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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002601 ID=TCONS_00002601|Name=TCONS_00002601|organism=Clytia hemisphaerica|type=transcript|length=1841bp
GTCACACCCGTACTGTTTATCGTGGGGGCGTATGGAATTGAAAGTATGAC
GGTATTTGACCTTTCTTATTCCGACGTTTCGGTGATTGAAGAAAGAGCTG
ACGGCGTTTAGGAGCCTTGCTATGAAAAAaaaaacaacCACCAAAGGTGC
AGAATGTCAATGAACAATGTCACTATTTCTACAGCCGCCCTCGATACACC
CAACACCACCCTTCTACCGCAAACAGCCACCTGTTTTCATATCATGGACG
AAGCAAATATGACACCTCATTTTAAAGTCACCTACATCACCATTTTGGCA
ATCTCCTTCATTTTCATCACCGTTGTGAATACCTTCCTCGTCATTGGTTT
AAAACGGGCTTACACAAACCTAACGTTATCCAAAAAATTGTTCCTATATC
TCTCAGCTAGTGATTTGGTAACAGGAATCGTGACAATACCTTATCAAGGA
GTTATGGTAATATATGGTTCCAGTGCTTCCTGCTTCCAAGTCCAGCTGCA
ATCTTTTACCAATACCTTTTCTCCTGGTCTATCAATGTTTACAATTCTAA
CAATCTCGATAGCCAGATATATCTCCGTTATCAAACCAACCTTTTTCAAG
AGTCATGCTAACAGCTCATGGGTATCTGTTTATATGTTTGGGCAAATTGT
TTTAGCAGCCTCAGCGGCTGTTTGGTATGCCACAGCTACTACCAGGGTAC
ATTTAGGATCTTATCTGGTTTTCGTGACAGGTGTATGCTTTGTTGTTATC
GGAGGAGCTATTattcttaacgtgttcttatttaTCAAACTACGTTCATC
TCACGATTCCACAAAAAAGGATTACCAAAAAGAAGTCATCAAAACTTTGA
TTATTATCTCCGTCATATTATTCATCTGTTTTCTCCCTAATGGTGTCGTG
TTTGCGTTGGTCGGTTATTACATAATGGCGGATATTGATAATATGGAGTT
ATACACAAAATTGATACCCTGGGTTTACGTACCGATTTTGTTAAATGCTG
GTTTGAACTCTTGTGTTTATATCTGGCGTGATAAGAAAATTAATCGTTAT
TTGAGGAAGTCAATTCATAATGAGCAGCGACGGTTGAGTAATAAATTCAA
TCCTCTTTCCAGTCCTCTGCCAATCACCAATAAGAGACTGGAAGCGATTT
TGAGTGACCACGCTAACCGTGATTCGTCTTATGAATCATACGAACATTCT
GAAGTTTgagtagtctagcaagctagacgactaattcatacatagtagaa
ataaagcaaaaagtaataaagggagaaattttagtcgtctagaaaccttt
gtgcactaacaccaaacaaaagaaaagtgtcaatattGCAATTATAATTT
TTTCCTGCTCAAAATAATTCTTGAGAAAAAAAATATGAGTGGATTTGTGT
ATTGAAAGTTTTTCATTTGAGTTGATTTCGTTTTGAGAGTTTGTTGTTGC
TTGATAAATTGTTTTCTCGCAACGCAAGTTTCTGCGTAGCTAGCCCCTGT
ATCTATAAGGCTGGAACACCGGAttcttccagtcgtttatacaaactaaa
tcccgtattattattattattagtattggtattattagtattacacgcat
tataaacgactccagtctaaagtTTGAGTCAAATTGATGTGAAGGATGGG
ACTATgtacatttatttatttatttaaattgAACCACTCCACGTCCGTGG
GCAAACTACAAATGTTTTACAAAACTAAACTTGTAAAATACCTAGTTTGT
AAATTCCCATTTCCGTAAGTTATCCATCCCGCTTCAAATTGGATAGtcgc
aaaaaaagaaatttttcaaacatacagtactttaagggaag Run BLAST on NCBI transcript from alignment at sc0000021:140480..143258+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00002601 ID=TCONS_00002601|Name=TCONS_00002601|organism=Clytia hemisphaerica|type=transcript|length=2779bp|location=Sequence derived from alignment at sc0000021:140480..143258+ (Clytia hemisphaerica)
GTCACACCCGTACTGTTTATCGTGGGGGCGTATGGAATTGAAAGTATGAC
GGTATTTGACCTTTCTTATTCCGACGTTTCGGTGATTGAAGAAAGAGCTG
ACGGCGTTTAGGAGCCTTGCTATGAAAAAGTGAGcattttagtaattttt
gctttaaatttctgcgttgaCGTTATTTTCCCACCACTTTTGTCAATTTA
AGATTCGACGTAAAAATTTTTCACCAAGGCAAAGGGCAAAAACTTAGATT
TTCTAATTCCATATAGTAGTAGTTACCGTTTACAATTGATGTTTTCATAA
ATTGAAACCAGTAAGATACAGACGGCTTTTGAGATAAGAAACAAgcgaaa
aggaaaaaaatatatagaagATGAAGGGACCTATTTCTTCATTAGAAGAA
AAAGGCTTAAAGTGGTCTTTTCATGAAGCATAAAGGAACTAGACCATCTT
AGCTTCTTTGCGgaggaaaaaaaatcgaataaaaaatattttcattgaaG
ATTTCTCTATGTCATAGTCTATGAGTAAGAACTTCTAACCTACAAAAGAA
GCTTCATCGATAATTTTTATgttgtcattacttttttttgattatttGGT
CATTGTCGGGACAGATTCGTCATTTCTTGGTTCCAAAATGATTCGATTGA
AAATCTTATCATGTCTTGACCTCCtaatttgacttttttaatgCCAAAAG
ATTAATACAGCGGGGTCTCCATAGCTCGAACACTCACGGGGAATGCAGAT
TTGTTCCAGTAATGGAAAATTTGAGTTAtcgagtaaggtttataaggcat
tgttgacTGAAGGGACCAGCAAACCTGGTAGAGTTAAGTTGACATTCAAG
TTACAGAGGTTTGAGTTAAATAGTCTCCATTacatgaattaaaaaaactt
ataTTGGTGCTCCTAACCTCCTTTCTTGATCAGTTATAAAGATTTTACAA
TCTATCCGGAACCTATAAGGAATGAGAATGTAGTTAAAATGTTGAtacta
aaaaatcaaattctagGGGAACCTAGTTTGCTTCATTTATTCTTCAAATC
TCATTATtatctttcagaaaaacaacCACCAAAGGTGCAGAATGTCAATG
AACAATGTCACTATTTCTACAGCCGCCCTCGATACACCCAACACCACCCT
TCTACCGCAAACAGCCACCTGTTTTCATATCATGGACGAAGCAAATATGA
CACCTCATTTTAAAGTCACCTACATCACCATTTTGGCAATCTCCTTCATT
TTCATCACCGTTGTGAATACCTTCCTCGTCATTGGTTTAAAACGGGCTTA
CACAAACCTAACGTTATCCAAAAAATTGTTCCTATATCTCTCAGCTAGTG
ATTTGGTAACAGGAATCGTGACAATACCTTATCAAGGAGTTATGGTAATA
TATGGTTCCAGTGCTTCCTGCTTCCAAGTCCAGCTGCAATCTTTTACCAA
TACCTTTTCTCCTGGTCTATCAATGTTTACAATTCTAACAATCTCGATAG
CCAGATATATCTCCGTTATCAAACCAACCTTTTTCAAGAGTCATGCTAAC
AGCTCATGGGTATCTGTTTATATGTTTGGGCAAATTGTTTTAGCAGCCTC
AGCGGCTGTTTGGTATGCCACAGCTACTACCAGGGTACATTTAGGATCTT
ATCTGGTTTTCGTGACAGGTGTATGCTTTGTTGTTATCGGAGGAGCTATT
attcttaacgtgttcttatttaTCAAACTACGTTCATCTCACGATTCCAC
AAAAAAGGATTACCAAAAAGAAGTCATCAAAACTTTGATTATTATCTCCG
TCATATTATTCATCTGTTTTCTCCCTAATGGTGTCGTGTTTGCGTTGGTC
GGTTATTACATAATGGCGGATATTGATAATATGGAGTTATACACAAAATT
GATACCCTGGGTTTACGTACCGATTTTGTTAAATGCTGGTTTGAACTCTT
GTGTTTATATCTGGCGTGATAAGAAAATTAATCGTTATTTGAGGAAGTCA
ATTCATAATGAGCAGCGACGGTTGAGTAATAAATTCAATCCTCTTTCCAG
TCCTCTGCCAATCACCAATAAGAGACTGGAAGCGATTTTGAGTGACCACG
CTAACCGTGATTCGTCTTATGAATCATACGAACATTCTGAAGTTTgagta
gtctagcaagctagacgactaattcatacatagtagaaataaagcaaaaa
gtaataaagggagaaattttagtcgtctagaaacctttgtgcactaacac
caaacaaaagaaaagtgtcaatattGCAATTATAATTTTTTCCTGCTCAA
AATAATTCTTGAGAAAAAAAATATGAGTGGATTTGTGTATTGAAAGTTTT
TCATTTGAGTTGATTTCGTTTTGAGAGTTTGTTGTTGCTTGATAAATTGT
TTTCTCGCAACGCAAGTTTCTGCGTAGCTAGCCCCTGTATCTATAAGGCT
GGAACACCGGAttcttccagtcgtttatacaaactaaatcccgtattatt
attattattagtattggtattattagtattacacgcattataaacgactc
cagtctaaagtTTGAGTCAAATTGATGTGAAGGATGGGACTATgtacatt
tatttatttatttaaattgAACCACTCCACGTCCGTGGGCAAACTACAAA
TGTTTTACAAAACTAAACTTGTAAAATACCTAGTTTGTAAATTCCCATTT
CCGTAAGTTATCCATCCCGCTTCAAATTGGATAGtcgcaaaaaaagaaat
ttttcaaacatacagtactttaagggaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00002601-exon-sc0000021-1491911889:140480..140608 | TCONS_00002601-exon-sc0000021-1491911889:140480..140608 | Clytia hemisphaerica | exon |
| TCONS_00002601-exon-sc0000021-1510915933:140480..140608 | TCONS_00002601-exon-sc0000021-1510915933:140480..140608 | Clytia hemisphaerica | exon |
| TCONS_00002601-exon-sc0000021-1575043694:140480..140608 | TCONS_00002601-exon-sc0000021-1575043694:140480..140608 | Clytia hemisphaerica | exon |
| TCONS_00002601-exon-sc0000021-1491911889:141547..143258 | TCONS_00002601-exon-sc0000021-1491911889:141547..143258 | Clytia hemisphaerica | exon |
| TCONS_00002601-exon-sc0000021-1510915933:141547..143258 | TCONS_00002601-exon-sc0000021-1510915933:141547..143258 | Clytia hemisphaerica | exon |
| TCONS_00002601-exon-sc0000021-1575043694:141547..143258 | TCONS_00002601-exon-sc0000021-1575043694:141547..143258 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000021 | supercontig | sc0000021:140480..143258 + |
Blast
The following BLAST results are available for this feature:
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