TCONS_00005110-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00005110-protein
Unique NameTCONS_00005110-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00005110-protein ID=TCONS_00005110-protein|Name=TCONS_00005110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=334bp
MIIKPVQTIDKHQERVWCVAWNPKGTLLASSGGDKTIKIWGKEGEEWTCK
ETLDDQHNRTIRSISWSHCGKLLAAASFDSTVSIWDCSSGEFDCVATLEG
HENEVKSVDWSVSGSYLASCSRDKSVWVWEVADEDYECASVLSKHTQDVK
KVVWHPHLDVFASCSYDDTIRLFKEEDDDWECYDTLTGHTSTIWSISFDK
SGNRLVSCSDDGSMKIWQCYLPNNAEGITTIGGDPTWKCVCTLSGFHTRP
IYDVDWNKENGLIVSAGGDNNIKVFKEDQSAGNKNEPVFECVASVDRAHY
QDVNSVRWCPTDPTLVASCSDDMNVKFWRVIDEG
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_002906XLOC_002906Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00005110TCONS_00005110Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom
IPR019775WD40_repeat_CS
IPR017986WD40_repeat_dom
IPR028608CIAO1/Cia1
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0016226iron-sulfur cluster assembly
Vocabulary: Cellular Component
TermDefinition
GO:0097361CIA complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0016226 iron-sulfur cluster assembly
cellular_component GO:0097361 CIA complex
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 205..219
score: 33.61
coord: 28..42
score: 33.96
coord: 73..87
score: 36.95
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 46..86
e-value: 2.2E-7
score: 40.5
coord: 91..130
e-value: 2.7E-10
score: 50.2
coord: 179..218
e-value: 1.0E-9
score: 48.3
coord: 135..174
e-value: 1.0E-5
score: 35.0
coord: 236..276
e-value: 2.4E-7
score: 40.4
coord: 2..41
e-value: 4.6E-10
score: 49.4
coord: 288..329
e-value: 6.0E-7
score: 39.1
IPR001680WD40 repeatPFAMPF00400WD40coord: 290..328
e-value: 6.2E-5
score: 23.6
coord: 93..129
e-value: 2.2E-8
score: 34.5
coord: 237..275
e-value: 0.0046
score: 17.7
coord: 180..217
e-value: 3.1E-8
score: 34.0
coord: 4..40
e-value: 6.9E-8
score: 32.9
coord: 49..86
e-value: 1.8E-4
score: 22.2
coord: 137..173
e-value: 0.0031
score: 18.2
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 54..86
score: 12.246
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 9..40
score: 14.184
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 186..218
score: 14.519
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 296..334
score: 9.807
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 142..174
score: 8.971
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 98..131
score: 14.118
NoneNo IPR availableGENE3D2.80.10.50coord: 60..85
e-value: 1.7E-8
score: 34.1
NoneNo IPR availableGENE3D2.40.50.140coord: 136..167
e-value: 2.1E-6
score: 26.8
NoneNo IPR availableGENE3D1.10.10.670coord: 86..135
e-value: 1.5E-17
score: 62.8
NoneNo IPR availableGENE3D2.130.10.150coord: 248..334
e-value: 1.5E-16
score: 60.1
NoneNo IPR availableCDDcd00200WD40coord: 5..329
e-value: 1.61063E-69
score: 219.899
IPR015943WD40/YVTN repeat-like-containing domainGENE3D2.130.10.10coord: 4..59
e-value: 2.6E-13
score: 49.3
coord: 168..247
e-value: 5.1E-19
score: 68.1
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 117..131
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 73..87
IPR017986WD40-repeat-containing domainPROSITEPS50294WD_REPEATS_REGIONcoord: 9..334
score: 47.589
IPR017986WD40-repeat-containing domainSUPERFAMILY50978WD40 repeat-likecoord: 4..328
IPR028608Probable cytosolic iron-sulfur protein assembly protein, CIAO1/Cia1HAMAPMF_03037ciao1coord: 2..332
score: 28.116

Blast
[Close]
BLAST of TCONS_00005110-protein vs. Swiss-Prot (Human)
Match: CIAO1 (Probable cytosolic iron-sulfur protein assembly protein CIAO1 OS=Homo sapiens GN=CIAO1 PE=1 SV=1)

HSP 1 Score: 391.349 bits (1004), Expect = 1.014e-136
Identity = 183/316 (57.91%), Postives = 236/316 (74.68%), Query Frame = 0 
Query:   15 RVWCVAWNPKGTLLASSGGDKTIKIWGKEGEEWTCKETLDDQHNRTIRSISWSHCGKLLAAASFDSTVSIWDCSSGEFDCVATLEGHENEVKSVDWSVSGSYLASCSRDKSVWVWEVADED-YECASVLSKHTQDVKKVVWHPHLDVFASCSYDDTIRLFKEEDDDWECYDTLTGHTSTIWSISFDKSGNRLVSCSDDGSMKIWQCYLPNNAEGITTIGGDPTWKCVCTLSGFHTRPIYDVDWNKENGLIVSAGGDNNIKVFKEDQSAGNKNEPVFECVASVDRAHYQDVNSVRWCPTDPTLVASCSDDMNVKFWR 329
            R W +AWNP GTLLAS GGD+ I+IWG EG+ W CK  L + H RT+R ++WS CG  LA+ASFD+T  IW  +  +F+CV TLEGHENEVKSV W+ SG+ LA+CSRDKSVWVWEV +ED YEC SVL+ HTQDVK VVWHP  ++ AS SYDDT++L++EE+DDW C  TL GH ST+WS++FD SG RL SCSDD +++IW+ YLP N +G+   G DP+WKC+CTLSGFH+R IYD+ W +  G + +A GD+ I+VF+ED ++ +  +P F   A + +AH QDVN V W P +P L+ASCSDD  V FW+
Sbjct:   18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNS-DPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWK 332

HSP 2 Score: 126.716 bits (317), Expect = 1.034e-33
Identity = 88/289 (30.45%), Postives = 143/289 (49.48%), Query Frame = 0 
Query:   10 DKHQERVWCVAWNPKGTLLASSGGDKTIKIWGKEGEEWTCKETLDDQHNRTIRSISWSHCGKLLAAASFDSTVSIWDC-SSGEFDCVATLEGHENEVKSVDWSVSGSYLASCSRDKSVWVWEVADEDYECASVLSKHTQDVKKVVWHPHLDVFASCSYDDTIRLFKE-------------EDDDWECYDTLTG-HTSTIWSISFDKSGNRLVSCSDDGSMKIWQCYLPNNAEGITTIGGDPTWKCVCTLSGFHTRPIYDVDWN-KENGLIVSAGGDNNIKVFKEDQSAG 282
            + HQ  V  VAW+P G  LAS+  D T  IW K  +++ C  TL+  H   ++S++W+  G LLA  S D +V +W+     E++CV+ L  H  +VK V W  S   LAS S D +V ++   ++D+ C + L  H   V  + + P     ASCS D T+R++++              D  W+C  TL+G H+ TI+ I++ +    L +   D +++++Q       E   +    PT+     L   H++ +  V WN KE GL+ S   D  +  +K  +  G
Sbjct:   58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEG-HENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQ-------EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338

HSP 3 Score: 108.997 bits (271), Expect = 3.371e-27
Identity = 77/240 (32.08%), Postives = 120/240 (50.00%), Query Frame = 0 
Query:    6 VQTIDKHQERVWCVAWNPKGTLLASSGGDKTIKIWG-KEGEEWTCKETLDDQHNRTIRSISWSHCGKLLAAASFDSTVSIWDCSSGEFDCVATLEGHENEVKSVDWSVSGSYLASCSRDKSVWVWEV-------------ADEDYECASVLSK-HTQDVKKVVWHPHLDVFASCSYDDTIRLFKEE--DDDWECYDTLTGHTSTIWSISFD------KSGNRLVSCSDDGSMKIWQCYLP 222
            V T++ H+  V  VAW P G LLA+   DK++ +W   E +E+ C   L + H + ++ + W    +LLA+AS+D TV ++     ++ C ATLEGHE+ V S+ +  SG  LASCS D++V +W               +D  ++C   LS  H++ +  + W       A+   DD IR+F+E+   D  +   +LT H     S   +      K    L SCSDDG +  W+   P
Sbjct:   98 VTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVL-NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336
The following BLAST results are available for this feature:
BLAST of TCONS_00005110-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CIAO11.014e-13657.91Probable cytosolic iron-sulfur protein assembly pr... [more]
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