TCONS_00002480 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002480
Unique NameTCONS_00002480
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length374

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002480 ID=TCONS_00002480|Name=TCONS_00002480|organism=Clytia hemisphaerica|type=transcript|length=374bp
TTCTTACCAAAAACCTTGATATTGCACCTTCTCCCTTTGTCATTGTGGTT
TCACCTCTGGTGGCATTGATTAAGGACCAAATTCATGAAGCCAATAATTC
ACCACTCAACTTAAAGGCTTGTACGATTCAGGAAGAAAACATTAAGAGCT
GTAACATGATATTTGGTACTCCAGAAAACTGGCTTCAAAACAGCACAGCC
CAAAAATTTCTGAAGTCAACATTTGCtaggaaaaatttgttttgcttgGT
TGTCGACGAGGTTCATAAAGTTACCTGggGAGCAGCCGTTAGTGCCACTG
TCAATGCTGACCTAACGGAACTCGTCCTAGCGTGGAACTTTCGAAACATC
TGAAAATTGTTTCTGCTTGCAGTG
Run BLAST on NCBI

protein sequence of TCONS_00002480-protein

>TCONS_00002480-protein ID=TCONS_00002480-protein|Name=TCONS_00002480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=116bp
LTKNLDIAPSPFVIVVSPLVALIKDQIHEANNSPLNLKACTIQEENIKSC
NMIFGTPENWLQNSTAQKFLKSTFARKNLFCLVVDEVHKVTWGAAVSATV
NADLTELVLAWNFRNI
Run BLAST on NCBI

transcript from alignment at sc0000020:950666..951364+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002480 ID=TCONS_00002480|Name=TCONS_00002480|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at sc0000020:950666..951364+ (Clytia hemisphaerica)
TTCTTACCAAAAACCTTGATATTGCACCTTCTCCCTTTGTCATTGTGGTT
TCACCTCTGGTGGCATTGATTAAGGACCAAATTCATGAAGCCAATAATTC
ACCACTCAACTTAAAGGCTTGTACGATTCAGGAAGAAAACATTAAGAGCT
GTAACATGATATTTGGTACTCCAGAAAACTGGCTTCAAAACAGCACAGCC
CAAAAATTTCTGAAGTCAACATTTGCtaggaaaaatttgttttgcttgGT
TGTCGACGAGGTTCATAAAGTTACCTGGTGAGTGTTCTTTAGTAACCCTT
CATAATTGATTTGTGTCGTTCCTCTTATGTTAATGATGTTGGTTCCACCT
ACCCTATACCAGACTACACTAGTCACATAAATAGATCTCTCATTAAGGAA
AATAGAGATTTTTAGTATTTAATTAAAGCCCCAATGATGTCACTGCCAGA
TGAATTTATGACATTTTTTCTCTGATGTTATCTCTAATAGGCTAACTATT
AAGGCTAAGCTGATAGCAGGAACTTGCATGAATCACTCTGTGAGTCTTTT
TACtgtttgaatgaaaataaaagtcataatttgatttcattttaattttt
agggGAGCAGCCGTTAGTGCCACTGTCAATGCTGACCTAACGGAACTCGT
CCTAGCGTGGAACTTTCGAAACATCTGAAAATTGTTTCTGCTTGCAGTG

Coding sequence (CDS) from alignment at sc0000020:950666..951364+

>TCONS_00002480 ID=TCONS_00002480|Name=TCONS_00002480|organism=Clytia hemisphaerica|type=CDS|length=702bp|location=Sequence derived from alignment at sc0000020:950666..951364+ (Clytia hemisphaerica)
CTTACCAAAAACCTTGATATTGCACCTTCTCCCTTTGTCATTGTGGTTTC
ACCTCTGGTGGCATTGATTAAGGACCAAATTCATGAAGCCAATAATTCAC
CACTCAACTTAAAGGCTTGTACGATTCAGGAAGAAAACATTAAGAGCTGT
AACATGATATTTGGTACTCCAGAAAACTGGCTTCAAAACAGCACAGCCCA
AAAATTTCTGAAGTCAACATTTGCtaggaaaaatttgttttgcttgGTTG
TCGACGAGGTTCATAAAGTTACCTGggGAGCAGCCGTTAGTGCCACTGTC
AATGCTGACCTAACGGAACTCGTCCTAGCGTGGAACTTTCGAAACATCTG
ACTTACCAAAAACCTTGATATTGCACCTTCTCCCTTTGTCATTGTGGTTT
CACCTCTGGTGGCATTGATTAAGGACCAAATTCATGAAGCCAATAATTCA
CCACTCAACTTAAAGGCTTGTACGATTCAGGAAGAAAACATTAAGAGCTG
TAACATGATATTTGGTACTCCAGAAAACTGGCTTCAAAACAGCACAGCCC
AAAAATTTCTGAAGTCAACATTTGCtaggaaaaatttgttttgcttgGTT
GTCGACGAGGTTCATAAAGTTACCTGggGAGCAGCCGTTAGTGCCACTGT
CAATGCTGACCTAACGGAACTCGTCCTAGCGTGGAACTTTCGAAACATCT
GA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001324XLOC_001324Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002480-proteinTCONS_00002480-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002480-exon-sc0000020-1491911889:950666..950942TCONS_00002480-exon-sc0000020-1491911889:950666..950942Clytia hemisphaericaexon
TCONS_00002480-exon-sc0000020-1510915933:950666..950942TCONS_00002480-exon-sc0000020-1510915933:950666..950942Clytia hemisphaericaexon
TCONS_00002480-exon-sc0000020-1575043694:950666..950942TCONS_00002480-exon-sc0000020-1575043694:950666..950942Clytia hemisphaericaexon
TCONS_00002480-exon-sc0000020-1491911889:951268..951364TCONS_00002480-exon-sc0000020-1491911889:951268..951364Clytia hemisphaericaexon
TCONS_00002480-exon-sc0000020-1510915933:951268..951364TCONS_00002480-exon-sc0000020-1510915933:951268..951364Clytia hemisphaericaexon
TCONS_00002480-exon-sc0000020-1575043694:951268..951364TCONS_00002480-exon-sc0000020-1575043694:951268..951364Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020supercontigsc0000020:950666..951364 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.15985	1.83305	0.829313	3.10557	0.724761	0.897734	0.871363	0.572799	0.858005	0	0	0	0	0	0	0	0	0	0	0	0.461708	1.23619	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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