TCONS_00005662-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00005662-protein
Unique Name	TCONS_00005662-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	612

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00005662-protein ID=TCONS_00005662-protein|Name=TCONS_00005662-protein|organism=Clytia hemisphaerica|type=polypeptide|length=612bp
MKLFLLLIFFTRGVRPCPTECTCMPKESPIAVDCKYRAITEDTLQNVPSS
ATQLYLTNSNITFVLKRSIFYRLRNLQILYIDNDPAQTKNVTKVKVFEDG
VFQDLKKLQILGLSWIQLETLREQTFQGLTGLQRLFLTGNKLKTIVDGAF
KDLGNVYQLLLQENELQTINSGLFIGLKKLDDLNVTKNQLSSISGLKEAG
ELKRIHLSHNKLRSIRTDFFSDLPNLDEVAISFNPFTSISPDVFNHITKL
KSLTLESDELTCQCDFMSFVWNMIYKEKHAEVKCKKNGVFFSTEGSKQLT
DEDVKGMGCTNSSSWSDWGEPGLCKGGRSVQRRTCINHFQPPHCPGKPNN
ASLCSPITYADYSIAQGEIKMTSVSKDGSGILSPEQLNREIILDDQNFRT
SLERELQSRLYGKYKFKTRRVDVLWHRVKAEEPYLRVQYEIKMDKTEESI
ANENPLPKETGLYFGGYEGHVIPEWSTIWDYDECIMEPCDVNAKCILVKS
NFNFGCQCLSEYEGSGFECEKRKEKPLPKVHVSALLITFLIVGAWVLVII
CVIISRWYSKMKEQKRDNESEKIQEKYERGQTNAAASYGSTTSGPSSAGG
KQDTPEITFTSF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_003200	XLOC_003200	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00005662	TCONS_00005662	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003591	Leu-rich_rpt_typical-subtyp
IPR032675	L_dom-like
IPR001611	Leu-rich_rpt
IPR000742	EGF-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003591	Leucine-rich repeat, typical subtype	SMART	SM00369	LRR_typ_2	coord: 177..199 e-value: 390.0 score: 0.3 coord: 200..222 e-value: 21.0 score: 10.6 coord: 105..128 e-value: 4.9 score: 15.8 coord: 129..152 e-value: 0.053 score: 22.7 coord: 153..176 e-value: 18.0 score: 11.2 coord: 223..246 e-value: 2.2 score: 17.3
IPR032675	Leucine-rich repeat domain, L domain-like	GENE3D	3.80.10.10		coord: 9..189 e-value: 3.3E-27 score: 94.5 coord: 190..314 e-value: 2.1E-17 score: 62.4
IPR032675	Leucine-rich repeat domain, L domain-like	SUPERFAMILY	52058	L domain-like	coord: 18..273
IPR001611	Leucine-rich repeat	PFAM	PF13855	LRR_8	coord: 201..260 e-value: 3.0E-12 score: 46.0 coord: 131..190 e-value: 1.9E-11 score: 43.4
None	No IPR available	GENE3D	2.10.25.10		coord: 478..524 e-value: 4.0E-6 score: 26.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 567..612
IPR000742	EGF-like domain	PROSITE	PS50026	EGF_3	coord: 480..518 score: 13.004

Blast

[Close]

BLAST of TCONS_00005662-protein vs. Swiss-Prot (Human)
Match: RTN4R (Reticulon-4 receptor OS=Homo sapiens GN=RTN4R PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.120e-20
Identity = 62/241 (25.73%), Postives = 112/241 (46.47%), Query Frame = 0

Query:   16 PCPTECTCMPKESPIAVDCKYRAITEDTLQNVPSSATQLYLTNSNITFVLKRSIFYRLRNLQILYIDN------DPAQTKNVT-----------KVKVFEDGVFQDLKKLQILGLSWIQLETLREQTFQGLTGLQRLFLTGNKLKTIVDGAFKDLGNVYQLLLQENELQTINSGLFIGLKKLDDLNVTKNQLSSI--SGLKEAGELKRIHLSHNKLRSIRTDFFSDLPNLDEVAISFNPFT 237
            PCP  C C   E  +   C  + +    +  +P+++ +++L  + I+ V   S F   RNL IL++ +      D A    +            +++  +   F  L +L  L L    L+ L    F+GL  LQ L+L  N L+ + D  F+DLGN+  L L  N + ++    F GL  LD L + +N+++ +     ++ G L  ++L  N L ++ T+  + L  L  + ++ NP+ 
Sbjct:   26 PCPGACVCY-NEPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAAS-FRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 263

The following BLAST results are available for this feature:

BLAST of TCONS_00005662-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00005662-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RTN4R	4.120e-20	25.73	Reticulon-4 receptor OS=Homo sapiens GN=RTN4R PE=1...	[more]

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TCONS_00005662-protein (polypeptide) - C. hemisphaerica