TCONS_00004268-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00004268-protein
Unique NameTCONS_00004268-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length216

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00004268-protein ID=TCONS_00004268-protein|Name=TCONS_00004268-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
MATQISKKRKFVADGVFKAELNEFLKRELAEDGYSGVEVRVTPLRTEIII
LATRTQNVLGEKGRRIRELTSVVQKRFNFPDDSVELYAEKVTFRGLCAIA
QCESLRYKLLAGAPVRKACYGVVRFIMESGAKGCEVVVSGKLRGQRAKSM
KFTDGFMIHSGFPIEEYIDVAIRHVYLRQGVLGIKVKIMXVQYFLSRRFK
HHCLQYLIKYHPSNVA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002370XLOC_002370Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00004268TCONS_00004268Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR015946KH_dom-like_a/b
IPR005703Ribosomal_S3_euk/arc
IPR001351Ribosomal_S3_C
IPR004044KH_dom_type_2
IPR018280Ribosomal_S3_CS
IPR009019KH_prok-type
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
cellular_component GO:0015935 small ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR015946K homology domain-like, alpha/betaGENE3D3.30.300.20coord: 4..92
e-value: 1.0E-8
score: 34.9
NoneNo IPR availableGENE3D3.30.1140.32coord: 93..193
e-value: 2.8E-38
score: 129.8
NoneNo IPR availableCDDcd0241340S_S3_KHcoord: 15..95
e-value: 2.13416E-49
score: 156.999
IPR005703Ribosomal protein S3, eukaryotic/archaealTIGRFAMTIGR01008TIGR01008coord: 8..192
e-value: 7.9E-68
score: 226.0
IPR001351Ribosomal protein S3, C-terminalPFAMPF00189Ribosomal_S3_Ccoord: 106..188
e-value: 1.7E-22
score: 79.6
IPR001351Ribosomal protein S3, C-terminalSUPERFAMILY54821Ribosomal protein S3 C-terminal domaincoord: 95..189
IPR004044K Homology domain, type 2PFAMPF07650KH_2coord: 20..92
e-value: 4.2E-11
score: 42.4
IPR004044K Homology domain, type 2PROSITEPS50823KH_TYPE_2coord: 21..92
score: 12.234
IPR018280Ribosomal protein S3, conserved sitePROSITEPS00548RIBOSOMAL_S3coord: 147..183
IPR009019K homology domain, prokaryotic typeSUPERFAMILY54814Prokaryotic type KH domain (KH-domain type II)coord: 10..99

Blast
[Close]
BLAST of TCONS_00004268-protein vs. Swiss-Prot (Human)
Match: RS3 (40S ribosomal protein S3 OS=Homo sapiens GN=RPS3 PE=1 SV=2)

HSP 1 Score: 332.413 bits (851), Expect = 7.415e-117
Identity = 163/189 (86.24%), Postives = 171/189 (90.48%), Query Frame = 0 
Query:    1 MATQISKKRKFVADGVFKAELNEFLKRELAEDGYSGVEVRVTPLRTEIIILATRTQNVLGEKGRRIRELTSVVQKRFNFPDDSVELYAEKVTFRGLCAIAQCESLRYKLLAGAPVRKACYGVVRFIMESGAKGCEVVVSGKLRGQRAKSMKFTDGFMIHSGFPIEEYIDVAIRHVYLRQGVLGIKVKIM 189
            MA QISKKRKFVADG+FKAELNEFL RELAEDGYSGVEVRVTP RTEIIILATRTQNVLGEKGRRIRELT+VVQKRF FP+ SVELYAEKV  RGLCAIAQ ESLRYKLL G  VR+ACYGV+RFIMESGAKGCEVVVSGKLRGQRAKSMKF DG MIHSG P+  Y+D A+RHV LRQGVLGIKVKIM
Sbjct:    1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLGEKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPVNYYVDTAVRHVLLRQGVLGIKVKIM 189
The following BLAST results are available for this feature:
BLAST of TCONS_00004268-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RS37.415e-11786.2440S ribosomal protein S3 OS=Homo sapiens GN=RPS3 P... [more]
back to top