e-value: 6.4E-4
score: 19.1
NoneNo IPR availableGENE3D4.10.400.10coord: 139..162
e-value: 1.2E-5
score: 25.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 428..455
NoneNo IPR availableCDDcd00096Igcoord: 43..131
e-value: 3.86465E-7
score: 47.0987
NoneNo IPR availableCDDcd00112LDLacoord: 139..171
e-value: 6.2692E-4
score: 36.801
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 22..138
e-value: 1.7E-11
score: 43.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 190..275
e-value: 2.3E-13
score: 49.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 276..516
e-value: 9.9E-20
score: 70.6
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 43..136
score: 8.284
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 43..137

Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002265-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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