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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00002663 ID=TCONS_00002663|Name=TCONS_00002663|organism=Clytia hemisphaerica|type=transcript|length=2783bpRun BLAST on NCBI protein sequence of TCONS_00002663-protein >TCONS_00002663-protein ID=TCONS_00002663-protein|Name=TCONS_00002663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=523bp MTQKRMDSNRPCRLLQDHENSDVYKAIGHRCVTLSTSVCQVFLCGPQERDRun BLAST on NCBI transcript from alignment at sc0000021:163820..178721- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00002663 ID=TCONS_00002663|Name=TCONS_00002663|organism=Clytia hemisphaerica|type=transcript|length=14902bp|location=Sequence derived from alignment at sc0000021:163820..178721- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000021:163820..178721- >TCONS_00002663 ID=TCONS_00002663|Name=TCONS_00002663|organism=Clytia hemisphaerica|type=CDS|length=17292bp|location=Sequence derived from alignment at sc0000021:163820..178721- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00002663 vs. Swiss-Prot (Human)
Match: WASP (Wiskott-Aldrich syndrome protein OS=Homo sapiens GN=WAS PE=1 SV=4) HSP 1 Score: 230.72 bits (587), Expect = 1.163e-65 Identity = 119/294 (40.48%), Postives = 169/294 (57.48%), Query Frame = 1
Query: 682 NRPCRLLQDHENSDVYKAIGHRCVTLSTSVCQVFLCGPQERD-WHKRYVGVACFVKDNPKKSYYIRIVDISQKIVVWEQEIYNQFKYHSMKPHFHSFEGDDHVVGLNFADVDEAHHFKRMVDEKLNAKEQRKMERRQTNATRRAPPPPSG--------------HPATSHSAP-----QMNLNSNNTMAPTMSPAT-SXXXXXXXXXXXXXXXXXXXXXXGDIGKPSDFRHVGHVGWDPKGGFDVNNIDPQWKRLFDTIGVTQTQLEDEETSKFIYDFVESHGGIEKAAQELEK 1500
N P LLQDHEN +++ +G +C+TL+T+V Q++L P + W K + G CFVKDNP+KSY+IR+ + ++WEQE+Y+Q Y + P FH+F GDD GLNFAD DEA F+ +V EK+ + Q RQ+ R+ PPPP+ HP P + L + + P ++ + + K+ K K++K DIG PS F+HV HVGWDP+ GFDVNN+DP + LF G+++ QL D ETSK IYDF+E GG+E QE+ +
Sbjct: 21 NIPSTLLQDHENQRLFEMLGRKCLTLATAVVQLYLALPPGAEHWTKEHCGAVCFVKDNPQKSYFIRLYGLQAGRLLWEQELYSQLVYSTPTPFFHTFAGDDCQAGLNFADEDEAQAFRALVQEKIQKRNQ-----RQSGDRRQLPPPPTPANEERRGGLPPLPLHPGGDQGGPPVGPLSLGLATVDIQNPDITSSRYRGLPAPGPSPADKKRSGKKKISKADIGAPSGFKHVSHVGWDPQNGFDVNNLDPDLRSLFSRAGISEAQLTDAETSKLIYDFIEDQGGLEAVRQEMRR 309 The following BLAST results are available for this feature:
BLAST of TCONS_00002663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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