TCONS_00002755 (transcript) - C. hemisphaerica

Overview
NameTCONS_00002755
Unique NameTCONS_00002755
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length844

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00002755 ID=TCONS_00002755|Name=TCONS_00002755|organism=Clytia hemisphaerica|type=transcript|length=844bp
GTTCAGATTTCCTGcacaaaaatatctttcattttcattttgttgaagTT
CATCTGCTGTTGCAATTTCTGGATCGTACAAGGTGTTAACCGCTGCCTTG
CAAGTCGACAAGGAGCAATTTCTCATCACTTTCTTGGTACGAAAAATGTA
TATACACCATCATTATTAAGATACTTGATGAAGCCTCCGTCAACAAAAGG
CTCCACTGTAACTGGCTCACCATCAAGAATACTAAAAAAAATAGTCTGAT
ATGTGAATCAATTTTCACGAAAACCAGGCCTTGTAACACATTTCACTGTG
ATAGCTTTAGCTGCAGTAAGCATCTGCTCTTGTTTTCGAGTGTGCTGCTC
AAGGGTCATTTCATAGCGTGGCCCACATACTTCCCAAGCTGTTGCCTTGA
AATTCTTAATGACCCACATTTTTGTTGCATCATTCTCTGTTGTGTACGCT
TTAAATGCATTACGAAATCCTCCCTCAGCAAATTTTAGTAATTGCATACG
AAAGGTTAAAGGTGTTTGTCTCAATTTATTGTTCAGGGCTCGGTAGCCTA
AGAGTTTACCAGGTCCCTCAAGTTCTTTGGCTACTACAGCATCTTTACAC
TTTAACAGCCTCGATGCCTCGATTGGTGTCATTTTGTCTAAATACCACAG
ATTAAAGTGTCTCATTCTTCGATCTAGGGTAGAAAGGTAGAAAGACTCCA
TGGGTAATTagggtttttttttcgacgaaGCGGTTTTGCTTTACCAGAGT
CTTTAGATCTGTTTCAAGCCTTTCATTAACTTTCCAGTTAACAACCTCCA
TGACCTCATCCGCCATGTTTGTTTACATGCATATACGCGTTCAT
Run BLAST on NCBI

protein sequence of TCONS_00002755-protein

>TCONS_00002755-protein ID=TCONS_00002755-protein|Name=TCONS_00002755-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MESFYLSTLDRRMRHFNLWYLDKMTPIEASRLLKCKDAVVAKELEGPGKL
LGYRALNNKLRQTPLTFRMQLLKFAEGGFRNAFKAYTTENDATKMWVIKN
FKATAWEVCGPRYEMTLEQHTRKQEQMLTAAKAITVKCVTRPGFREN
Run BLAST on NCBI

transcript from alignment at sc0000021:213872..214715

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00002755 ID=TCONS_00002755|Name=TCONS_00002755|organism=Clytia hemisphaerica|type=transcript|length=844bp|location=Sequence derived from alignment at sc0000021:213872..214715 (Clytia hemisphaerica)
ATGAACGCGTATATGCATGTAAACAAACATGGCGGATGAGGTCATGGAGG
TTGTTAACTGGAAAGTTAATGAAAGGCTTGAAACAGATCTAAAGACTCTG
GTAAAGCAAAACCGCttcgtcgaaaaaaaaaccctAATTACCCATGGAGT
CTTTCTACCTTTCTACCCTAGATCGAAGAATGAGACACTTTAATCTGTGG
TATTTAGACAAAATGACACCAATCGAGGCATCGAGGCTGTTAAAGTGTAA
AGATGCTGTAGTAGCCAAAGAACTTGAGGGACCTGGTAAACTCTTAGGCT
ACCGAGCCCTGAACAATAAATTGAGACAAACACCTTTAACCTTTCGTATG
CAATTACTAAAATTTGCTGAGGGAGGATTTCGTAATGCATTTAAAGCGTA
CACAACAGAGAATGATGCAACAAAAATGTGGGTCATTAAGAATTTCAAGG
CAACAGCTTGGGAAGTATGTGGGCCACGCTATGAAATGACCCTTGAGCAG
CACACTCGAAAACAAGAGCAGATGCTTACTGCAGCTAAAGCTATCACAGT
GAAATGTGTTACAAGGCCTGGTTTTCGTGAAAATTGATTCACATATCAGA
CTATTTTTTTTAGTATTCTTGATGGTGAGCCAGTTACAGTGGAGCCTTTT
GTTGACGGAGGCTTCATCAAGTATCTTAATAATGATGGTGTATATACATT
TTTCGTACCAAGAAAGTGATGAGAAATTGCTCCTTGTCGACTTGCAAGGC
AGCGGTTAACACCTTGTACGATCCAGAAATTGCAACAGCAGATGAActtc
aacaaaatgaaaatgaaagatatttttgtgCAGGAAATCTGAAC

Coding sequence (CDS) from alignment at sc0000021:213872..214715

>TCONS_00002755 ID=TCONS_00002755|Name=TCONS_00002755|organism=Clytia hemisphaerica|type=CDS|length=444bp|location=Sequence derived from alignment at sc0000021:213872..214715 (Clytia hemisphaerica)
ATGGAGTCTTTCTACCTTTCTACCCTAGATCGAAGAATGAGACACTTTAA
TCTGTGGTATTTAGACAAAATGACACCAATCGAGGCATCGAGGCTGTTAA
AGTGTAAAGATGCTGTAGTAGCCAAAGAACTTGAGGGACCTGGTAAACTC
TTAGGCTACCGAGCCCTGAACAATAAATTGAGACAAACACCTTTAACCTT
TCGTATGCAATTACTAAAATTTGCTGAGGGAGGATTTCGTAATGCATTTA
AAGCGTACACAACAGAGAATGATGCAACAAAAATGTGGGTCATTAAGAAT
TTCAAGGCAACAGCTTGGGAAGTATGTGGGCCACGCTATGAAATGACCCT
TGAGCAGCACACTCGAAAACAAGAGCAGATGCTTACTGCAGCTAAAGCTA
TCACAGTGAAATGTGTTACAAGGCCTGGTTTTCGTGAAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_001483XLOC_001483Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002755-proteinTCONS_00002755-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00002755-exon-sc0000021-1491911889:213872..214715TCONS_00002755-exon-sc0000021-1491911889:213872..214715Clytia hemisphaericaexon
TCONS_00002755-exon-sc0000021-1510915933:213872..214715TCONS_00002755-exon-sc0000021-1510915933:213872..214715Clytia hemisphaericaexon
TCONS_00002755-exon-sc0000021-1575043694:213872..214715TCONS_00002755-exon-sc0000021-1575043694:213872..214715Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000021supercontigsc0000021:213872..214715 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.1814	2.18828	4.06448	2.73227	1.91862	1.52361	1.11119	0.962326	0.762563	0.582683	0.359666	0.653594	0.73067	0.131937	0	0.28992	0.731349	0.359818	0.864316	0.482965	1.07104	0.767478	0.584007	0.608274	0.0682549	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00002755 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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