TCONS_00002560-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00002560-protein
Unique Name	TCONS_00002560-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	373

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00002560-protein ID=TCONS_00002560-protein|Name=TCONS_00002560-protein|organism=Clytia hemisphaerica|type=polypeptide|length=373bp
MGTIEDELRIVLIGKTGSGKSSTGNTLLGREVFKESCSFTSETRESLFDK
TIRDGRTILVVDTPGLLDTRGDADLKQTANEILKCIRITSPGIHAMILVI
GEGRFTHENAFVFEVLMKLFGENLKDYLLVVFTHDDQRKRKKKSLDDLVM
NAPPMLQKIINQYSQGYIGIDNTKDLATNKDATHILRKVKEIVKANHGRF
YTSESYQIAEEFFRVDAKRLAMTGELDAQFEAAFPETPSMPLPRLYEDYD
SYPENNSHQDLCFQGPSGRQGPFDFVDIPGSSGIHKSQTLPSNMYSGIQN
QSGRTPSPAREIHQSQNQSNIHNRCSSYPGNSALEDSHEHEDDKFKSFCS
SMVEGQAKAIAKFERSIKIDDQQ

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_001379	XLOC_001379	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00002560	TCONS_00002560	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR006703	G_AIG1
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005525	GTP binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006703	AIG1-type guanine nucleotide-binding (G) domain	PFAM	PF04548	AIG1	coord: 8..211 e-value: 1.7E-50 score: 171.2
IPR006703	AIG1-type guanine nucleotide-binding (G) domain	PROSITE	PS51720	G_AIG1	coord: 5..210 score: 29.412
None	No IPR available	GENE3D	3.40.50.300		coord: 2..369 e-value: 8.5E-24 score: 83.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 295..343
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 6..213

Blast

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BLAST of TCONS_00002560-protein vs. Swiss-Prot (Human)
Match: GIMA4 (GTPase IMAP family member 4 OS=Homo sapiens GN=GIMAP4 PE=1 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 6.854e-36
Identity = 77/212 (36.32%), Postives = 127/212 (59.91%), Query Frame = 0

Query:    7 ELRIVLIGKTGSGKSSTGNTLLGREVF-----KESCSFTSETRESLFDKTIRDGRTILVVDTPGLLDTRGDADLKQTANEILKCIRITSPGIHAMILVIGEGRFTHENAFVFEVLMKLFGENLKDYLLVVFTHDDQRKRKKKSLDDLVMNAPPMLQKIINQYSQGYIGIDNTKDLATNKDA--THILRKVKEIVKANHGRFYTSESYQIAEE 211
            +LRIVL+GKTG+GKS+TGN++LGR+VF      +S +   E R S + +T      ++VVDTPG+ DT  +    +T+ EI++CI +TSPG HA++LV+  GR+T E     E ++K+FGE  + +++++FT  D       +L D +  AP  +Q +++ +   Y  ++N K     ++A    +L  ++ +V+ N    YT+  YQ AEE
Sbjct:   30 QLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKET-----ELVVVDTPGIFDT--EVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRKDD--LGDTNLHDYLREAPEDIQDLMDIFGDRYCALNN-KATGAEQEAQRAQLLGLIQRVVRENKEGCYTNRMYQRAEE 231

The following BLAST results are available for this feature:

BLAST of TCONS_00002560-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00002560-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GIMA4	6.854e-36	36.32	GTPase IMAP family member 4 OS=Homo sapiens GN=GIM...	[more]

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TCONS_00002560-protein (polypeptide) - C. hemisphaerica