TCONS_00003542-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00003542-protein
Unique NameTCONS_00003542-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length331

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00003542-protein ID=TCONS_00003542-protein|Name=TCONS_00003542-protein|organism=Clytia hemisphaerica|type=polypeptide|length=331bp
MSQYNNYGQGGGGQQGGYGGGQQQSYGNYDQSSGGGYGASGGYNQGYQQQ
SGGGSYGGSSGGYSQGGSGGGYGGGNSYGGNSRGGGYGGGRDGGRDGGSG
YGDRGGSKPDGNYNYGGNNKFKDGMIIQEDTVFVAGLPPSASTTEIAEFF
GKIGIIKTDRRTREPKIWMYKNHDGTPKGECTITYDDCDASQAAVSWFNG
KEYDSSHVLKVSIAQRKAPEGGFQKRGGGRGGGRGRGGGFGGRGGGGRGG
GRGGGGDRPNARDGDWNCPSCNNLNFARRSECNRCQTPRADGGGGGGGSS
YGGGRGGDRGGGRDRDRGDRDRSDRRSSRPY
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_001980XLOC_001980Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00003542TCONS_00003542Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001876Znf_RanBP2
IPR000504RRM_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001876Zinc finger, RanBP2-typeSMARTSM00547zf_4coord: 264..288
e-value: 8.2E-9
score: 45.3
IPR001876Zinc finger, RanBP2-typePFAMPF00641zf-RanBPcoord: 262..289
e-value: 2.5E-10
score: 39.4
IPR001876Zinc finger, RanBP2-typePROSITEPS01358ZF_RANBP2_1coord: 266..285
IPR001876Zinc finger, RanBP2-typePROSITEPS50199ZF_RANBP2_2coord: 262..291
score: 11.246
IPR001876Zinc finger, RanBP2-typeSUPERFAMILY90209Ran binding protein zinc finger-likecoord: 255..292
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 131..212
e-value: 1.0E-10
score: 51.6
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 132..206
e-value: 4.1E-7
score: 29.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 130..216
score: 12.39
IPR000504RNA recognition motif domainSUPERFAMILY54928RNA-binding domain, RBDcoord: 128..247
NoneNo IPR availableGENE3D3.30.70.330coord: 22..255
e-value: 7.7E-14
score: 51.3
NoneNo IPR availableGENE3D4.10.1060.10coord: 256..310
e-value: 1.1E-13
score: 49.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 217..267
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 284..331

Blast
[Close]
BLAST of TCONS_00003542-protein vs. Swiss-Prot (Human)
Match: RBP56 (TATA-binding protein-associated factor 2N OS=Homo sapiens GN=TAF15 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 2.374e-30
Identity = 79/172 (45.93%), Postives = 110/172 (63.95%), Query Frame = 0 
Query:  130 DTVFVAGLPPSASTTEIAEFFGKIGIIKTDRRTREPKIWMYKNHD-GTPKGECTITYDDCDASQAAVSWFNGKEYDSSHVLKVSIAQRKAPEGGFQKRGGGRGGGRGRGGGFGGRGGGGRGGGRGGGGDRPNARDGDWNCP--SCNNLNFARRSECNRCQTPRADGGGGGGG 298
            +T+FV GL    ST ++ EFF +IGIIKT+++T +P I +Y + D G PKGE T+++DD  +++AA+ WF+GKE+   +++KVS A R+ PE  F + GG  GG RGRGG  G  G  GRGG         + + GDW CP  SC N+NFARR+ CN+C  PR +     GG
Sbjct:  234 NTIFVQGLGEGVSTDQVGEFFKQIGIIKTNKKTGKPMINLYTDKDTGKPKGEATVSFDDPPSAKAAIDWFDGKEF-HGNIIKVSFATRR-PE--FMRGGGSGGGRRGRGGYRGRGGFQGRGG---------DPKSGDWVCPNPSCGNMNFARRNSCNQCNEPRPEDSRPSGG 392
The following BLAST results are available for this feature:
BLAST of TCONS_00003542-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RBP562.374e-3045.93TATA-binding protein-associated factor 2N OS=Homo ... [more]
back to top